PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000491890	[[71390006, 71390069], [71391235, 71391595], [71392545, 71392868]]	None
ENST00000373279	[[71390013, 71390069], [71391235, 71391303], [71391464, 71391595], [71392545, 71393352]]	[[71391499, 71391595], [71392545, 71392815]]
ENST00000421716	[[71390299, 71390415], [71391235, 71391303], [71391464, 71391595], [71392545, 71392633]]	[[71390392, 71390415], [71391235, 71391303], [71391464, 71391595], [71392545, 71392633]]

Promoter

Chrom	Start	End	Description
chr10	71389983	71390040	CAGE_peak_1_at_C10orf35_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I069757	69757351	69758659	1	[{'connected_gene': 'DDX50', 'score': 49.52}, {'connected_gene': 'CEP57L1P1', 'score': 27.96}, {'connected_gene': 'PALD1', 'score': 18.73}, {'connected_gene': 'COL13A1', 'score': 11.17}, {'connected_gene': 'FAM241B', 'score': 10.3}, {'connected_gene': 'KIF1BP', 'score': 9.89}, {'connected_gene': 'TSPAN15', 'score': 4.72}, {'connected_gene': 'RPL5P26', 'score': 0.34}, {'connected_gene': 'GC10P069687', 'score': 0.19}]
chr10	GH10I069695	69695555	69696774	0.72	[{'connected_gene': 'CCAR1', 'score': 15.86}, {'connected_gene': 'SAR1A', 'score': 14.2}, {'connected_gene': 'DDX50', 'score': 13.78}, {'connected_gene': 'COL13A1', 'score': 10.93}, {'connected_gene': 'FAM241B', 'score': 10.74}, {'connected_gene': 'GC10P069687', 'score': 0.44}, {'connected_gene': 'RPL5P26', 'score': 0.18}]
chr10	GH10I069507	69506227	69506757	0.2	[{'connected_gene': 'NEUROG3', 'score': 11.24}, {'connected_gene': 'LOC101929021', 'score': 11.24}, {'connected_gene': 'FAM241B', 'score': 10.88}, {'connected_gene': 'TMEM256P1', 'score': 0.37}, {'connected_gene': 'GC10M069447', 'score': 0.28}, {'connected_gene': 'TSPAN15', 'score': 0.18}]
chr10	GH10I069637	69637005	69637154	0.49	[{'connected_gene': 'NEUROG3', 'score': 11.28}, {'connected_gene': 'LOC101929021', 'score': 11.28}, {'connected_gene': 'COL13A1', 'score': 10.57}, {'connected_gene': 'FAM241B', 'score': 0.44}, {'connected_gene': 'LOC105378346', 'score': 0.25}]
chr10	GH10I069237	69237508	69238054	1.06	[{'connected_gene': 'HK1', 'score': 11.57}, {'connected_gene': 'ENSG00000231748', 'score': 11.57}, {'connected_gene': 'HKDC1', 'score': 9.68}, {'connected_gene': 'FAM241B', 'score': 9.35}, {'connected_gene': 'CCAR1', 'score': 4.95}, {'connected_gene': 'LOC101928994', 'score': 0.44}]
chr10	GH10I069312	69312685	69312834	0.49	[{'connected_gene': 'HK1', 'score': 11.98}, {'connected_gene': 'ENSG00000231748', 'score': 11.98}, {'connected_gene': 'HKDC1', 'score': 10.26}, {'connected_gene': 'FAM241B', 'score': 9.84}, {'connected_gene': 'RPS15AP28', 'score': 0.39}, {'connected_gene': 'TACR2', 'score': 0.15}]
chr10	GH10I069314	69312894	69313414	0.73	[{'connected_gene': 'HK1', 'score': 20.62}, {'connected_gene': 'ENSG00000231748', 'score': 11.96}, {'connected_gene': 'HKDC1', 'score': 10.26}, {'connected_gene': 'FAM241B', 'score': 9.84}, {'connected_gene': 'RPS15AP28', 'score': 0.39}, {'connected_gene': 'TACR2', 'score': 0.15}]
