PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000426959	[[123363090, 123367919], [123370018, 123370288], [123374673, 123374817], [123384893, 123385033], [123421651, 123421853], [123452203, 123452273], [123453687, 123453752], [123476035, 123476612]]	[[123367467, 123367919], [123370018, 123370288], [123374673, 123374817], [123384893, 123385033], [123421651, 123421853], [123452203, 123452273], [123453687, 123453752], [123476035, 123476612]]
ENST00000373930	[[123363090, 123367919], [123370018, 123370288], [123374673, 123374817], [123384893, 123385033], [123421651, 123421853], [123476035, 123476748]]	[[123367467, 123367919], [123370018, 123370288], [123374673, 123374817], [123384893, 123385033], [123421651, 123421853], [123476035, 123476636]]
NM_001080497	[[123363195, 123367919], [123370018, 123370288], [123374673, 123374817], [123384893, 123385033], [123421651, 123421853], [123476035, 123476765]]	[[123367467, 123367919], [123370018, 123370288], [123374673, 123374817], [123384893, 123385033], [123421651, 123421853], [123476035, 123476636]]

Promoter

Chrom	Start	End	Description
chr9	123476111	123476124	CAGE_peak_7_at_MEGF9_5end
chr9	123476423	123476432	CAGE_peak_5_at_MEGF9_5end
chr9	123476680	123476698	CAGE_peak_2_at_MEGF9_5end
chr9	123476699	123476713	CAGE_peak_3_at_MEGF9_5end
chr9	123476719	123476810	CAGE_peak_1_at_MEGF9_5end
chr9	123476819	123476830	CAGE_peak_4_at_MEGF9_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I120755	120755801	120756092	0.92	[{'connected_gene': 'PSMD5', 'score': 22.61}, {'connected_gene': 'CUTALP', 'score': 12.12}, {'connected_gene': 'MEGF9', 'score': 11.1}, {'connected_gene': 'AHCYP2', 'score': 0.28}, {'connected_gene': 'FBXW2', 'score': 0.28}, {'connected_gene': 'PIR59216', 'score': 0.28}]
chr9	GH09I120578	120578740	120581192	2.07	[{'connected_gene': 'CDK5RAP2', 'score': 558.57}, {'connected_gene': 'PIR42935', 'score': 550.77}, {'connected_gene': 'PSMD5', 'score': 25.44}, {'connected_gene': 'FBXW2', 'score': 25.31}, {'connected_gene': 'CNTRL', 'score': 10.68}, {'connected_gene': 'ENSG00000270917', 'score': 9.93}, {'connected_gene': 'MEGF9', 'score': 4.26}, {'connected_gene': 'PIR33352', 'score': 0.18}]
chr9	GH09I120613	120613630	120614934	0.2	[{'connected_gene': 'CDK5RAP2', 'score': 11.1}, {'connected_gene': 'CUTALP', 'score': 4.64}, {'connected_gene': 'PIR45570', 'score': 0.44}, {'connected_gene': 'MEGF9', 'score': 0.15}]
chr9	GH09I120625	120625201	120625601	0.58	[{'connected_gene': 'CDK5RAP2', 'score': 9.8}, {'connected_gene': 'CUTALP', 'score': 4.4}, {'connected_gene': 'PIR45570', 'score': 0.77}, {'connected_gene': 'MEGF9', 'score': 0.17}]
chr9	GH09I120683	120683763	120685413	1.56	[{'connected_gene': 'CUTALP', 'score': 28.46}, {'connected_gene': 'TRAF1', 'score': 11.98}, {'connected_gene': 'MEGF9', 'score': 0.31}, {'connected_gene': 'PIR45570', 'score': 0.21}]
chr9	GH09I120704	120704386	120707984	0.54	[{'connected_gene': 'CUTALP', 'score': 28.71}, {'connected_gene': 'CDK5RAP2', 'score': 9.89}, {'connected_gene': 'MEGF9', 'score': 0.44}, {'connected_gene': 'PIR45570', 'score': 0.18}]
chr9	GH09I120608	120608361	120609725	0.38	[{'connected_gene': 'CUTALP', 'score': 20.78}, {'connected_gene': 'PIR45570', 'score': 0.39}, {'connected_gene': 'CDK5RAP2', 'score': 0.31}, {'connected_gene': 'MEGF9', 'score': 0.14}]
chr9	GH09I120702	120702212	120704030	0.63	[{'connected_gene': 'CUTALP', 'score': 28.62}, {'connected_gene': 'CDK5RAP2', 'score': 10.67}, {'connected_gene': 'MEGF9', 'score': 0.39}, {'connected_gene': 'PIR45570', 'score': 0.18}]
