PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000378743	[[72003251, 72004345], [72004474, 72004537], [72004837, 72004877], [72005565, 72005667], [72007114, 72007215], [72008314, 72008480], [72008613, 72008718], [72008985, 72009096], [72013094, 72013189], [72013705, 72013904], [72013989, 72014095], [72017139, 72017377], [72017883, 72018072], [72020039, 72020226], [72021530, 72021714], [72022697, 72022817], [72023388, 72023490], [72024379, 72024501], [72024602, 72024734], [72025557, 72025667], [72025751, 72026294], [72026665, 72026797], [72027043, 72027218], [72027934, 72028084], [72028483, 72028605], [72029222, 72029360], [72030269, 72030434], [72030629, 72030839], [72032197, 72032295], [72036215, 72036339], [72037874, 72038098], [72038656, 72038855], [72041528, 72041593], [72050664, 72051081], [72056792, 72057749]]	[[72004207, 72004345], [72004474, 72004537], [72004837, 72004877], [72005565, 72005667], [72007114, 72007215], [72008314, 72008480], [72008613, 72008718], [72008985, 72009096], [72013094, 72013189], [72013705, 72013904], [72013989, 72014095], [72017139, 72017377], [72017883, 72018072], [72020039, 72020226], [72021530, 72021714], [72022697, 72022817], [72023388, 72023490], [72024379, 72024501], [72024602, 72024734], [72025557, 72025667], [72025751, 72026294], [72026665, 72026797], [72027043, 72027218], [72027934, 72028084], [72028483, 72028605], [72029222, 72029360], [72030269, 72030434], [72030629, 72030839], [72032197, 72032295], [72036215, 72036339], [72037874, 72038098], [72038656, 72038855], [72041528, 72041593], [72050664, 72051081], [72056792, 72057390]]
ENST00000552994	[[72003477, 72004345], [72004474, 72004537], [72004837, 72005667], [72007114, 72007215], [72008314, 72008480], [72008613, 72008718], [72008985, 72009096], [72013094, 72013189], [72013705, 72013904], [72013989, 72014095], [72017139, 72017377], [72017883, 72018072], [72020039, 72020226], [72021530, 72021714], [72022697, 72022817], [72023388, 72023490], [72024379, 72024501], [72024602, 72024734], [72025557, 72025667], [72025751, 72026294], [72026665, 72026797], [72027043, 72027218], [72027934, 72028084], [72028483, 72028605], [72029222, 72029360], [72030269, 72030434], [72030629, 72030839], [72032197, 72032295], [72036215, 72036339], [72037874, 72038098], [72038656, 72038855], [72041528, 72041593], [72050664, 72051081], [72056792, 72057599]]	[[72005561, 72005667], [72007114, 72007215], [72008314, 72008480], [72008613, 72008718], [72008985, 72009096], [72013094, 72013189], [72013705, 72013904], [72013989, 72014095], [72017139, 72017377], [72017883, 72018072], [72020039, 72020226], [72021530, 72021714], [72022697, 72022817], [72023388, 72023490], [72024379, 72024501], [72024602, 72024734], [72025557, 72025667], [72025751, 72026294], [72026665, 72026797], [72027043, 72027218], [72027934, 72028084], [72028483, 72028605], [72029222, 72029360], [72030269, 72030434], [72030629, 72030839], [72032197, 72032295], [72036215, 72036339], [72037874, 72038098], [72038656, 72038855], [72041528, 72041593], [72050664, 72051081], [72056792, 72057390]]