chr10	GH10I069313	69313875	69314110	0.63	[{'connected_gene': 'HK1', 'score': 11.98}, {'connected_gene': 'ENSG00000231748', 'score': 11.96}, {'connected_gene': 'HKDC1', 'score': 10.26}, {'connected_gene': 'FAM241B', 'score': 9.84}, {'connected_gene': 'RPS15AP28', 'score': 0.39}, {'connected_gene': 'TACR2', 'score': 0.15}]
chr10	GH10I069315	69315097	69322298	2.53	[{'connected_gene': 'HK1', 'score': 578.84}, {'connected_gene': 'TYSND1', 'score': 24.86}, {'connected_gene': 'DDX50', 'score': 21.16}, {'connected_gene': 'DDX21', 'score': 13.78}, {'connected_gene': 'ENSG00000231748', 'score': 11.95}, {'connected_gene': 'CCAR1', 'score': 11.64}, {'connected_gene': 'HKDC1', 'score': 10.25}, {'connected_gene': 'SAR1A', 'score': 10.08}, {'connected_gene': 'FAM241B', 'score': 9.84}, {'connected_gene': 'RPS15AP28', 'score': 0.37}, {'connected_gene': 'TACR2', 'score': 0.15}]
chr10	GH10I069445	69445091	69454094	2.41	[{'connected_gene': 'TSPAN15', 'score': 593.72}, {'connected_gene': 'DDX50', 'score': 23.33}, {'connected_gene': 'CCAR1', 'score': 22.96}, {'connected_gene': 'DDX21', 'score': 11.13}, {'connected_gene': 'TYSND1', 'score': 10.92}, {'connected_gene': 'FAM241B', 'score': 10.56}, {'connected_gene': 'VPS26A', 'score': 9.9}, {'connected_gene': 'TACR2', 'score': 5.24}, {'connected_gene': 'AIFM2', 'score': 5.11}, {'connected_gene': 'ATP5MC1P7', 'score': 0.37}, {'connected_gene': 'GC10M069447', 'score': 0.37}]
chr10	GH10I069501	69501900	69503649	0.43	[{'connected_gene': 'TSPAN15', 'score': 13.24}, {'connected_gene': 'NEUROG3', 'score': 11.23}, {'connected_gene': 'LOC101929021', 'score': 11.23}, {'connected_gene': 'FAM241B', 'score': 10.88}, {'connected_gene': 'TMEM256P1', 'score': 0.34}, {'connected_gene': 'GC10M069447', 'score': 0.29}]
chr10	GH10I069490	69490959	69500035	0.8	[{'connected_gene': 'TSPAN15', 'score': 40.19}, {'connected_gene': 'NEUROG3', 'score': 11.22}, {'connected_gene': 'LOC101929021', 'score': 11.22}, {'connected_gene': 'FAM241B', 'score': 10.92}, {'connected_gene': 'GC10M069447', 'score': 0.31}, {'connected_gene': 'TMEM256P1', 'score': 0.31}]
chr10	GH10I069489	69489372	69490452	0.31	[{'connected_gene': 'TSPAN15', 'score': 22.61}, {'connected_gene': 'FAM241B', 'score': 10.91}, {'connected_gene': 'GC10M069447', 'score': 0.34}, {'connected_gene': 'TMEM256P1', 'score': 0.29}]
chr10	GH10I069425	69425125	69427095	1.35	[{'connected_gene': 'TSPAN15', 'score': 572.32}, {'connected_gene': 'FAM241B', 'score': 10.67}, {'connected_gene': 'HK1', 'score': 10.12}, {'connected_gene': 'ENSG00000231748', 'score': 10.12}, {'connected_gene': 'TACR2', 'score': 5.28}, {'connected_gene': 'GC10M069434', 'score': 0.44}]
chr10	GH10I069423	69423656	69424876	1.15	[{'connected_gene': 'TSPAN15', 'score': 573.73}, {'connected_gene': 'FAM241B', 'score': 10.67}, {'connected_gene': 'HK1', 'score': 10.12}, {'connected_gene': 'ENSG00000231748', 'score': 10.12}, {'connected_gene': 'TACR2', 'score': 0.44}]
chr10	GH10I069477	69477602	69482653	1.03	[{'connected_gene': 'TSPAN15', 'score': 33.37}, {'connected_gene': 'FAM241B', 'score': 10.17}, {'connected_gene': 'HK1', 'score': 9.84}, {'connected_gene': 'ENSG00000231748', 'score': 9.84}, {'connected_gene': 'GC10M069447', 'score': 0.39}, {'connected_gene': 'TMEM256P1', 'score': 0.26}]
