Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000374431 [[113635542, 113638002], [113703700, 113704448], [113734352, 113734500], [113735760, 113735838], [113800120, 113800323]] [[113637700, 113638002], [113703700, 113704448], [113734352, 113734397]]
ENST00000541779 [[113635543, 113638002], [113703700, 113704448], [113761672, 113761720]] [[113637700, 113638002], [113703700, 113704448], [113761672, 113761720]]
ENST00000374430 [[113636057, 113638002], [113703700, 113704448], [113734352, 113734500], [113735760, 113735838], [113761672, 113761746]] [[113637700, 113638002], [113703700, 113704448], [113734352, 113734397]]
ENST00000358883 [[113636456, 113638002], [113703700, 113704448], [113734352, 113734500], [113800120, 113800365]] [[113637700, 113638002], [113703700, 113704448], [113734352, 113734397]]
ENST00000538760 [[113637455, 113638002], [113703700, 113704448], [113800931, 113800981]] [[113637700, 113638002], [113703700, 113704448], [113800931, 113800979]]
ENST00000441240 [[113703947, 113704448], [113734352, 113734500], [113735760, 113735838], [113800446, 113800738]] [[113703947, 113704448], [113734352, 113734397]]
NM_057159 [[113636053, 113638002], [113703700, 113704448], [113734352, 113734500], [113735760, 113735838], [113800120, 113800365]] [[113637700, 113638002], [113703700, 113704448], [113734352, 113734397]]
NM_001401 [[113636053, 113638002], [113703700, 113704448], [113734352, 113734500], [113800120, 113800365]] [[113637700, 113638002], [113703700, 113704448], [113734352, 113734397]]
Promoter
Chrom Start End Description
chr9 113735810 113735838 CAGE_peak_16_at_LPAR1_5end
chr9 113761738 113761756 CAGE_peak_7_at_LPAR1_5end
chr9 113761760 113761772 CAGE_peak_24_at_LPAR1_5end
chr9 113761806 113761818 CAGE_peak_27_at_LPAR1_5end
chr9 113798435 113798442 CAGE_peak_42_at_LPAR1_5end
chr9 113798489 113798512 CAGE_peak_15_at_LPAR1_5end
chr9 113798560 113798572 CAGE_peak_34_at_LPAR1_5end
chr9 113798650 113798657 CAGE_peak_22_at_LPAR1_5end
chr9 113800190 113800201 CAGE_peak_20_at_LPAR1_5end
chr9 113800238 113800253 CAGE_peak_11_at_LPAR1_5end
chr9 113800254 113800257 CAGE_peak_31_at_LPAR1_5end
chr9 113800288 113800301 CAGE_peak_10_at_LPAR1_5end
chr9 113800317 113800328 CAGE_peak_18_at_LPAR1_5end
chr9 113800341 113800373 CAGE_peak_4_at_LPAR1_5end
chr9 113800377 113800400 CAGE_peak_6_at_LPAR1_5end
chr9 113800467 113800520 CAGE_peak_2_at_LPAR1_5end
chr9 113800688 113800699 CAGE_peak_19_at_LPAR1_5end
chr9 113800705 113800781 CAGE_peak_1_at_LPAR1_5end
chr9 113800785 113800796 CAGE_peak_14_at_LPAR1_5end
chr9 113800817 113800828 CAGE_peak_17_at_LPAR1_5end
chr9 113800847 113800856 CAGE_peak_21_at_LPAR1_5end
chr9 113800994 113801032 CAGE_peak_3_at_LPAR1_5end
chr9 113801048 113801064 CAGE_peak_8_at_LPAR1_5end
chr9 113801199 113801255 CAGE_peak_5_at_LPAR1_5end
chr9 113801265 113801284 CAGE_peak_9_at_LPAR1_5end
chr9 113801375 113801388 CAGE_peak_25_at_LPAR1_5end
chr9 113801395 113801417 CAGE_peak_26_at_LPAR1_5end
chr9 113801475 113801496 CAGE_peak_23_at_LPAR1_5end
chr9 113801505 113801517 CAGE_peak_36_at_LPAR1_5end
chr9 113801520 113801531 CAGE_peak_35_at_LPAR1_5end
