Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000319211 [[76011867, 76012220], [76028138, 76031606]] [[76012132, 76012220], [76028138, 76029328]]
ENST00000505600 [[76012023, 76012220], [76012368, 76012613]] [[76012132, 76012220], [76012368, 76012589]]
NM_001992 [[76011867, 76012220], [76028138, 76031605]] [[76012132, 76012220], [76028138, 76029328]]
NM_001311313 [[76011867, 76012220], [76024536, 76024658], [76028138, 76031605]] [[76028413, 76029328]]
Promoter
Chrom Start End Description
chr5 76011569 76011609 CAGE_peak_3_at_F2R_5end
chr5 76011644 76011658 CAGE_peak_11_at_F2R_5end
chr5 76011712 76011734 CAGE_peak_2_at_F2R_5end
chr5 76011801 76011810 CAGE_peak_4_at_F2R_5end
chr5 76011919 76012005 CAGE_peak_1_at_F2R_5end
chr5 76012009 76012010 CAGE_peak_6_at_F2R_5end
chr5 76028742 76028756 CAGE_peak_7_at_F2R_5end
chr5 76028784 76028802 CAGE_peak_10_at_F2R_5end
chr5 76028833 76028850 CAGE_peak_9_at_F2R_5end
chr5 76028971 76028992 CAGE_peak_5_at_F2R_5end
chr5 76029148 76029172 CAGE_peak_13_at_F2R_5end
chr5 76029379 76029398 CAGE_peak_12_at_F2R_5end
chr5 76029666 76029695 CAGE_peak_8_at_F2R_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr5 GH05I076657 76657163 76658685 0.97 [{'connected_gene': 'F2RL2', 'score': 22.2}, {'connected_gene': 'POC5', 'score': 13.87}, {'connected_gene': 'LOC101929109', 'score': 10.93}, {'connected_gene': 'IQGAP2', 'score': 10.75}, {'connected_gene': 'ENSG00000225407', 'score': 10.59}, {'connected_gene': 'F2R', 'score': 10.59}, {'connected_gene': 'GC05P076611', 'score': 0.25}, {'connected_gene': 'ENSG00000277188', 'score': 0.23}]
chr5 GH05I076596 76596565 76597557 0.2 [{'connected_gene': 'F2RL2', 'score': 16.95}, {'connected_gene': 'IQGAP2', 'score': 10.85}, {'connected_gene': 'ENSG00000225407', 'score': 10.27}, {'connected_gene': 'F2R', 'score': 10.27}, {'connected_gene': 'GC05P076600', 'score': 0.77}, {'connected_gene': 'GC05M076583', 'score': 0.44}]
chr5 GH05I076626 76626362 76627279 0.2 [{'connected_gene': 'F2RL2', 'score': 14.49}, {'connected_gene': 'IQGAP2', 'score': 11.81}, {'connected_gene': 'ENSG00000225407', 'score': 10.64}, {'connected_gene': 'F2R', 'score': 10.64}, {'connected_gene': 'GC05P076611', 'score': 0.37}, {'connected_gene': 'ENSG00000277188', 'score': 0.17}]
chr5 GH05I076830 76830588 76832112 1.1 [{'connected_gene': 'F2RL1', 'score': 39.77}, {'connected_gene': 'ALDH7A1P1', 'score': 16.15}, {'connected_gene': 'ENSG00000225407', 'score': 11.11}, {'connected_gene': 'F2R', 'score': 11.11}, {'connected_gene': 'RNU6ATAC36P', 'score': 10.99}, {'connected_gene': 'CRHBP', 'score': 10.99}, {'connected_gene': 'RN7SL208P', 'score': 0.44}, {'connected_gene': 'GC05P076819', 'score': 0.39}, {'connected_gene': 'GC05P076820', 'score': 0.39}, {'connected_gene': 'GC05P076755', 'score': 0.18}]
chr5 GH05I076804 76804007 76809780 1.65 [{'connected_gene': 'F2RL1', 'score': 42.01}, {'connected_gene': 'ENSG00000225407', 'score': 10.83}, {'connected_gene': 'F2R', 'score': 10.83}, {'connected_gene': 'CRHBP', 'score': 10.11}, {'connected_gene': 'ENSG00000250615', 'score': 9.34}, {'connected_gene': 'GC05P076755', 'score': 0.23}]