chr9	GH09I120716	120716938	120717478	0.63	[{'connected_gene': 'CUTALP', 'score': 32.7}, {'connected_gene': 'AHCYP2', 'score': 0.77}, {'connected_gene': 'MEGF9', 'score': 0.77}]
chr9	GH09I120734	120734402	120736800	1.28	[{'connected_gene': 'CUTALP', 'score': 31.19}, {'connected_gene': 'MEGF9', 'score': 12.83}, {'connected_gene': 'TRAF1', 'score': 10.93}, {'connected_gene': 'PSMD5', 'score': 8.36}, {'connected_gene': 'AHCYP2', 'score': 0.37}, {'connected_gene': 'PIR59216', 'score': 0.22}]
chr9	GH09I120666	120666435	120672797	0.6	[{'connected_gene': 'CUTALP', 'score': 41.02}, {'connected_gene': 'MEGF9', 'score': 12.22}, {'connected_gene': 'PSMD5', 'score': 12.19}, {'connected_gene': 'CNTRL', 'score': 10.12}, {'connected_gene': 'CDK5RAP2', 'score': 10.1}, {'connected_gene': 'PIR45570', 'score': 0.25}]
chr9	GH09I120640	120640886	120646878	0.69	[{'connected_gene': 'CUTALP', 'score': 28.5}, {'connected_gene': 'MEGF9', 'score': 11.46}, {'connected_gene': 'CDK5RAP2', 'score': 10.68}, {'connected_gene': 'PIR45570', 'score': 0.34}]
chr9	GH09I120662	120662262	120665107	0.54	[{'connected_gene': 'CUTALP', 'score': 26.03}, {'connected_gene': 'MEGF9', 'score': 12.03}, {'connected_gene': 'CDK5RAP2', 'score': 10.11}, {'connected_gene': 'PIR45570', 'score': 0.26}]
chr9	GH09I120658	120658297	120661414	0.52	[{'connected_gene': 'CUTALP', 'score': 27.7}, {'connected_gene': 'MEGF9', 'score': 11.48}, {'connected_gene': 'CDK5RAP2', 'score': 9.99}, {'connected_gene': 'PIR45570', 'score': 0.28}]
chr9	GH09I120673	120673878	120675259	0.31	[{'connected_gene': 'CUTALP', 'score': 24.52}, {'connected_gene': 'MEGF9', 'score': 0.28}, {'connected_gene': 'PIR45570', 'score': 0.23}]
chr9	GH09I120676	120676423	120677400	0.6	[{'connected_gene': 'CUTALP', 'score': 6.73}, {'connected_gene': 'MEGF9', 'score': 0.28}, {'connected_gene': 'PIR45570', 'score': 0.23}]
chr9	GH09I120647	120647481	120651549	0.67	[{'connected_gene': 'CUTALP', 'score': 28.23}, {'connected_gene': 'PIR45570', 'score': 0.31}, {'connected_gene': 'MEGF9', 'score': 0.21}]
chr9	GH09I120681	120681526	120683049	0.31	[{'connected_gene': 'CUTALP', 'score': 5.62}, {'connected_gene': 'MEGF9', 'score': 0.29}, {'connected_gene': 'PIR45570', 'score': 0.22}]
chr9	GH09I120708	120708763	120708912	0.51	[{'connected_gene': 'CUTALP', 'score': 4.38}, {'connected_gene': 'MEGF9', 'score': 0.44}, {'connected_gene': 'PIR45570', 'score': 0.17}]
chr9	GH09I120697	120697211	120699606	0.57	[{'connected_gene': 'CUTALP', 'score': 25.46}, {'connected_gene': 'MEGF9', 'score': 5.13}, {'connected_gene': 'PIR45570', 'score': 0.18}]
chr9	GH09I121026	121026623	121026772	0.67	[{'connected_gene': 'MEGF9', 'score': 10.14}, {'connected_gene': 'C5', 'score': 0.25}, {'connected_gene': 'CNTRL', 'score': 0.25}, {'connected_gene': 'TRAF1', 'score': 0.15}]
chr9	GH09I120783	120783401	120784392	1.24	[{'connected_gene': 'MEGF9', 'score': 12.5}, {'connected_gene': 'TRAF1', 'score': 7.52}, {'connected_gene': 'FBXW2', 'score': 2.27}, {'connected_gene': 'PIR59216', 'score': 0.44}, {'connected_gene': 'AHCYP2', 'score': 0.21}]
chr9	GH09I120630	120630881	120631070	0.43	[{'connected_gene': 'MEGF9', 'score': 13.33}, {'connected_gene': 'CDK5RAP2', 'score': 11.17}, {'connected_gene': 'TRAF1', 'score': 1.45}, {'connected_gene': 'PIR45570', 'score': 0.44}]
chr9	GH09I120639	120639601	120640594	0.69	[{'connected_gene': 'MEGF9', 'score': 11.25}, {'connected_gene': 'CDK5RAP2', 'score': 10.41}, {'connected_gene': 'CUTALP', 'score': 4.38}, {'connected_gene': 'PIR45570', 'score': 0.37}]
chr9	GH09I120628	120628215	120629656	0.62	[{'connected_gene': 'MEGF9', 'score': 12.16}, {'connected_gene': 'CDK5RAP2', 'score': 11.18}, {'connected_gene': 'CUTALP', 'score': 6.67}, {'connected_gene': 'PIR45570', 'score': 0.44}]
