PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000316398	[[85394892, 85397320]]	[[85396048, 85397173]]
NM_152723	[[85394886, 85397320]]	[[85396048, 85397173]]

Promoter

Chrom	Start	End	Description
chr11	85397167	85397254	CAGE_peak_1_at_CCDC89_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I085644	85644752	85645982	0.38	[{'connected_gene': 'TMEM126A', 'score': 12.88}, {'connected_gene': 'CREBZF', 'score': 10.82}, {'connected_gene': 'CCDC89', 'score': 10.81}, {'connected_gene': 'DLG2', 'score': 9.92}, {'connected_gene': 'TMEM126B', 'score': 0.37}]
chr11	GH11I085539	85539469	85541486	0.51	[{'connected_gene': 'TMEM126A', 'score': 9.53}, {'connected_gene': 'DLG2', 'score': 7.33}, {'connected_gene': 'SYTL2', 'score': 6.81}, {'connected_gene': 'CCDC89', 'score': 5.74}, {'connected_gene': 'RNU6-1292P', 'score': 0.29}]
chr11	GH11I085646	85646246	85649397	2.05	[{'connected_gene': 'TMEM126A', 'score': 557.49}, {'connected_gene': 'CCDC89', 'score': 10.82}, {'connected_gene': 'CREBZF', 'score': 10.82}, {'connected_gene': 'DLG2', 'score': 8.71}, {'connected_gene': 'SYTL2', 'score': 6.98}, {'connected_gene': 'TMEM126B', 'score': 0.37}]
chr11	GH11I085961	85961182	85963060	0.84	[{'connected_gene': 'CREBZF', 'score': 25.35}, {'connected_gene': 'EED', 'score': 24.55}, {'connected_gene': 'CCDC83', 'score': 11.48}, {'connected_gene': 'LOC100289518', 'score': 10.68}, {'connected_gene': 'HIKESHI', 'score': 10.13}, {'connected_gene': 'CCDC89', 'score': 9.01}, {'connected_gene': 'PICALM', 'score': 7.38}, {'connected_gene': 'SLC25A1P1', 'score': 0.31}]
chr11	GH11I085661	85661800	85667255	2.26	[{'connected_gene': 'CREBZF', 'score': 550.37}, {'connected_gene': 'TMEM126A', 'score': 12.61}, {'connected_gene': 'EED', 'score': 9.82}, {'connected_gene': 'CCDC89', 'score': 9.0}, {'connected_gene': 'SYTL2', 'score': 6.68}, {'connected_gene': 'GC11M085678', 'score': 0.37}]
chr11	GH11I085659	85659865	85661632	0.43	[{'connected_gene': 'CREBZF', 'score': 11.4}, {'connected_gene': 'CCDC89', 'score': 11.03}, {'connected_gene': 'TMEM126A', 'score': 0.39}, {'connected_gene': 'GC11M085678', 'score': 0.34}]
chr11	GH11I085705	85705458	85706508	0.51	[{'connected_gene': 'CREBZF', 'score': 10.95}, {'connected_gene': 'CCDC89', 'score': 0.37}, {'connected_gene': 'SYTL2', 'score': 0.14}]
chr11	GH11I085748	85748458	85748567	0.52	[{'connected_gene': 'CREBZF', 'score': 10.73}, {'connected_gene': 'CCDC89', 'score': 10.09}, {'connected_gene': 'SYTL2', 'score': 0.21}]
chr11	GH11I085608	85608437	85608726	0.2	[{'connected_gene': 'CREBZF', 'score': 10.27}, {'connected_gene': 'CCDC89', 'score': 10.2}, {'connected_gene': 'DLG2', 'score': 0.37}, {'connected_gene': 'RNU6-1292P', 'score': 0.15}]
chr11	GH11I085821	85821218	85825024	0.88	[{'connected_gene': 'CREBZF', 'score': 11.25}, {'connected_gene': 'CCDC83', 'score': 10.78}, {'connected_gene': 'CCDC89', 'score': 9.97}, {'connected_gene': 'TMEM126A', 'score': 4.11}, {'connected_gene': 'SYTL2', 'score': 1.79}, {'connected_gene': 'EED', 'score': 1.73}, {'connected_gene': 'ENSG00000279742', 'score': 0.29}]