chr5 GH05I076793 76793414 76793963 0.2 [{'connected_gene': 'F2RL1', 'score': 15.41}, {'connected_gene': 'ENSG00000225407', 'score': 11.06}, {'connected_gene': 'F2R', 'score': 11.06}, {'connected_gene': 'CRHBP', 'score': 10.67}, {'connected_gene': 'GC05P076755', 'score': 0.28}]
chr5 GH05I076794 76794441 76795402 0.89 [{'connected_gene': 'F2RL1', 'score': 15.87}, {'connected_gene': 'ENSG00000225407', 'score': 11.06}, {'connected_gene': 'F2R', 'score': 11.06}, {'connected_gene': 'CRHBP', 'score': 10.67}, {'connected_gene': 'GC05P076755', 'score': 0.28}]
chr5 GH05I076810 76810566 76811574 0.8 [{'connected_gene': 'F2RL1', 'score': 40.17}, {'connected_gene': 'ENSG00000225407', 'score': 10.71}, {'connected_gene': 'F2R', 'score': 10.7}, {'connected_gene': 'CRHBP', 'score': 10.1}, {'connected_gene': 'GC05P076755', 'score': 0.22}]
chr5 GH05I076786 76786872 76792622 1.65 [{'connected_gene': 'F2RL1', 'score': 28.15}, {'connected_gene': 'F2R', 'score': 22.98}, {'connected_gene': 'ENSG00000225407', 'score': 11.07}, {'connected_gene': 'CRHBP', 'score': 10.66}, {'connected_gene': 'GC05P076755', 'score': 0.29}]
chr5 GH05I076818 76818175 76823728 2.16 [{'connected_gene': 'F2RL1', 'score': 591.34}, {'connected_gene': 'GC05P076819', 'score': 550.77}, {'connected_gene': 'GC05P076820', 'score': 550.77}, {'connected_gene': 'F2R', 'score': 20.28}, {'connected_gene': 'ENSG00000225407', 'score': 11.21}, {'connected_gene': 'RN7SL208P', 'score': 0.37}, {'connected_gene': 'GC05P076755', 'score': 0.2}]
chr5 GH05I076800 76800812 76802001 0.83 [{'connected_gene': 'F2RL1', 'score': 36.72}, {'connected_gene': 'ENSG00000225407', 'score': 11.06}, {'connected_gene': 'F2R', 'score': 11.06}, {'connected_gene': 'LOC101929109', 'score': 10.29}, {'connected_gene': 'IQGAP2', 'score': 10.26}, {'connected_gene': 'ENSG00000250615', 'score': 9.34}, {'connected_gene': 'GC05P076755', 'score': 0.25}]
chr5 GH05I076813 76813691 76817359 1.19 [{'connected_gene': 'F2RL1', 'score': 40.41}, {'connected_gene': 'ENSG00000225407', 'score': 10.69}, {'connected_gene': 'F2R', 'score': 10.69}, {'connected_gene': 'GC05P076755', 'score': 0.22}]
chr5 GH05I076735 76735670 76740761 1.78 [{'connected_gene': 'F2R', 'score': 44.48}, {'connected_gene': 'RPL7P23', 'score': 17.96}, {'connected_gene': 'ENSG00000225407', 'score': 13.11}, {'connected_gene': 'IQGAP2', 'score': 2.59}, {'connected_gene': 'GC05P076755', 'score': 0.37}]
chr5 GH05I076714 76714969 76719355 2.11 [{'connected_gene': 'F2R', 'score': 567.59}, {'connected_gene': 'ENSG00000225407', 'score': 550.77}, {'connected_gene': 'F2RL1', 'score': 11.3}, {'connected_gene': 'AGGF1', 'score': 11.15}, {'connected_gene': 'POC5', 'score': 10.87}, {'connected_gene': 'RPL7P23', 'score': 9.68}, {'connected_gene': 'GC05P076755', 'score': 0.28}]
chr5 GH05I076731 76731811 76733827 0.82 [{'connected_gene': 'F2R', 'score': 15.24}, {'connected_gene': 'F2RL1', 'score': 10.44}, {'connected_gene': 'ENSG00000225407', 'score': 0.37}, {'connected_gene': 'GC05P076755', 'score': 0.34}]
chr5 GH05I076763 76762807 76763965 0.54 [{'connected_gene': 'F2R', 'score': 19.67}, {'connected_gene': 'GC05P076755', 'score': 0.44}, {'connected_gene': 'F2RL1', 'score': 0.22}]