chr9	GH09I120619	120619843	120620032	0.86	[{'connected_gene': 'MEGF9', 'score': 12.05}, {'connected_gene': 'CDK5RAP2', 'score': 10.57}, {'connected_gene': 'CUTALP', 'score': 4.57}, {'connected_gene': 'PIR45570', 'score': 0.77}]
chr9	GH09I120652	120652664	120656427	0.64	[{'connected_gene': 'MEGF9', 'score': 11.47}, {'connected_gene': 'CDK5RAP2', 'score': 10.41}, {'connected_gene': 'CUTALP', 'score': 5.8}, {'connected_gene': 'PIR45570', 'score': 0.29}]
chr9	GH09I120657	120657001	120658196	0.38	[{'connected_gene': 'MEGF9', 'score': 11.47}, {'connected_gene': 'CDK5RAP2', 'score': 9.99}, {'connected_gene': 'CUTALP', 'score': 4.42}, {'connected_gene': 'PIR45570', 'score': 0.29}]
chr9	GH09I120616	120616712	120618848	0.69	[{'connected_gene': 'MEGF9', 'score': 12.04}, {'connected_gene': 'CDK5RAP2', 'score': 11.08}, {'connected_gene': 'CUTALP', 'score': 4.98}, {'connected_gene': 'PIR45570', 'score': 0.77}]
chr9	GH09I120757	120757001	120757600	0.43	[{'connected_gene': 'MEGF9', 'score': 11.71}, {'connected_gene': 'AHCYP2', 'score': 0.28}, {'connected_gene': 'FBXW2', 'score': 0.28}, {'connected_gene': 'PIR59216', 'score': 0.28}]
chr9	GH09I120474	120474402	120476179	0.92	[{'connected_gene': 'MEGF9', 'score': 13.98}, {'connected_gene': 'FBXW2', 'score': 2.5}, {'connected_gene': 'PIR42824', 'score': 0.31}, {'connected_gene': 'GC09P120416', 'score': 0.22}, {'connected_gene': 'CDK5RAP2', 'score': 0.15}]
chr9	GH09I120778	120778376	120779512	0.89	[{'connected_gene': 'MEGF9', 'score': 11.87}, {'connected_gene': 'FBXW2', 'score': 0.39}, {'connected_gene': 'PIR59216', 'score': 0.39}, {'connected_gene': 'AHCYP2', 'score': 0.22}]
chr9	GH09I120709	120709422	120716358	2.45	[{'connected_gene': 'MEGF9', 'score': 555.45}, {'connected_gene': 'CUTALP', 'score': 37.75}, {'connected_gene': 'CNTRL', 'score': 26.32}, {'connected_gene': 'PSMD5', 'score': 16.39}, {'connected_gene': 'FBXW2', 'score': 15.75}, {'connected_gene': 'PIR45570', 'score': 0.16}]
chr9	GH09I120692	120692447	120694703	1.04	[{'connected_gene': 'MEGF9', 'score': 5.1}, {'connected_gene': 'CUTALP', 'score': 4.37}, {'connected_gene': 'PIR45570', 'score': 0.19}]
chr9	GH09I120680	120680351	120681161	0.38	[{'connected_gene': 'MEGF9', 'score': 5.06}, {'connected_gene': 'PIR45570', 'score': 0.22}]
chr9	GH09I120689	120689463	120690477	0.82	[{'connected_gene': 'MEGF9', 'score': 0.34}, {'connected_gene': 'PIR45570', 'score': 0.2}]
chr9	GH09I120696	120696960	120697072	0.74	[{'connected_gene': 'MEGF9', 'score': 0.37}, {'connected_gene': 'PIR45570', 'score': 0.19}]
chr9	GH09I120583	120583243	120585058	1.26	[{'connected_gene': 'GGTA1P', 'score': 4.65}, {'connected_gene': 'MEGF9', 'score': 4.53}, {'connected_gene': 'CUTALP', 'score': 4.14}, {'connected_gene': 'TRAF1', 'score': 1.91}, {'connected_gene': 'CDK5RAP2', 'score': 0.77}, {'connected_gene': 'PIR45570', 'score': 0.28}]
chr9	GH09I120622	120622698	120624403	0.54	[{'connected_gene': 'PIR45570', 'score': 550.77}, {'connected_gene': 'MEGF9', 'score': 11.35}, {'connected_gene': 'CDK5RAP2', 'score': 10.76}]
chr9	GH09I120621	120621438	120622685	0.49	[{'connected_gene': 'PIR45570', 'score': 550.77}, {'connected_gene': 'MEGF9', 'score': 15.66}, {'connected_gene': 'CUTALP', 'score': 11.7}, {'connected_gene': 'CDK5RAP2', 'score': 10.56}]
chr9	GH09I121611	121611993	121613707	1.28	[{'connected_gene': 'ENSG00000229854', 'score': 12.27}, {'connected_gene': 'DAB2IP', 'score': 11.93}, {'connected_gene': 'MEGF9', 'score': 4.59}, {'connected_gene': 'LOC105376257', 'score': 0.13}]