chr10	GH10I069482	69482844	69488546	0.49	[{'connected_gene': 'TSPAN15', 'score': 33.3}, {'connected_gene': 'FAM241B', 'score': 10.91}, {'connected_gene': 'HK1', 'score': 10.06}, {'connected_gene': 'ENSG00000231748', 'score': 10.06}, {'connected_gene': 'GC10M069447', 'score': 0.37}, {'connected_gene': 'TMEM256P1', 'score': 0.28}]
chr10	GH10I069436	69436669	69441022	1.2	[{'connected_gene': 'TSPAN15', 'score': 38.95}, {'connected_gene': 'FAM241B', 'score': 10.55}, {'connected_gene': 'HK1', 'score': 9.99}, {'connected_gene': 'ENSG00000231748', 'score': 9.98}, {'connected_gene': 'ATP5MC1P7', 'score': 0.44}, {'connected_gene': 'GC10M069447', 'score': 0.29}]
chr10	GH10I069441	69441317	69442688	0.2	[{'connected_gene': 'TSPAN15', 'score': 43.77}, {'connected_gene': 'FAM241B', 'score': 10.44}, {'connected_gene': 'ATP5MC1P7', 'score': 0.44}, {'connected_gene': 'GC10M069447', 'score': 0.31}]
chr10	GH10I069629	69629645	69630801	1.96	[{'connected_gene': 'FAM241B', 'score': 562.98}, {'connected_gene': 'CCAR1', 'score': 15.86}, {'connected_gene': 'SAR1A', 'score': 14.18}, {'connected_gene': 'DDX50', 'score': 13.78}, {'connected_gene': 'MTND1P20', 'score': 0.29}]
chr10	GH10I069898	69898065	69902548	1.36	[{'connected_gene': 'FAM241B', 'score': 9.81}, {'connected_gene': 'H2AFY2', 'score': 2.0}, {'connected_gene': 'LOC105378347', 'score': 0.18}, {'connected_gene': 'COL13A1', 'score': 0.15}, {'connected_gene': 'LOC102723350', 'score': 0.13}]
chr10	GH10I069863	69863118	69865582	0.94	[{'connected_gene': 'FAM241B', 'score': 10.06}, {'connected_gene': 'PPA1', 'score': 5.23}, {'connected_gene': 'LOC105378347', 'score': 0.26}, {'connected_gene': 'COL13A1', 'score': 0.21}, {'connected_gene': 'LOC102723350', 'score': 0.1}]
chr10	GH10I069576	69576019	69578973	0.79	[{'connected_gene': 'FAM241B', 'score': 11.73}, {'connected_gene': 'NEUROG3', 'score': 0.77}, {'connected_gene': 'LOC101929021', 'score': 0.77}, {'connected_gene': 'MTATP6P23', 'score': 0.39}]
chr10	GH10I069865	69865599	69870180	1.33	[{'connected_gene': 'FAM241B', 'score': 10.05}, {'connected_gene': 'COL13A1', 'score': 4.94}, {'connected_gene': 'LOC105378347', 'score': 0.25}, {'connected_gene': 'LOC102723350', 'score': 0.1}]
chr10	GH10I069895	69895073	69897948	1.08	[{'connected_gene': 'FAM241B', 'score': 9.81}, {'connected_gene': 'COL13A1', 'score': 2.25}, {'connected_gene': 'LOC105378347', 'score': 0.18}, {'connected_gene': 'LOC102723350', 'score': 0.13}]
chr10	GH10I069883	69883194	69884648	0.76	[{'connected_gene': 'FAM241B', 'score': 10.41}, {'connected_gene': 'LOC105378347', 'score': 0.21}, {'connected_gene': 'COL13A1', 'score': 0.18}, {'connected_gene': 'LOC102723350', 'score': 0.12}]
chr10	GH10I069876	69876866	69878610	0.69	[{'connected_gene': 'FAM241B', 'score': 9.77}, {'connected_gene': 'LOC105378347', 'score': 0.22}, {'connected_gene': 'COL13A1', 'score': 0.18}, {'connected_gene': 'LOC102723350', 'score': 0.11}]
chr10	GH10I069871	69871165	69871374	0.51	[{'connected_gene': 'FAM241B', 'score': 10.05}, {'connected_gene': 'LOC105378347', 'score': 0.23}, {'connected_gene': 'COL13A1', 'score': 0.2}, {'connected_gene': 'LOC102723350', 'score': 0.11}]