chr11	GH11I086589	86589776	86597975	1.41	[{'connected_gene': 'ME3', 'score': 37.81}, {'connected_gene': 'EED', 'score': 35.12}, {'connected_gene': 'CREBZF', 'score': 27.28}, {'connected_gene': 'ENSG00000279742', 'score': 22.79}, {'connected_gene': 'LOC100420680', 'score': 11.51}, {'connected_gene': 'TMEM126B', 'score': 10.12}, {'connected_gene': 'CCDC89', 'score': 10.06}, {'connected_gene': 'PRSS23', 'score': 5.76}, {'connected_gene': 'GC11P086590', 'score': 0.77}, {'connected_gene': 'PIR37636', 'score': 0.77}, {'connected_gene': 'PIR51163', 'score': 0.34}, {'connected_gene': 'GC11M086573', 'score': 0.13}, {'connected_gene': 'ENSG00000254733', 'score': 0.1}]
chr11	GH11I085751	85751343	85754235	1.02	[{'connected_gene': 'SYTL2', 'score': 24.13}, {'connected_gene': 'CREBZF', 'score': 11.92}, {'connected_gene': 'CCDC89', 'score': 10.38}, {'connected_gene': 'ENSG00000279742', 'score': 4.66}, {'connected_gene': 'EED', 'score': 1.4}]
chr11	GH11I085599	85599729	85599924	0.22	[{'connected_gene': 'SYTL2', 'score': 19.57}, {'connected_gene': 'CREBZF', 'score': 9.93}, {'connected_gene': 'CCDC89', 'score': 9.92}, {'connected_gene': 'DLG2', 'score': 0.31}, {'connected_gene': 'RNU6-1292P', 'score': 0.17}]
chr11	GH11I085759	85759478	85760880	0.6	[{'connected_gene': 'SYTL2', 'score': 27.09}, {'connected_gene': 'CREBZF', 'score': 10.87}, {'connected_gene': 'CCDC89', 'score': 9.79}]
chr11	GH11I085745	85745362	85746570	0.31	[{'connected_gene': 'SYTL2', 'score': 29.86}, {'connected_gene': 'CREBZF', 'score': 10.73}, {'connected_gene': 'CCDC89', 'score': 10.01}]
chr11	GH11I085786	85786204	85788814	1.09	[{'connected_gene': 'SYTL2', 'score': 14.1}, {'connected_gene': 'TMEM126B', 'score': 13.23}, {'connected_gene': 'CCDC89', 'score': 9.95}, {'connected_gene': 'CCDC83', 'score': 8.99}]
chr11	GH11I085716	85716001	85720953	2.21	[{'connected_gene': 'SYTL2', 'score': 581.65}, {'connected_gene': 'CCDC89', 'score': 10.88}, {'connected_gene': 'CREBZF', 'score': 10.86}, {'connected_gene': 'CCDC83', 'score': 6.55}, {'connected_gene': 'TMEM126A', 'score': 4.07}]
chr11	GH11I085708	85708448	85708822	0.29	[{'connected_gene': 'SYTL2', 'score': 11.75}, {'connected_gene': 'CCDC89', 'score': 10.95}, {'connected_gene': 'CREBZF', 'score': 10.92}]
chr11	GH11I085771	85771403	85773758	0.63	[{'connected_gene': 'SYTL2', 'score': 27.06}, {'connected_gene': 'CCDC89', 'score': 10.44}, {'connected_gene': 'CREBZF', 'score': 10.44}]
chr11	GH11I085800	85800718	85800867	0.4	[{'connected_gene': 'SYTL2', 'score': 12.11}, {'connected_gene': 'CCDC89', 'score': 9.05}, {'connected_gene': 'CREBZF', 'score': 9.04}]
chr11	GH11I085725	85725013	85726991	0.87	[{'connected_gene': 'SYTL2', 'score': 31.31}, {'connected_gene': 'CCDC89', 'score': 10.43}, {'connected_gene': 'CREBZF', 'score': 10.42}]
