PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000274024	[[120238404, 120240246], [120240690, 120240798], [120241824, 120241997], [120243190, 120243545]]	[[120240195, 120240246], [120240690, 120240798], [120241824, 120241997], [120243190, 120243257]]
NM_000134	[[120238404, 120240246], [120240690, 120240798], [120241824, 120241997], [120243190, 120243316]]	[[120240195, 120240246], [120240690, 120240798], [120241824, 120241997], [120243190, 120243257]]

Promoter

Chrom	Start	End	Description
chr4	120243266	120243277	CAGE_peak_2_at_FABP2_5end
chr4	120243283	120243299	CAGE_peak_1_at_FABP2_5end
chr4	120243499	120243510	CAGE_peak_4_at_FABP2_5end
chr4	120243555	120243562	CAGE_peak_5_at_FABP2_5end
chr4	120243571	120243587	CAGE_peak_3_at_FABP2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I119370	119370357	119371400	0.85	[{'connected_gene': 'LOC645513', 'score': 49.65}, {'connected_gene': 'FABP2', 'score': 34.82}, {'connected_gene': 'KLHL2P1', 'score': 6.62}, {'connected_gene': 'RNU4-33P', 'score': 0.77}, {'connected_gene': 'PIRC19', 'score': 0.37}]
chr4	GH04I119102	119102053	119104806	1.54	[{'connected_gene': 'METTL14', 'score': 17.26}, {'connected_gene': 'CICP16', 'score': 15.46}, {'connected_gene': 'USP53', 'score': 15.35}, {'connected_gene': 'MYOZ2', 'score': 11.41}, {'connected_gene': 'SNHG8', 'score': 10.89}, {'connected_gene': 'FABP2', 'score': 6.89}, {'connected_gene': 'LOC102723967', 'score': 0.77}, {'connected_gene': 'GC04P119115', 'score': 0.39}]
chr4	GH04I119105	119105910	119107086	0.86	[{'connected_gene': 'USP53', 'score': 15.46}, {'connected_gene': 'FABP2', 'score': 4.63}, {'connected_gene': 'GC04P119115', 'score': 0.44}, {'connected_gene': 'LOC102723967', 'score': 0.44}]
chr4	GH04I119112	119112821	119114134	1	[{'connected_gene': 'USP53', 'score': 11.44}, {'connected_gene': 'FABP2', 'score': 8.19}, {'connected_gene': 'GC04P119115', 'score': 0.77}, {'connected_gene': 'LOC102723967', 'score': 0.39}]
chr4	GH04I119123	119123041	119124451	0.46	[{'connected_gene': 'USP53', 'score': 20.54}, {'connected_gene': 'FABP2', 'score': 12.39}, {'connected_gene': 'LOC101929762', 'score': 11.35}, {'connected_gene': 'LOC105377395', 'score': 0.77}, {'connected_gene': 'GC04P119115', 'score': 0.44}, {'connected_gene': 'LOC102723967', 'score': 0.34}]
chr4	GH04I119206	119206952	119215071	2.8	[{'connected_gene': 'USP53', 'score': 574.9}, {'connected_gene': 'LOC101929762', 'score': 550.77}, {'connected_gene': 'LOC645513', 'score': 30.9}, {'connected_gene': 'FABP2', 'score': 21.14}, {'connected_gene': 'METTL14', 'score': 10.29}, {'connected_gene': 'LOC729218', 'score': 10.11}, {'connected_gene': 'KLHL2P1', 'score': 6.1}, {'connected_gene': 'MRPL42P1', 'score': 0.37}]
chr4	GH04I119096	119096282	119096952	0.2	[{'connected_gene': 'MYOZ2', 'score': 10.52}, {'connected_gene': 'USP53', 'score': 9.45}, {'connected_gene': 'FABP2', 'score': 5.8}, {'connected_gene': 'LOC102723967', 'score': 0.77}, {'connected_gene': 'GC04M119070', 'score': 0.31}]
chr4	GH04I119319	119319260	119323294	1.02	[{'connected_gene': 'FABP2', 'score': 584.88}, {'connected_gene': 'LOC645513', 'score': 57.32}, {'connected_gene': 'KLHL2P1', 'score': 6.82}, {'connected_gene': 'ENSG00000260091', 'score': 5.34}, {'connected_gene': 'C4orf3', 'score': 0.37}]
chr4	GH04I119285	119284801	119285600	0.6	[{'connected_gene': 'FABP2', 'score': 27.4}, {'connected_gene': 'LOC645513', 'score': 19.43}, {'connected_gene': 'PIR34278', 'score': 0.37}, {'connected_gene': 'GC04P119302', 'score': 0.37}, {'connected_gene': 'LOC101929762', 'score': 0.19}, {'connected_gene': 'USP53', 'score': 0.19}]
chr4	GH04I119833	119833325	119835685	0.2	[{'connected_gene': 'FABP2', 'score': 7.63}, {'connected_gene': 'LOC645513', 'score': 7.05}, {'connected_gene': 'LINC01365', 'score': 0.31}, {'connected_gene': 'ENSG00000250183', 'score': 0.15}]
chr4	GH04I119623	119623210	119632962	2.13	[{'connected_gene': 'LOC105377396', 'score': 550.77}, {'connected_gene': 'GC04M119628', 'score': 550.77}, {'connected_gene': 'GC04P119639', 'score': 550.77}, {'connected_gene': 'PDE5A', 'score': 550.77}, {'connected_gene': 'LOC645513', 'score': 35.45}, {'connected_gene': 'USP53', 'score': 16.66}, {'connected_gene': 'FABP2', 'score': 6.5}, {'connected_gene': 'KLHL2P1', 'score': 5.87}, {'connected_gene': 'ENSG00000260091', 'score': 5.61}]
chr4	GH04I119298	119298111	119301779	2.05	[{'connected_gene': 'PIR34278', 'score': 550.77}, {'connected_gene': 'GC04P119302', 'score': 550.77}, {'connected_gene': 'C4orf3', 'score': 550.77}, {'connected_gene': 'LOC645513', 'score': 50.21}, {'connected_gene': 'FABP2', 'score': 28.8}, {'connected_gene': 'USP53', 'score': 21.49}, {'connected_gene': 'KLHL2P1', 'score': 6.72}, {'connected_gene': 'LOC101929762', 'score': 0.17}]