PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000524325	[[143293440, 143293674], [143310833, 143310940], [143356141, 143356224], [143365773, 143365846], [143381846, 143382005], [143395744, 143395801], [143396363, 143396450], [143399904, 143399995], [143412261, 143412331], [143413114, 143413192], [143425326, 143425833], [143427103, 143427253], [143435997, 143436124], [143484464, 143484601]]	[[143310844, 143310940], [143356141, 143356224], [143365773, 143365846], [143381846, 143382005], [143395744, 143395801], [143396363, 143396450], [143399904, 143399995], [143412261, 143412331], [143413114, 143413192], [143425326, 143425833], [143427103, 143427253], [143435997, 143436085]]
ENST00000307180	[[143293441, 143293674], [143310833, 143310940], [143356141, 143356224], [143365773, 143365846], [143381846, 143382005], [143395744, 143395801], [143396363, 143396453], [143399904, 143399995], [143412261, 143412331], [143413114, 143413192], [143425326, 143425833], [143427103, 143427253], [143435997, 143436124], [143484464, 143484543]]	[[143310844, 143310940], [143356141, 143356224], [143365773, 143365846], [143381846, 143382005], [143395744, 143395801], [143396363, 143396453], [143399904, 143399995], [143412261, 143412331], [143413114, 143413192], [143425326, 143425833], [143427103, 143427253], [143435997, 143436085]]
ENST00000520166	[[143293527, 143293674], [143310833, 143310940], [143356141, 143356224], [143365773, 143365846], [143381846, 143382008], [143395744, 143395801], [143396363, 143396450], [143399904, 143399995], [143412261, 143412331], [143413114, 143413192], [143425326, 143425833], [143427103, 143427253], [143435997, 143436124]]	[[143310844, 143310940], [143356141, 143356224], [143365773, 143365846], [143381846, 143382008], [143395744, 143395801], [143396363, 143396450], [143399904, 143399995], [143412261, 143412331], [143413114, 143413192], [143425326, 143425833], [143427103, 143427253], [143435997, 143436085]]
ENST00000519651	[[143351845, 143353052], [143356141, 143356224], [143365773, 143365846], [143381846, 143382008], [143395744, 143395801], [143396363, 143396450], [143399904, 143399995], [143412261, 143412331], [143413114, 143413192], [143435997, 143436124], [143484464, 143484529]]	[[143353007, 143353052], [143356141, 143356224], [143365773, 143365846], [143381846, 143382008], [143395744, 143395801], [143396363, 143396450], [143399904, 143399995], [143412261, 143412331], [143413114, 143413192], [143435997, 143436085]]
ENST00000518928	[[143381476, 143382005], [143395744, 143395801], [143396363, 143396453], [143399904, 143399995], [143407413, 143407586]]	None
ENST00000521825	[[143352927, 143353052], [143356141, 143356224], [143361220, 143361358]]	None
ENST00000520462	[[143425620, 143425833], [143427103, 143427253], [143435997, 143436124], [143484150, 143484249]]	[[143425620, 143425833], [143427103, 143427253], [143435997, 143436085]]
ENST00000518720	[[143425713, 143425833], [143427103, 143427253], [143435997, 143436124], [143447271, 143447378], [143484464, 143484543]]	[[143425713, 143425833], [143427103, 143427253], [143435997, 143436124], [143447271, 143447280]]