chr11	GH11I085755	85755251	85757692	0.71	[{'connected_gene': 'SYTL2', 'score': 17.16}, {'connected_gene': 'CCDC89', 'score': 10.37}, {'connected_gene': 'CREBZF', 'score': 10.37}]
chr11	GH11I085790	85790989	85792367	0.2	[{'connected_gene': 'SYTL2', 'score': 24.82}, {'connected_gene': 'CCDC89', 'score': 0.14}]
chr11	GH11I085805	85805078	85808138	0.2	[{'connected_gene': 'SYTL2', 'score': 24.37}, {'connected_gene': 'CCDC89', 'score': 6.24}]
chr11	GH11I085785	85785078	85785127	0.4	[{'connected_gene': 'SYTL2', 'score': 0.31}, {'connected_gene': 'CCDC89', 'score': 0.15}]
chr11	GH11I085757	85757904	85757963	0.68	[{'connected_gene': 'SYTL2', 'score': 550.23}, {'connected_gene': 'CCDC89', 'score': 0.19}]
chr11	GH11I085758	85758104	85758163	1.04	[{'connected_gene': 'SYTL2', 'score': 550.23}, {'connected_gene': 'CCDC89', 'score': 0.19}]
chr11	GH11I085737	85737407	85738487	0.56	[{'connected_gene': 'SYTL2', 'score': 19.96}, {'connected_gene': 'CCDC89', 'score': 0.23}]
chr11	GH11I085740	85740558	85741363	0.2	[{'connected_gene': 'SYTL2', 'score': 25.36}, {'connected_gene': 'CCDC89', 'score': 0.23}]
chr11	GH11I085741	85741868	85744780	0.58	[{'connected_gene': 'SYTL2', 'score': 29.86}, {'connected_gene': 'CCDC89', 'score': 4.66}]
chr11	GH11I085783	85783898	85784090	0.24	[{'connected_gene': 'SYTL2', 'score': 8.97}, {'connected_gene': 'CCDC89', 'score': 0.15}]
chr11	GH11I085694	85694749	85696077	0.38	[{'connected_gene': 'SYTL2', 'score': 18.68}, {'connected_gene': 'CCDC83', 'score': 11.17}, {'connected_gene': 'DLG2', 'score': 10.1}, {'connected_gene': 'TMEM126B', 'score': 10.1}, {'connected_gene': 'HIKESHI', 'score': 9.13}, {'connected_gene': 'CCDC89', 'score': 5.15}]
chr11	GH11I085773	85773885	85775427	0.2	[{'connected_gene': 'SYTL2', 'score': 27.14}, {'connected_gene': 'CCDC83', 'score': 10.99}, {'connected_gene': 'CCDC89', 'score': 10.44}, {'connected_gene': 'CREBZF', 'score': 10.43}]
chr11	GH11I085808	85808872	85812041	2.29	[{'connected_gene': 'SYTL2', 'score': 578.23}, {'connected_gene': 'CCDC83', 'score': 8.54}, {'connected_gene': 'CCDC89', 'score': 6.29}]
chr11	GH11I085377	85377301	85379393	0.2	[{'connected_gene': 'DLG2', 'score': 9.95}, {'connected_gene': 'SYTL2', 'score': 8.61}, {'connected_gene': 'CCDC89', 'score': 3.89}, {'connected_gene': 'PIR45526', 'score': 0.44}, {'connected_gene': 'LOC100421303', 'score': 0.18}]
chr11	GH11I085469	85469965	85471526	0.43	[{'connected_gene': 'DLG2', 'score': 6.71}, {'connected_gene': 'CCDC89', 'score': 5.55}, {'connected_gene': 'PIR59556', 'score': 0.39}, {'connected_gene': 'LOC100421303', 'score': 0.37}]
chr11	GH11I085779	85779391	85781072	0.59	[{'connected_gene': 'CCDC89', 'score': 10.21}, {'connected_gene': 'CREBZF', 'score': 10.2}, {'connected_gene': 'SYTL2', 'score': 6.33}]