ENST00000550963	[[72003889, 72004537], [72004837, 72005034]]	None
ENST00000547398	[[72004167, 72004345], [72004474, 72004537], [72004837, 72005066]]	None
ENST00000551487	[[72005335, 72005667], [72007114, 72007528]]	None
ENST00000546475	[[72007146, 72007215], [72008314, 72008480], [72008613, 72008928]]	None
ENST00000546771	[[72008850, 72009096], [72013094, 72013189], [72013705, 72013745]]	None
ENST00000546606	[[72026002, 72026294], [72026665, 72026871]]	None
ENST00000550712	[[72038693, 72038855], [72041528, 72041593], [72054068, 72054207], [72061300, 72061505]]	None
ENST00000548100	[[72050122, 72051081], [72056792, 72057604]]	[[72050638, 72051081], [72056792, 72057390]]
ENST00000552037	[[72050122, 72050343], [72050664, 72051081], [72056792, 72057638]]	[[72050281, 72050343], [72050664, 72051081], [72056792, 72057390]]
ENST00000549407	[[72050662, 72051081], [72054150, 72054207], [72056764, 72057140]]	None
NM_144982	[[72003378, 72004345], [72004474, 72004537], [72004837, 72004877], [72005565, 72005667], [72007114, 72007215], [72008314, 72008480], [72008613, 72008718], [72008985, 72009096], [72013094, 72013189], [72013705, 72013904], [72013989, 72014095], [72017139, 72017377], [72017883, 72018072], [72020039, 72020226], [72021530, 72021714], [72022697, 72022817], [72023388, 72023490], [72024379, 72024501], [72024602, 72024734], [72025557, 72025667], [72025751, 72026294], [72026665, 72026797], [72027043, 72027218], [72027934, 72028084], [72028483, 72028605], [72029222, 72029360], [72030269, 72030434], [72030629, 72030839], [72032197, 72032295], [72036215, 72036339], [72037874, 72038098], [72038656, 72038855], [72041528, 72041593], [72050664, 72051081], [72056792, 72057749]]	[[72004207, 72004345], [72004474, 72004537], [72004837, 72004877], [72005565, 72005667], [72007114, 72007215], [72008314, 72008480], [72008613, 72008718], [72008985, 72009096], [72013094, 72013189], [72013705, 72013904], [72013989, 72014095], [72017139, 72017377], [72017883, 72018072], [72020039, 72020226], [72021530, 72021714], [72022697, 72022817], [72023388, 72023490], [72024379, 72024501], [72024602, 72024734], [72025557, 72025667], [72025751, 72026294], [72026665, 72026797], [72027043, 72027218], [72027934, 72028084], [72028483, 72028605], [72029222, 72029360], [72030269, 72030434], [72030629, 72030839], [72032197, 72032295], [72036215, 72036339], [72037874, 72038098], [72038656, 72038855], [72041528, 72041593], [72050664, 72051081], [72056792, 72057390]]

Promoter

Chrom	Start	End	Description
chr12	72057516	72057527	CAGE_peak_5_at_ZFC3H1_5end
chr12	72057571	72057605	CAGE_peak_3_at_ZFC3H1_5end
chr12	72057607	72057636	CAGE_peak_1_at_ZFC3H1_5end
chr12	72057639	72057678	CAGE_peak_2_at_ZFC3H1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I071838	71838209	71841754	2.29	[{'connected_gene': 'TBC1D15', 'score': 562.69}, {'connected_gene': 'ZFC3H1', 'score': 16.42}, {'connected_gene': 'MRS2P2', 'score': 0.39}]