NM_145003	[[143293440, 143293674], [143310833, 143310940], [143356141, 143356224], [143365773, 143365846], [143381846, 143382005], [143395744, 143395801], [143396363, 143396453], [143399904, 143399995], [143412261, 143412331], [143413114, 143413192], [143425326, 143425833], [143427103, 143427253], [143435997, 143436124], [143484464, 143484610]]	[[143310844, 143310940], [143356141, 143356224], [143365773, 143365846], [143381846, 143382005], [143395744, 143395801], [143396363, 143396453], [143399904, 143399995], [143412261, 143412331], [143413114, 143413192], [143425326, 143425833], [143427103, 143427253], [143435997, 143436085]]
NM_001291931	[[143350822, 143353052], [143356141, 143356224], [143365773, 143365846], [143381846, 143382008], [143395744, 143395801], [143396363, 143396450], [143399904, 143399995], [143412261, 143412331], [143413114, 143413192], [143435997, 143436124], [143484464, 143484610]]	[[143353007, 143353052], [143356141, 143356224], [143365773, 143365846], [143381846, 143382008], [143395744, 143395801], [143396363, 143396450], [143399904, 143399995], [143412261, 143412331], [143413114, 143413192], [143435997, 143436085]]

Promoter

Chrom	Start	End	Description
chr8	143484483	143484555	CAGE_peak_1_at_TSNARE1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I142469	142469640	142472723	1.23	[{'connected_gene': 'JRK', 'score': 12.37}, {'connected_gene': 'ZNF696', 'score': 11.41}, {'connected_gene': 'TSNARE1', 'score': 9.84}, {'connected_gene': 'ADGRB1', 'score': 0.34}, {'connected_gene': 'MROH4P', 'score': 0.14}]
chr8	GH08I142599	142599440	142599589	0.52	[{'connected_gene': 'JRK', 'score': 12.47}, {'connected_gene': 'ZNF696', 'score': 11.41}, {'connected_gene': 'TSNARE1', 'score': 9.72}, {'connected_gene': 'ARC', 'score': 0.39}, {'connected_gene': 'MROH4P', 'score': 0.34}]
chr8	GH08I142395	142395520	142395649	0.46	[{'connected_gene': 'JRK', 'score': 12.36}, {'connected_gene': 'ZNF696', 'score': 11.41}, {'connected_gene': 'TSNARE1', 'score': 10.07}, {'connected_gene': 'GC08P142321', 'score': 0.19}]
chr8	GH08I142213	142213240	142213329	0.31	[{'connected_gene': 'LINC00051', 'score': 0.39}, {'connected_gene': 'RN7SL260P', 'score': 0.29}, {'connected_gene': 'GC08M142249', 'score': 0.29}, {'connected_gene': 'TSNARE1', 'score': 0.08}]
chr8	GH08I142216	142215640	142215789	0.2	[{'connected_gene': 'LINC00051', 'score': 0.37}, {'connected_gene': 'RN7SL260P', 'score': 0.29}, {'connected_gene': 'GC08M142249', 'score': 0.29}, {'connected_gene': 'TSNARE1', 'score': 0.09}]
chr8	GH08I142214	142213349	142213389	0.38	[{'connected_gene': 'LINC00051', 'score': 0.37}, {'connected_gene': 'RN7SL260P', 'score': 0.29}, {'connected_gene': 'GC08M142249', 'score': 0.29}, {'connected_gene': 'TSNARE1', 'score': 0.09}]
chr8	GH08I142451	142451037	142451361	0.83	[{'connected_gene': 'ADGRB1', 'score': 555.12}, {'connected_gene': 'LYNX1', 'score': 10.23}, {'connected_gene': 'TSNARE1', 'score': 1.76}, {'connected_gene': 'MROH4P', 'score': 0.13}]
chr8	GH08I142272	142272287	142272457	0.56	[{'connected_gene': 'ADGRB1', 'score': 1.7}, {'connected_gene': 'TSNARE1', 'score': 1.66}, {'connected_gene': 'PIR44902', 'score': 0.77}, {'connected_gene': 'RN7SL260P', 'score': 0.34}, {'connected_gene': 'GC08M142249', 'score': 0.34}]
chr8	GH08I142447	142447560	142447938	0.96	[{'connected_gene': 'ADGRB1', 'score': 550.77}, {'connected_gene': 'TSNARE1', 'score': 3.45}, {'connected_gene': 'ENSG00000261693', 'score': 0.26}]
