PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000514165	[[76114757, 76114826], [76128514, 76129052]]	[[76128714, 76129052]]
ENST00000296677	[[76114801, 76115089], [76128514, 76131140]]	[[76115007, 76115089], [76128514, 76129626]]
NM_005242	[[76114801, 76115089], [76128514, 76131140]]	[[76115007, 76115089], [76128514, 76129626]]

Promoter

Chrom	Start	End	Description
chr5	76114796	76114838	CAGE_peak_3_at_F2RL1_5end
chr5	76114847	76114867	CAGE_peak_1_at_F2RL1_5end
chr5	76114872	76114892	CAGE_peak_2_at_F2RL1_5end
chr5	76114932	76114943	CAGE_peak_4_at_F2RL1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I076778	76778996	76779145	0.81	[{'connected_gene': 'RPL7P23', 'score': 35.16}, {'connected_gene': 'AGGF1', 'score': 21.57}, {'connected_gene': 'GC05P076755', 'score': 0.34}, {'connected_gene': 'F2RL1', 'score': 0.28}]
chr5	GH05I076779	76779348	76780053	0.99	[{'connected_gene': 'RPL7P23', 'score': 35.16}, {'connected_gene': 'F2RL1', 'score': 23.92}, {'connected_gene': 'AGGF1', 'score': 21.57}, {'connected_gene': 'GC05P076755', 'score': 0.34}]
chr5	GH05I076830	76830588	76832112	1.1	[{'connected_gene': 'F2RL1', 'score': 39.77}, {'connected_gene': 'ALDH7A1P1', 'score': 16.15}, {'connected_gene': 'ENSG00000225407', 'score': 11.11}, {'connected_gene': 'F2R', 'score': 11.11}, {'connected_gene': 'RNU6ATAC36P', 'score': 10.99}, {'connected_gene': 'CRHBP', 'score': 10.99}, {'connected_gene': 'RN7SL208P', 'score': 0.44}, {'connected_gene': 'GC05P076819', 'score': 0.39}, {'connected_gene': 'GC05P076820', 'score': 0.39}, {'connected_gene': 'GC05P076755', 'score': 0.18}]
chr5	GH05I076804	76804007	76809780	1.65	[{'connected_gene': 'F2RL1', 'score': 42.01}, {'connected_gene': 'ENSG00000225407', 'score': 10.83}, {'connected_gene': 'F2R', 'score': 10.83}, {'connected_gene': 'CRHBP', 'score': 10.11}, {'connected_gene': 'ENSG00000250615', 'score': 9.34}, {'connected_gene': 'GC05P076755', 'score': 0.23}]
chr5	GH05I076793	76793414	76793963	0.2	[{'connected_gene': 'F2RL1', 'score': 15.41}, {'connected_gene': 'ENSG00000225407', 'score': 11.06}, {'connected_gene': 'F2R', 'score': 11.06}, {'connected_gene': 'CRHBP', 'score': 10.67}, {'connected_gene': 'GC05P076755', 'score': 0.28}]
chr5	GH05I076794	76794441	76795402	0.89	[{'connected_gene': 'F2RL1', 'score': 15.87}, {'connected_gene': 'ENSG00000225407', 'score': 11.06}, {'connected_gene': 'F2R', 'score': 11.06}, {'connected_gene': 'CRHBP', 'score': 10.67}, {'connected_gene': 'GC05P076755', 'score': 0.28}]
chr5	GH05I076810	76810566	76811574	0.8	[{'connected_gene': 'F2RL1', 'score': 40.17}, {'connected_gene': 'ENSG00000225407', 'score': 10.71}, {'connected_gene': 'F2R', 'score': 10.7}, {'connected_gene': 'CRHBP', 'score': 10.1}, {'connected_gene': 'GC05P076755', 'score': 0.22}]