chr5 GH05I076765 76765130 76766214 0.38 [{'connected_gene': 'F2R', 'score': 19.24}, {'connected_gene': 'F2RL1', 'score': 9.28}, {'connected_gene': 'GC05P076755', 'score': 0.44}]
chr5 GH05I076762 76762616 76762765 0.56 [{'connected_gene': 'F2R', 'score': 7.71}, {'connected_gene': 'GC05P076755', 'score': 0.44}, {'connected_gene': 'F2RL1', 'score': 0.22}]
chr5 GH05I076683 76683554 76686611 0.92 [{'connected_gene': 'F2R', 'score': 16.55}, {'connected_gene': 'ENSG00000225407', 'score': 11.7}, {'connected_gene': 'LOC101929109', 'score': 11.15}, {'connected_gene': 'IQGAP2', 'score': 11.03}, {'connected_gene': 'ENSG00000277188', 'score': 0.31}, {'connected_gene': 'F2RL2', 'score': 0.21}]
chr5 GH05I076687 76687587 76693813 1.16 [{'connected_gene': 'F2R', 'score': 18.63}, {'connected_gene': 'ENSG00000225407', 'score': 11.63}, {'connected_gene': 'LOC101929109', 'score': 10.51}, {'connected_gene': 'IQGAP2', 'score': 10.39}, {'connected_gene': 'RNU6ATAC36P', 'score': 9.85}, {'connected_gene': 'CRHBP', 'score': 9.85}, {'connected_gene': 'F2RL1', 'score': 6.72}, {'connected_gene': 'ENSG00000277188', 'score': 0.34}, {'connected_gene': 'F2RL2', 'score': 0.2}]
chr5 GH05I076719 76719683 76720228 0.38 [{'connected_gene': 'F2R', 'score': 10.71}, {'connected_gene': 'ENSG00000225407', 'score': 0.77}, {'connected_gene': 'GC05P076755', 'score': 0.28}]
chr5 GH05I076723 76723686 76725707 0.66 [{'connected_gene': 'F2R', 'score': 15.38}, {'connected_gene': 'ENSG00000225407', 'score': 0.44}, {'connected_gene': 'GC05P076755', 'score': 0.29}]
chr5 GH05I076868 76868001 76868201 0.73 [{'connected_gene': 'CRHBP', 'score': 17.96}, {'connected_gene': 'ZBED3-AS1', 'score': 10.29}, {'connected_gene': 'SNORA47', 'score': 10.29}, {'connected_gene': 'ENSG00000225407', 'score': 9.9}, {'connected_gene': 'F2R', 'score': 9.9}, {'connected_gene': 'S100Z', 'score': 0.37}, {'connected_gene': 'PIR54977', 'score': 0.31}, {'connected_gene': 'GC05P076755', 'score': 0.14}]
chr5 GH05I076869 76868216 76868365 0.71 [{'connected_gene': 'CRHBP', 'score': 16.63}, {'connected_gene': 'ZBED3-AS1', 'score': 10.29}, {'connected_gene': 'SNORA47', 'score': 10.29}, {'connected_gene': 'ENSG00000225407', 'score': 9.9}, {'connected_gene': 'F2R', 'score': 9.9}, {'connected_gene': 'S100Z', 'score': 0.37}, {'connected_gene': 'PIR54977', 'score': 0.31}, {'connected_gene': 'GC05P076755', 'score': 0.14}]
chr5 GH05I075715 75715814 75718085 2.08 [{'connected_gene': 'POC5', 'score': 573.14}, {'connected_gene': 'LOC441087', 'score': 550.77}, {'connected_gene': 'RPS26P26', 'score': 32.35}, {'connected_gene': 'NSA2', 'score': 10.74}, {'connected_gene': 'F2R', 'score': 10.1}, {'connected_gene': 'ANKDD1B', 'score': 6.97}, {'connected_gene': 'RNU6-680P', 'score': 0.44}]
chr5 GH05I076836 76836637 76840936 1.15 [{'connected_gene': 'RN7SL208P', 'score': 550.77}, {'connected_gene': 'F2RL1', 'score': 39.93}, {'connected_gene': 'F2R', 'score': 17.25}, {'connected_gene': 'ENSG00000225407', 'score': 11.11}, {'connected_gene': 'CRHBP', 'score': 11.0}, {'connected_gene': 'RNU6ATAC36P', 'score': 11.0}, {'connected_gene': 'S100Z', 'score': 0.39}, {'connected_gene': 'GC05P076755', 'score': 0.18}]