chr8	GH08I142234	142234388	142236407	0.71	[{'connected_gene': 'ADGRB1', 'score': 6.65}, {'connected_gene': 'RN7SL260P', 'score': 0.39}, {'connected_gene': 'GC08M142249', 'score': 0.39}, {'connected_gene': 'LINC00051', 'score': 0.28}, {'connected_gene': 'TSNARE1', 'score': 0.1}]
chr8	GH08I142725	142725628	142728829	2.54	[{'connected_gene': 'THEM6', 'score': 556.54}, {'connected_gene': 'ENSG00000253806', 'score': 550.77}, {'connected_gene': 'LOC100288181', 'score': 550.77}, {'connected_gene': 'LY6K', 'score': 44.33}, {'connected_gene': 'JRK', 'score': 32.96}, {'connected_gene': 'ZNF623', 'score': 22.96}, {'connected_gene': 'ZNF696', 'score': 20.92}, {'connected_gene': 'ENSG00000255050', 'score': 13.26}, {'connected_gene': 'ZC3H3', 'score': 12.47}, {'connected_gene': 'GLI4', 'score': 11.78}, {'connected_gene': 'ZNF707', 'score': 10.88}, {'connected_gene': 'AK3P2', 'score': 10.81}, {'connected_gene': 'EEF1D', 'score': 10.21}, {'connected_gene': 'TSNARE1', 'score': 9.69}, {'connected_gene': 'LYNX1', 'score': 5.66}, {'connected_gene': 'PSCA', 'score': 4.86}]
chr8	GH08I142990	142990820	142995179	0.96	[{'connected_gene': 'C8orf31', 'score': 18.37}, {'connected_gene': 'LY6E-DT', 'score': 13.9}, {'connected_gene': 'CYP11B2', 'score': 11.05}, {'connected_gene': 'LY6D', 'score': 10.67}, {'connected_gene': 'ENSG00000253715', 'score': 10.67}, {'connected_gene': 'TSNARE1', 'score': 4.95}, {'connected_gene': 'LYPD2', 'score': 3.03}, {'connected_gene': 'CDC42P3', 'score': 0.77}, {'connected_gene': 'LOC105375794', 'score': 0.2}]
chr8	GH08I142614	142614040	142615629	1.9	[{'connected_gene': 'ARC', 'score': 556.33}, {'connected_gene': 'JRK', 'score': 30.73}, {'connected_gene': 'ZNF696', 'score': 11.41}, {'connected_gene': 'TSNARE1', 'score': 9.71}, {'connected_gene': 'ENSG00000261044', 'score': 0.44}]
chr8	GH08I142452	142452580	142453260	1.73	[{'connected_gene': 'TSNARE1', 'score': 17.79}, {'connected_gene': 'JRK', 'score': 12.37}, {'connected_gene': 'ZNF696', 'score': 11.41}, {'connected_gene': 'LYNX1', 'score': 2.02}, {'connected_gene': 'ADGRB1', 'score': 1.9}, {'connected_gene': 'MROH4P', 'score': 0.13}]
chr8	GH08I142368	142368204	142369037	0.91	[{'connected_gene': 'TSNARE1', 'score': 14.62}, {'connected_gene': 'JRK', 'score': 12.36}, {'connected_gene': 'ENSG00000261693', 'score': 11.84}, {'connected_gene': 'ZNF696', 'score': 11.41}, {'connected_gene': 'GC08P142321', 'score': 0.25}]
chr8	GH08I142401	142401562	142404289	1.98	[{'connected_gene': 'TSNARE1', 'score': 573.36}, {'connected_gene': 'ENSG00000261693', 'score': 563.2}, {'connected_gene': 'JRK', 'score': 12.36}, {'connected_gene': 'ZNF696', 'score': 11.41}, {'connected_gene': 'GC08P142321', 'score': 0.18}]
chr8	GH08I142200	142200492	142201472	0.91	[{'connected_gene': 'TSNARE1', 'score': 3.56}, {'connected_gene': 'LINC00051', 'score': 0.77}, {'connected_gene': 'RN7SL260P', 'score': 0.25}, {'connected_gene': 'GC08M142249', 'score': 0.25}]
chr8	GH08I142325	142325086	142327574	0.65	[{'connected_gene': 'TSNARE1', 'score': 24.15}, {'connected_gene': 'ADGRB1', 'score': 10.32}, {'connected_gene': 'ENSG00000261693', 'score': 7.94}, {'connected_gene': 'GC08P142321', 'score': 0.77}]
chr8	GH08I142382	142382010	142384159	1.11	[{'connected_gene': 'TSNARE1', 'score': 17.23}, {'connected_gene': 'ADGRB1', 'score': 4.6}, {'connected_gene': 'GC08P142321', 'score': 0.21}]
