PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000358157	[[91606361, 91606610], [91615968, 91619925]]	[[91616115, 91617252]]
ENST00000375846	[[91611420, 91619925]]	[[91616115, 91617252]]
NM_005226	[[91606323, 91606610], [91615968, 91620070]]	[[91616115, 91617252]]

Promoter

Chrom	Start	End	Description
chr9	91606355	91606398	CAGE_peak_1_at_S1PR3_5end
chr9	91616472	91616491	CAGE_peak_3_at_S1PR3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I088948	88948918	88951979	1.42	[{'connected_gene': 'C9orf47', 'score': 5.51}, {'connected_gene': 'S1PR3', 'score': 4.68}, {'connected_gene': 'PCNPP2', 'score': 0.34}, {'connected_gene': 'PIR55815', 'score': 0.25}]
chr9	GH09I088923	88923095	88924630	1.17	[{'connected_gene': 'S1PR3', 'score': 2.91}, {'connected_gene': 'C9orf47', 'score': 2.31}, {'connected_gene': 'SECISBP2', 'score': 1.29}, {'connected_gene': 'PIR55815', 'score': 0.37}, {'connected_gene': 'PCNPP2', 'score': 0.25}]
chr9	GH09I088926	88926961	88927963	1.21	[{'connected_gene': 'S1PR3', 'score': 2.5}, {'connected_gene': 'C9orf47', 'score': 1.9}, {'connected_gene': 'SECISBP2', 'score': 1.28}, {'connected_gene': 'PIR55815', 'score': 0.34}, {'connected_gene': 'PCNPP2', 'score': 0.26}]
chr9	GH09I088925	88925537	88925915	0.46	[{'connected_gene': 'S1PR3', 'score': 2.28}, {'connected_gene': 'C9orf47', 'score': 1.51}, {'connected_gene': 'PIR55815', 'score': 0.34}, {'connected_gene': 'PCNPP2', 'score': 0.25}]
chr9	GH09I088935	88935205	88937676	0.79	[{'connected_gene': 'S1PR3', 'score': 2.66}, {'connected_gene': 'C9orf47', 'score': 1.92}, {'connected_gene': 'PIR55815', 'score': 0.29}, {'connected_gene': 'PCNPP2', 'score': 0.29}]
chr9	GH09I088941	88941197	88943398	0.7	[{'connected_gene': 'S1PR3', 'score': 6.22}, {'connected_gene': 'C9orf47', 'score': 5.29}, {'connected_gene': 'PCNPP2', 'score': 0.31}, {'connected_gene': 'PIR55815', 'score': 0.28}]
chr9	GH09I088988	88988826	88992601	1.89	[{'connected_gene': 'S1PR3', 'score': 555.19}, {'connected_gene': 'C9orf47', 'score': 550.77}, {'connected_gene': 'ENSG00000228658', 'score': 0.37}]
chr9	GH09I088993	88993775	88995607	0.31	[{'connected_gene': 'S1PR3', 'score': 0.77}, {'connected_gene': 'C9orf47', 'score': 0.77}, {'connected_gene': 'GC09M089006', 'score': 0.37}]
chr9	GH09I088952	88952906	88954526	0.83	[{'connected_gene': 'S1PR3', 'score': 6.2}, {'connected_gene': 'PCNPP2', 'score': 0.37}, {'connected_gene': 'PIR55815', 'score': 0.25}]
chr9	GH09I088998	88998430	88999675	0.72	[{'connected_gene': 'S1PR3', 'score': 0.44}, {'connected_gene': 'GC09M089006', 'score': 0.39}]
chr9	GH09I089000	89000212	89001715	0.92	[{'connected_gene': 'S1PR3', 'score': 0.44}, {'connected_gene': 'GC09M089006', 'score': 0.44}]
chr9	GH09I089417	89417490	89430409	1.6	[{'connected_gene': 'SEMA4D', 'score': 24.03}, {'connected_gene': 'CKS2', 'score': 6.08}, {'connected_gene': 'SECISBP2', 'score': 4.48}, {'connected_gene': 'S1PR3', 'score': 1.5}, {'connected_gene': 'C9orf47', 'score': 1.3}, {'connected_gene': 'PA2G4P6', 'score': 0.31}, {'connected_gene': 'PIR43063', 'score': 0.2}]
chr9	GH09I088744	88744593	88749938	1.32	[{'connected_gene': 'MIR4289', 'score': 550.77}, {'connected_gene': 'S1PR3', 'score': 4.77}, {'connected_gene': 'GC09M088841', 'score': 0.16}]