chr12	GH12I071654	71654469	71656364	0.62	[{'connected_gene': 'TMEM19', 'score': 11.55}, {'connected_gene': 'ENSG00000257515', 'score': 6.39}, {'connected_gene': 'THAP2', 'score': 0.44}, {'connected_gene': 'ZFC3H1', 'score': 0.39}, {'connected_gene': 'ENSG00000212461', 'score': 0.37}]
chr12	GH12I071747	71747101	71747250	0.64	[{'connected_gene': 'TMEM19', 'score': 11.39}, {'connected_gene': 'ZFC3H1', 'score': 11.13}, {'connected_gene': 'THAP2', 'score': 11.12}, {'connected_gene': 'ENSG00000212461', 'score': 10.96}, {'connected_gene': 'RAB21', 'score': 0.44}, {'connected_gene': 'ENSG00000257515', 'score': 0.28}]
chr12	GH12I071650	71650447	71653218	0.56	[{'connected_gene': 'TMEM19', 'score': 11.55}, {'connected_gene': 'ENSG00000257515', 'score': 7.26}, {'connected_gene': 'ZFC3H1', 'score': 5.32}, {'connected_gene': 'THAP2', 'score': 0.39}, {'connected_gene': 'ENSG00000212461', 'score': 0.39}]
chr12	GH12I071658	71658352	71660740	0.2	[{'connected_gene': 'TMEM19', 'score': 11.56}, {'connected_gene': 'ENSG00000212461', 'score': 11.49}, {'connected_gene': 'ENSG00000257515', 'score': 7.32}, {'connected_gene': 'ZFC3H1', 'score': 4.57}, {'connected_gene': 'THAP2', 'score': 0.77}]
chr12	GH12I071719	71719592	71720743	0.31	[{'connected_gene': 'TMEM19', 'score': 11.25}, {'connected_gene': 'ZFC3H1', 'score': 10.99}, {'connected_gene': 'ENSG00000257515', 'score': 6.51}, {'connected_gene': 'RAB21', 'score': 0.29}]
chr12	GH12I071731	71731471	71732469	1.13	[{'connected_gene': 'TMEM19', 'score': 11.77}, {'connected_gene': 'ZFC3H1', 'score': 11.57}, {'connected_gene': 'ENSG00000257515', 'score': 6.69}, {'connected_gene': 'RAB21', 'score': 0.34}]
chr12	GH12I071721	71721888	71722428	0.62	[{'connected_gene': 'TMEM19', 'score': 11.23}, {'connected_gene': 'ZFC3H1', 'score': 10.99}, {'connected_gene': 'ENSG00000257515', 'score': 0.39}, {'connected_gene': 'RAB21', 'score': 0.29}]
chr12	GH12I071753	71753104	71753160	0.89	[{'connected_gene': 'RAB21', 'score': 550.77}, {'connected_gene': 'TMEM19', 'score': 11.42}, {'connected_gene': 'ZFC3H1', 'score': 11.24}, {'connected_gene': 'THAP2', 'score': 11.23}, {'connected_gene': 'ENSG00000212461', 'score': 10.82}, {'connected_gene': 'ENSG00000257515', 'score': 0.26}]
chr12	GH12I071754	71754080	71756872	2.06	[{'connected_gene': 'RAB21', 'score': 550.77}, {'connected_gene': 'ZFC3H1', 'score': 31.45}, {'connected_gene': 'TBC1D15', 'score': 10.15}, {'connected_gene': 'ENSG00000257410', 'score': 0.26}]
chr12	GH12I071661	71661475	71666229	2.31	[{'connected_gene': 'ZFC3H1', 'score': 550.77}, {'connected_gene': 'THAP2', 'score': 550.77}, {'connected_gene': 'TMEM19', 'score': 10.76}, {'connected_gene': 'ENSG00000257515', 'score': 7.4}]
chr12	GH12I071625	71625973	71627867	1.08	[{'connected_gene': 'ZFC3H1', 'score': 15.67}, {'connected_gene': 'THAP2', 'score': 11.18}, {'connected_gene': 'ENSG00000257515', 'score': 7.14}, {'connected_gene': 'GC12P071640', 'score': 0.39}, {'connected_gene': 'ENSG00000257761', 'score': 0.26}]
chr12	GH12I071607	71607726	71609130	0.2	[{'connected_gene': 'ZFC3H1', 'score': 14.95}, {'connected_gene': 'ENSG00000212461', 'score': 11.56}, {'connected_gene': 'THAP2', 'score': 11.0}, {'connected_gene': 'ENSG00000257515', 'score': 7.11}, {'connected_gene': 'ENSG00000257761', 'score': 0.34}, {'connected_gene': 'GC12P071640', 'score': 0.29}]