chr5	GH05I076786	76786872	76792622	1.65	[{'connected_gene': 'F2RL1', 'score': 28.15}, {'connected_gene': 'F2R', 'score': 22.98}, {'connected_gene': 'ENSG00000225407', 'score': 11.07}, {'connected_gene': 'CRHBP', 'score': 10.66}, {'connected_gene': 'GC05P076755', 'score': 0.29}]
chr5	GH05I076818	76818175	76823728	2.16	[{'connected_gene': 'F2RL1', 'score': 591.34}, {'connected_gene': 'GC05P076819', 'score': 550.77}, {'connected_gene': 'GC05P076820', 'score': 550.77}, {'connected_gene': 'F2R', 'score': 20.28}, {'connected_gene': 'ENSG00000225407', 'score': 11.21}, {'connected_gene': 'RN7SL208P', 'score': 0.37}, {'connected_gene': 'GC05P076755', 'score': 0.2}]
chr5	GH05I076800	76800812	76802001	0.83	[{'connected_gene': 'F2RL1', 'score': 36.72}, {'connected_gene': 'ENSG00000225407', 'score': 11.06}, {'connected_gene': 'F2R', 'score': 11.06}, {'connected_gene': 'LOC101929109', 'score': 10.29}, {'connected_gene': 'IQGAP2', 'score': 10.26}, {'connected_gene': 'ENSG00000250615', 'score': 9.34}, {'connected_gene': 'GC05P076755', 'score': 0.25}]
chr5	GH05I076813	76813691	76817359	1.19	[{'connected_gene': 'F2RL1', 'score': 40.41}, {'connected_gene': 'ENSG00000225407', 'score': 10.69}, {'connected_gene': 'F2R', 'score': 10.69}, {'connected_gene': 'GC05P076755', 'score': 0.22}]
chr5	GH05I076853	76853601	76857915	1.11	[{'connected_gene': 'F2RL1', 'score': 10.11}, {'connected_gene': 'S100Z', 'score': 0.44}, {'connected_gene': 'PIR54977', 'score': 0.28}, {'connected_gene': 'GC05P076755', 'score': 0.15}]
chr5	GH05I076781	76781968	76783677	0.38	[{'connected_gene': 'F2RL1', 'score': 26.1}, {'connected_gene': 'GC05P076755', 'score': 0.31}]
chr5	GH05I076785	76785025	76786491	1.22	[{'connected_gene': 'F2RL1', 'score': 18.18}, {'connected_gene': 'GC05P076755', 'score': 0.31}]
chr5	GH05I076714	76714969	76719355	2.11	[{'connected_gene': 'F2R', 'score': 567.59}, {'connected_gene': 'ENSG00000225407', 'score': 550.77}, {'connected_gene': 'F2RL1', 'score': 11.3}, {'connected_gene': 'AGGF1', 'score': 11.15}, {'connected_gene': 'POC5', 'score': 10.87}, {'connected_gene': 'RPL7P23', 'score': 9.68}, {'connected_gene': 'GC05P076755', 'score': 0.28}]
chr5	GH05I076731	76731811	76733827	0.82	[{'connected_gene': 'F2R', 'score': 15.24}, {'connected_gene': 'F2RL1', 'score': 10.44}, {'connected_gene': 'ENSG00000225407', 'score': 0.37}, {'connected_gene': 'GC05P076755', 'score': 0.34}]
chr5	GH05I076763	76762807	76763965	0.54	[{'connected_gene': 'F2R', 'score': 19.67}, {'connected_gene': 'GC05P076755', 'score': 0.44}, {'connected_gene': 'F2RL1', 'score': 0.22}]
chr5	GH05I076765	76765130	76766214	0.38	[{'connected_gene': 'F2R', 'score': 19.24}, {'connected_gene': 'F2RL1', 'score': 9.28}, {'connected_gene': 'GC05P076755', 'score': 0.44}]
chr5	GH05I076762	76762616	76762765	0.56	[{'connected_gene': 'F2R', 'score': 7.71}, {'connected_gene': 'GC05P076755', 'score': 0.44}, {'connected_gene': 'F2RL1', 'score': 0.22}]