chr10	GH10I069878	69878748	69882604	0.69	[{'connected_gene': 'FAM241B', 'score': 10.41}, {'connected_gene': 'LOC105378347', 'score': 0.22}, {'connected_gene': 'COL13A1', 'score': 0.18}, {'connected_gene': 'LOC102723350', 'score': 0.12}]
chr10	GH10I069914	69914485	69914594	0.54	[{'connected_gene': 'FAM241B', 'score': 10.3}, {'connected_gene': 'LOC105378347', 'score': 0.16}, {'connected_gene': 'LOC102723350', 'score': 0.15}, {'connected_gene': 'COL13A1', 'score': 0.14}]
chr10	GH10I069916	69914745	69914894	0.69	[{'connected_gene': 'FAM241B', 'score': 10.3}, {'connected_gene': 'LOC105378347', 'score': 0.16}, {'connected_gene': 'LOC102723350', 'score': 0.15}, {'connected_gene': 'COL13A1', 'score': 0.14}]
chr10	GH10I069655	69655764	69656311	0.52	[{'connected_gene': 'FAM241B', 'score': 11.15}, {'connected_gene': 'LOC105378346', 'score': 0.31}]
chr10	GH10I069640	69639325	69639554	0.71	[{'connected_gene': 'FAM241B', 'score': 21.45}, {'connected_gene': 'LOC105378346', 'score': 0.25}]
chr10	GH10I069639	69639674	69640868	0.46	[{'connected_gene': 'FAM241B', 'score': 20.05}, {'connected_gene': 'LOC105378346', 'score': 0.26}]
chr10	GH10I069663	69663685	69663814	0.46	[{'connected_gene': 'FAM241B', 'score': 10.9}, {'connected_gene': 'LOC105378346', 'score': 0.34}]
chr10	GH10I069626	69626873	69627126	0.23	[{'connected_gene': 'FAM241B', 'score': 13.39}, {'connected_gene': 'MTND1P20', 'score': 0.29}]
chr10	GH10I069872	69872038	69875303	0.4	[{'connected_gene': 'COL13A1', 'score': 11.31}, {'connected_gene': 'FAM241B', 'score': 10.08}, {'connected_gene': 'SRGN', 'score': 4.92}, {'connected_gene': 'LOC105378347', 'score': 0.23}, {'connected_gene': 'LOC102723350', 'score': 0.11}]
chr10	GH10I069845	69845450	69848512	0.99	[{'connected_gene': 'COL13A1', 'score': 11.69}, {'connected_gene': 'FAM241B', 'score': 10.26}, {'connected_gene': 'LOC105378347', 'score': 0.31}, {'connected_gene': 'LOC102723350', 'score': 0.09}]
chr10	GH10I069644	69644685	69644814	0.67	[{'connected_gene': 'COL13A1', 'score': 11.15}, {'connected_gene': 'FAM241B', 'score': 0.39}, {'connected_gene': 'LOC105378346', 'score': 0.26}]
chr10	GH10I069645	69645348	69645546	0.4	[{'connected_gene': 'COL13A1', 'score': 11.15}, {'connected_gene': 'FAM241B', 'score': 0.37}, {'connected_gene': 'LOC105378346', 'score': 0.28}]
chr10	GH10I069683	69683295	69687119	1.14	[{'connected_gene': 'LOC105378346', 'score': 550.77}, {'connected_gene': 'GC10P069687', 'score': 550.77}, {'connected_gene': 'FAM241B', 'score': 11.19}]
chr10	GH10I069538	69538556	69538758	0.24	[{'connected_gene': 'LOC105378345', 'score': 550.77}, {'connected_gene': 'HK1', 'score': 61.45}, {'connected_gene': 'NEUROG3', 'score': 12.19}, {'connected_gene': 'LOC101929021', 'score': 12.19}, {'connected_gene': 'FAM241B', 'score': 11.38}, {'connected_gene': 'TMEM256P1', 'score': 0.39}]
chr10	GH10I069595	69595893	69596066	0.22	[{'connected_gene': 'MTND2P15', 'score': 550.77}, {'connected_gene': 'MTND1P20', 'score': 550.77}, {'connected_gene': 'FAM241B', 'score': 12.46}, {'connected_gene': 'NEUROG3', 'score': 12.11}, {'connected_gene': 'LOC101929021', 'score': 12.11}]