chr8	GH08I142453	142453546	142453695	0.74	[{'connected_gene': 'TSNARE1', 'score': 3.19}, {'connected_gene': 'CYP11B2', 'score': 1.49}, {'connected_gene': 'ADGRB1', 'score': 0.77}, {'connected_gene': 'MROH4P', 'score': 0.13}]
chr8	GH08I141430	141430881	141431153	0.66	[{'connected_gene': 'TSNARE1', 'score': 9.66}, {'connected_gene': 'FP248', 'score': 0.77}, {'connected_gene': 'PIR43419', 'score': 0.37}, {'connected_gene': 'PTP4A3', 'score': 0.28}]
chr8	GH08I141625	141625121	141625270	0.8	[{'connected_gene': 'TSNARE1', 'score': 9.66}, {'connected_gene': 'GC08P141529', 'score': 0.15}, {'connected_gene': 'MIR1302-7', 'score': 0.1}]
chr8	GH08I142030	142030140	142031373	0.93	[{'connected_gene': 'TSNARE1', 'score': 1.55}, {'connected_gene': 'GC08M142020', 'score': 0.77}, {'connected_gene': 'ENSG00000261710', 'score': 0.22}]
chr8	GH08I142340	142339810	142341000	1	[{'connected_gene': 'TSNARE1', 'score': 20.9}, {'connected_gene': 'ENSG00000261693', 'score': 12.14}, {'connected_gene': 'GC08P142321', 'score': 0.37}]
chr8	GH08I142393	142393840	142394122	0.91	[{'connected_gene': 'TSNARE1', 'score': 0.44}, {'connected_gene': 'GC08P142321', 'score': 0.19}]
chr8	GH08I142230	142230572	142230751	0.39	[{'connected_gene': 'RN7SL260P', 'score': 0.37}, {'connected_gene': 'GC08M142249', 'score': 0.37}, {'connected_gene': 'LINC00051', 'score': 0.29}, {'connected_gene': 'TSNARE1', 'score': 0.09}]
chr8	GH08I141433	141433707	141434497	0.77	[{'connected_gene': 'FP248', 'score': 555.86}, {'connected_gene': 'TSNARE1', 'score': 9.66}, {'connected_gene': 'PTK2', 'score': 4.96}, {'connected_gene': 'PIR43419', 'score': 0.34}, {'connected_gene': 'MROH5', 'score': 0.19}]
chr8	GH08I142215	142213972	142215312	0.31	[{'connected_gene': 'ENSG00000261693', 'score': 4.88}, {'connected_gene': 'LINC00051', 'score': 0.37}, {'connected_gene': 'RN7SL260P', 'score': 0.29}, {'connected_gene': 'GC08M142249', 'score': 0.29}, {'connected_gene': 'TSNARE1', 'score': 0.09}]
chr8	GH08I142322	142322710	142323145	0.27	[{'connected_gene': 'GC08P142321', 'score': 550.77}, {'connected_gene': 'ADGRB1', 'score': 13.45}, {'connected_gene': 'TSNARE1', 'score': 12.65}]
chr8	GH08I142298	142298180	142298329	0.43	[{'connected_gene': 'PIR44902', 'score': 0.34}, {'connected_gene': 'GC08P142321', 'score': 0.34}, {'connected_gene': 'TSNARE1', 'score': 0.14}]
chr8	GH08I142398	142398834	142400355	0.8	[{'connected_gene': 'ENSG00000261693', 'score': 12.71}, {'connected_gene': 'TSNARE1', 'score': 0.77}, {'connected_gene': 'GC08P142321', 'score': 0.18}]
chr8	GH08I142339	142339600	142339801	0.31	[{'connected_gene': 'GC08P142321', 'score': 0.37}, {'connected_gene': 'TSNARE1', 'score': 0.21}]
chr8	GH08I142324	142323689	142323898	0.55	[{'connected_gene': 'GC08P142321', 'score': 550.77}, {'connected_gene': 'TSNARE1', 'score': 3.68}]
chr8	GH08I142323	142322105	142322229	0.27	[{'connected_gene': 'GC08P142321', 'score': 550.77}, {'connected_gene': 'TSNARE1', 'score': 2.63}]
chr8	GH08I142277	142277359	142278209	0.31	[{'connected_gene': 'PIR44902', 'score': 550.77}, {'connected_gene': 'GC08P142321', 'score': 0.26}, {'connected_gene': 'TSNARE1', 'score': 0.13}]
chr8	GH08I141410	141410013	141419430	2.01	[{'connected_gene': 'PIR43419', 'score': 550.77}, {'connected_gene': 'FP248', 'score': 11.89}, {'connected_gene': 'TSNARE1', 'score': 9.66}, {'connected_gene': 'LINC01300', 'score': 5.78}, {'connected_gene': 'ENSG00000244998', 'score': 4.72}, {'connected_gene': 'PTP4A3', 'score': 3.08}]