chr5	GH05I076687	76687587	76693813	1.16	[{'connected_gene': 'F2R', 'score': 18.63}, {'connected_gene': 'ENSG00000225407', 'score': 11.63}, {'connected_gene': 'LOC101929109', 'score': 10.51}, {'connected_gene': 'IQGAP2', 'score': 10.39}, {'connected_gene': 'RNU6ATAC36P', 'score': 9.85}, {'connected_gene': 'CRHBP', 'score': 9.85}, {'connected_gene': 'F2RL1', 'score': 6.72}, {'connected_gene': 'ENSG00000277188', 'score': 0.34}, {'connected_gene': 'F2RL2', 'score': 0.2}]
chr5	GH05I076849	76849351	76853479	2.11	[{'connected_gene': 'S100Z', 'score': 553.87}, {'connected_gene': 'F2RL1', 'score': 10.57}, {'connected_gene': 'IQGAP2', 'score': 1.78}, {'connected_gene': 'PIR54977', 'score': 0.26}, {'connected_gene': 'GC05P076755', 'score': 0.15}]
chr5	GH05I076836	76836637	76840936	1.15	[{'connected_gene': 'RN7SL208P', 'score': 550.77}, {'connected_gene': 'F2RL1', 'score': 39.93}, {'connected_gene': 'F2R', 'score': 17.25}, {'connected_gene': 'ENSG00000225407', 'score': 11.11}, {'connected_gene': 'CRHBP', 'score': 11.0}, {'connected_gene': 'RNU6ATAC36P', 'score': 11.0}, {'connected_gene': 'S100Z', 'score': 0.39}, {'connected_gene': 'GC05P076755', 'score': 0.18}]
chr5	GH05I076703	76703180	76705902	0.38	[{'connected_gene': 'LOC101929109', 'score': 10.9}, {'connected_gene': 'IQGAP2', 'score': 10.8}, {'connected_gene': 'F2RL2', 'score': 10.16}, {'connected_gene': 'F2RL1', 'score': 6.98}, {'connected_gene': 'ENSG00000225407', 'score': 5.58}, {'connected_gene': 'F2R', 'score': 4.82}, {'connected_gene': 'ENSG00000277188', 'score': 0.44}]
chr5	GH05I076695	76695357	76697171	0.58	[{'connected_gene': 'LOC101929109', 'score': 10.5}, {'connected_gene': 'IQGAP2', 'score': 10.39}, {'connected_gene': 'ENSG00000225407', 'score': 6.11}, {'connected_gene': 'F2RL1', 'score': 5.91}, {'connected_gene': 'ENSG00000277188', 'score': 0.37}, {'connected_gene': 'F2RL2', 'score': 0.19}]
chr5	GH05I076774	76774401	76775000	1.06	[{'connected_gene': 'GC05P076755', 'score': 0.37}, {'connected_gene': 'F2RL1', 'score': 0.26}]
chr5	GH05I076825	76825816	76827339	0.49	[{'connected_gene': 'ENSG00000225407', 'score': 10.88}, {'connected_gene': 'F2R', 'score': 10.88}, {'connected_gene': 'F2RL1', 'score': 7.27}, {'connected_gene': 'GC05P076819', 'score': 0.44}, {'connected_gene': 'GC05P076820', 'score': 0.44}, {'connected_gene': 'RN7SL208P', 'score': 0.39}, {'connected_gene': 'GC05P076755', 'score': 0.19}]
chr5	GH05I076709	76709317	76712423	0.96	[{'connected_gene': 'ENSG00000277188', 'score': 550.77}, {'connected_gene': 'NCRUPAR', 'score': 550.77}, {'connected_gene': 'F2R', 'score': 12.68}, {'connected_gene': 'F2RL2', 'score': 9.85}, {'connected_gene': 'F2RL1', 'score': 9.33}, {'connected_gene': 'ENSG00000225407', 'score': 0.44}]