chr12	GH12I071667	71667006	71667889	0.31	[{'connected_gene': 'ZFC3H1', 'score': 550.77}, {'connected_gene': 'ENSG00000257515', 'score': 7.42}, {'connected_gene': 'THAP2', 'score': 0.77}]
chr12	GH12I071648	71648976	71650096	0.31	[{'connected_gene': 'ZFC3H1', 'score': 4.47}, {'connected_gene': 'THAP2', 'score': 0.39}, {'connected_gene': 'ENSG00000212461', 'score': 0.39}]
chr12	GH12I071641	71641027	71643329	0.77	[{'connected_gene': 'ZFC3H1', 'score': 11.66}, {'connected_gene': 'ENSG00000257515', 'score': 7.21}, {'connected_gene': 'ENSG00000212461', 'score': 0.77}, {'connected_gene': 'THAP2', 'score': 0.34}]
chr12	GH12I071668	71668375	71669638	0.2	[{'connected_gene': 'ZFC3H1', 'score': 550.77}, {'connected_gene': 'ENSG00000258064', 'score': 0.44}, {'connected_gene': 'THAP2', 'score': 0.44}]
chr12	GH12I071643	71643658	71648841	0.43	[{'connected_gene': 'ZFC3H1', 'score': 15.62}, {'connected_gene': 'ENSG00000257515', 'score': 7.23}, {'connected_gene': 'ENSG00000212461', 'score': 0.44}, {'connected_gene': 'THAP2', 'score': 0.37}]
chr12	GH12I071693	71693404	71695452	0.84	[{'connected_gene': 'ZFC3H1', 'score': 11.56}, {'connected_gene': 'ENSG00000257515', 'score': 8.56}, {'connected_gene': 'TMEM19', 'score': 5.2}, {'connected_gene': 'ENSG00000258064', 'score': 0.34}]
chr12	GH12I071609	71609729	71611270	0.51	[{'connected_gene': 'ENSG00000212461', 'score': 11.58}, {'connected_gene': 'THAP2', 'score': 11.0}, {'connected_gene': 'ZFC3H1', 'score': 10.99}, {'connected_gene': 'GC12P071640', 'score': 0.31}, {'connected_gene': 'ENSG00000257761', 'score': 0.31}]
chr12	GH12I071671	71671721	71672352	1.03	[{'connected_gene': 'ENSG00000257515', 'score': 6.22}, {'connected_gene': 'TMEM19', 'score': 4.69}, {'connected_gene': 'ZFC3H1', 'score': 0.77}, {'connected_gene': 'ENSG00000258064', 'score': 0.77}, {'connected_gene': 'THAP2', 'score': 0.44}]
chr12	GH12I071709	71709677	71711350	0.83	[{'connected_gene': 'ENSG00000257515', 'score': 557.44}, {'connected_gene': 'TMEM19', 'score': 12.17}, {'connected_gene': 'ZFC3H1', 'score': 11.08}, {'connected_gene': 'RAB21', 'score': 0.26}]
chr12	GH12I071638	71638440	71640633	0.57	[{'connected_gene': 'GC12P071640', 'score': 550.77}, {'connected_gene': 'ENSG00000212461', 'score': 550.77}, {'connected_gene': 'ZFC3H1', 'score': 17.04}, {'connected_gene': 'THAP2', 'score': 12.1}, {'connected_gene': 'ENSG00000257515', 'score': 7.19}, {'connected_gene': 'LGR5', 'score': 5.13}]
chr12	GH12I071611	71611673	71613896	0.31	[{'connected_gene': 'ENSG00000212461', 'score': 11.94}, {'connected_gene': 'ZFC3H1', 'score': 11.21}, {'connected_gene': 'THAP2', 'score': 11.13}, {'connected_gene': 'ENSG00000257515', 'score': 7.12}, {'connected_gene': 'GC12P071640', 'score': 0.31}, {'connected_gene': 'ENSG00000257761', 'score': 0.31}]
chr12	GH12I071636	71636480	71637010	0.76	[{'connected_gene': 'GC12P071640', 'score': 0.77}, {'connected_gene': 'ZFC3H1', 'score': 0.29}, {'connected_gene': 'ENSG00000257761', 'score': 0.23}]