chr11	GH11I085723	85723218	85723387	0.73	[{'connected_gene': 'CCDC89', 'score': 10.43}, {'connected_gene': 'CREBZF', 'score': 10.42}, {'connected_gene': 'SYTL2', 'score': 0.17}]
chr11	GH11I085769	85769880	85770106	0.23	[{'connected_gene': 'CCDC89', 'score': 10.45}, {'connected_gene': 'CREBZF', 'score': 10.44}, {'connected_gene': 'SYTL2', 'score': 6.21}]
chr11	GH11I085684	85684379	85687274	1.87	[{'connected_gene': 'CCDC89', 'score': 565.2}, {'connected_gene': 'SYTL2', 'score': 20.89}, {'connected_gene': 'CREBZF', 'score': 0.77}]
chr11	GH11I085776	85776689	85777983	0.31	[{'connected_gene': 'CCDC89', 'score': 6.31}, {'connected_gene': 'SYTL2', 'score': 0.29}]
chr11	GH11I085738	85736318	85736567	0.2	[{'connected_gene': 'CCDC89', 'score': 0.23}, {'connected_gene': 'SYTL2', 'score': 0.19}]
chr11	GH11I085736	85736915	85737087	0.2	[{'connected_gene': 'CCDC89', 'score': 0.23}, {'connected_gene': 'SYTL2', 'score': 0.19}]
chr11	GH11I085699	85699593	85700941	0.2	[{'connected_gene': 'CCDC89', 'score': 0.39}, {'connected_gene': 'SYTL2', 'score': 0.14}]
chr11	GH11I085542	85541737	85541886	0.58	[{'connected_gene': 'CCDC89', 'score': 5.71}, {'connected_gene': 'RNU6-1292P', 'score': 0.29}, {'connected_gene': 'DLG2', 'score': 0.17}]
chr11	GH11I085825	85825443	85832874	1.29	[{'connected_gene': 'CCDC83', 'score': 25.43}, {'connected_gene': 'CREBZF', 'score': 10.18}, {'connected_gene': 'CCDC89', 'score': 10.18}, {'connected_gene': 'SYTL2', 'score': 6.73}, {'connected_gene': 'ENSG00000279742', 'score': 0.31}]
chr11	GH11I085695	85694498	85694627	0.49	[{'connected_gene': 'CCDC83', 'score': 10.81}, {'connected_gene': 'DLG2', 'score': 10.1}, {'connected_gene': 'TMEM126B', 'score': 10.1}, {'connected_gene': 'HIKESHI', 'score': 9.13}, {'connected_gene': 'CCDC89', 'score': 0.44}, {'connected_gene': 'SYTL2', 'score': 0.13}]
chr11	GH11I085854	85854001	85855858	2.04	[{'connected_gene': 'CCDC83', 'score': 566.72}, {'connected_gene': 'ENSG00000279742', 'score': 550.77}, {'connected_gene': 'CCDC89', 'score': 9.75}, {'connected_gene': 'CREBZF', 'score': 9.75}, {'connected_gene': 'SYTL2', 'score': 0.26}]
chr11	GH11I085837	85837243	85837899	0.2	[{'connected_gene': 'CCDC83', 'score': 11.97}, {'connected_gene': 'CCDC89', 'score': 9.92}, {'connected_gene': 'CREBZF', 'score': 9.92}, {'connected_gene': 'HIKESHI', 'score': 9.74}, {'connected_gene': 'ENSG00000279742', 'score': 0.37}, {'connected_gene': 'SYTL2', 'score': 0.31}]
chr11	GH11I085835	85835440	85836299	0.31	[{'connected_gene': 'CCDC83', 'score': 11.97}, {'connected_gene': 'CCDC89', 'score': 9.93}, {'connected_gene': 'CREBZF', 'score': 9.92}, {'connected_gene': 'HIKESHI', 'score': 9.74}, {'connected_gene': 'ENSG00000279742', 'score': 0.37}, {'connected_gene': 'SYTL2', 'score': 0.34}]
chr11	GH11I085682	85682201	85683487	1.37	[{'connected_gene': 'GC11M085678', 'score': 550.77}, {'connected_gene': 'CREBZF', 'score': 550.77}, {'connected_gene': 'SYTL2', 'score': 20.88}, {'connected_gene': 'CCDC89', 'score': 5.86}]