chr5 GH05I076703 76703180 76705902 0.38 [{'connected_gene': 'LOC101929109', 'score': 10.9}, {'connected_gene': 'IQGAP2', 'score': 10.8}, {'connected_gene': 'F2RL2', 'score': 10.16}, {'connected_gene': 'F2RL1', 'score': 6.98}, {'connected_gene': 'ENSG00000225407', 'score': 5.58}, {'connected_gene': 'F2R', 'score': 4.82}, {'connected_gene': 'ENSG00000277188', 'score': 0.44}]
chr5 GH05I076642 76642220 76643037 0.31 [{'connected_gene': 'LOC101929109', 'score': 12.68}, {'connected_gene': 'IQGAP2', 'score': 12.46}, {'connected_gene': 'ENSG00000225407', 'score': 10.92}, {'connected_gene': 'F2R', 'score': 10.92}, {'connected_gene': 'F2RL2', 'score': 7.48}, {'connected_gene': 'GC05P076611', 'score': 0.29}, {'connected_gene': 'ENSG00000277188', 'score': 0.2}]
chr5 GH05I076641 76641616 76641856 0.6 [{'connected_gene': 'LOC101929109', 'score': 12.68}, {'connected_gene': 'IQGAP2', 'score': 12.46}, {'connected_gene': 'ENSG00000225407', 'score': 10.92}, {'connected_gene': 'F2R', 'score': 10.92}, {'connected_gene': 'F2RL2', 'score': 9.29}, {'connected_gene': 'GC05P076611', 'score': 0.29}, {'connected_gene': 'ENSG00000277188', 'score': 0.19}]
chr5 GH05I076591 76591301 76592160 0.31 [{'connected_gene': 'GC05M076583', 'score': 550.77}, {'connected_gene': 'F2RL2', 'score': 11.33}, {'connected_gene': 'ENSG00000225407', 'score': 10.56}, {'connected_gene': 'F2R', 'score': 10.56}, {'connected_gene': 'IQGAP2', 'score': 4.61}, {'connected_gene': 'GC05P076600', 'score': 0.44}]
chr5 GH05I076601 76601576 76601745 0.62 [{'connected_gene': 'GC05P076600', 'score': 550.77}, {'connected_gene': 'F2RL2', 'score': 11.26}, {'connected_gene': 'ENSG00000225407', 'score': 10.17}, {'connected_gene': 'F2R', 'score': 10.17}, {'connected_gene': 'LOC101929109', 'score': 0.44}, {'connected_gene': 'IQGAP2', 'score': 0.08}]
chr5 GH05I076701 76701029 76701965 0.73 [{'connected_gene': 'ENSG00000225407', 'score': 5.68}, {'connected_gene': 'F2R', 'score': 5.1}, {'connected_gene': 'ENSG00000277188', 'score': 0.39}, {'connected_gene': 'F2RL2', 'score': 0.18}, {'connected_gene': 'IQGAP2', 'score': 0.06}]
chr5 GH05I076825 76825816 76827339 0.49 [{'connected_gene': 'ENSG00000225407', 'score': 10.88}, {'connected_gene': 'F2R', 'score': 10.88}, {'connected_gene': 'F2RL1', 'score': 7.27}, {'connected_gene': 'GC05P076819', 'score': 0.44}, {'connected_gene': 'GC05P076820', 'score': 0.44}, {'connected_gene': 'RN7SL208P', 'score': 0.39}, {'connected_gene': 'GC05P076755', 'score': 0.19}]
chr5 GH05I076721 76721201 76721485 1.11 [{'connected_gene': 'ENSG00000225407', 'score': 0.44}, {'connected_gene': 'F2R', 'score': 0.44}, {'connected_gene': 'GC05P076755', 'score': 0.29}]
chr5 GH05I076709 76709317 76712423 0.96 [{'connected_gene': 'ENSG00000277188', 'score': 550.77}, {'connected_gene': 'NCRUPAR', 'score': 550.77}, {'connected_gene': 'F2R', 'score': 12.68}, {'connected_gene': 'F2RL2', 'score': 9.85}, {'connected_gene': 'F2RL1', 'score': 9.33}, {'connected_gene': 'ENSG00000225407', 'score': 0.44}]

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