chr9 113801625 113801636 CAGE_peak_29_at_LPAR1_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr9 GH09I110647 110647061 110653135 1.03 [{'connected_gene': 'MUSK', 'score': 6.11}, {'connected_gene': 'LPAR1', 'score': 4.07}, {'connected_gene': 'LOC105376218', 'score': 0.29}]
chr9 GH09I111235 111235503 111237199 0.2 [{'connected_gene': 'OR2K2', 'score': 9.6}, {'connected_gene': 'LPAR1', 'score': 6.06}, {'connected_gene': 'ZNF483', 'score': 4.91}, {'connected_gene': 'MIR7702', 'score': 0.29}, {'connected_gene': 'ENSG00000227531', 'score': 0.25}, {'connected_gene': 'LOC105376219', 'score': 0.25}, {'connected_gene': 'RNY4P18', 'score': 0.12}, {'connected_gene': 'GC09M111098', 'score': 0.12}]
chr9 GH09I111232 111232961 111234594 0.43 [{'connected_gene': 'PTGR1', 'score': 7.28}, {'connected_gene': 'LPAR1', 'score': 6.62}, {'connected_gene': 'ZNF483', 'score': 4.72}, {'connected_gene': 'GNG10', 'score': 4.61}, {'connected_gene': 'MIR7702', 'score': 0.28}, {'connected_gene': 'LOC105376219', 'score': 0.23}, {'connected_gene': 'ENSG00000227531', 'score': 0.23}, {'connected_gene': 'RNY4P18', 'score': 0.12}, {'connected_gene': 'GC09M111098', 'score': 0.12}]
chr9 GH09I111033 111033422 111039897 2.27 [{'connected_gene': 'LPAR1', 'score': 555.81}, {'connected_gene': 'SVEP1', 'score': 12.25}, {'connected_gene': 'PTGR1', 'score': 4.33}, {'connected_gene': 'ENSG00000207401', 'score': 0.15}]
chr9 GH09I110990 110990307 110991548 0.65 [{'connected_gene': 'LPAR1', 'score': 10.71}, {'connected_gene': 'DNAJC25', 'score': 6.12}, {'connected_gene': 'ENSG00000207401', 'score': 0.22}]
chr9 GH09I110640 110640365 110642341 0.38 [{'connected_gene': 'LPAR1', 'score': 10.18}, {'connected_gene': 'MUSK', 'score': 6.96}, {'connected_gene': 'LOC105376218', 'score': 0.34}]
chr9 GH09I111103 111103429 111103734 0.2 [{'connected_gene': 'LPAR1', 'score': 17.42}, {'connected_gene': 'MUSK', 'score': 10.44}, {'connected_gene': 'RNY4P18', 'score': 0.44}, {'connected_gene': 'GC09M111098', 'score': 0.44}, {'connected_gene': 'MIR7702', 'score': 0.1}]
chr9 GH09I111104 111103241 111103390 0.2 [{'connected_gene': 'LPAR1', 'score': 11.11}, {'connected_gene': 'MUSK', 'score': 10.44}, {'connected_gene': 'RNY4P18', 'score': 0.44}, {'connected_gene': 'GC09M111098', 'score': 0.44}, {'connected_gene': 'MIR7702', 'score': 0.1}]
chr9 GH09I110911 110911064 110913730 0.94 [{'connected_gene': 'LPAR1', 'score': 8.63}, {'connected_gene': 'C9orf152', 'score': 4.82}, {'connected_gene': 'RNU6-432P', 'score': 0.44}, {'connected_gene': 'GC09P110935', 'score': 0.34}]
chr9 GH09I110894 110894731 110896201 0.2 [{'connected_gene': 'LPAR1', 'score': 18.98}, {'connected_gene': 'C9orf152', 'score': 4.31}, {'connected_gene': 'GC09P110904', 'score': 0.44}, {'connected_gene': 'GC09P110867', 'score': 0.31}]
chr9 GH09I110897 110897760 110900564 0.4 [{'connected_gene': 'LPAR1', 'score': 18.51}, {'connected_gene': 'C9orf152', 'score': 4.41}, {'connected_gene': 'GC09P110904', 'score': 0.77}, {'connected_gene': 'GC09P110867', 'score': 0.29}]
chr9 GH09I111286 111286852 111287890 0.2 [{'connected_gene': 'LPAR1', 'score': 10.45}, {'connected_gene': 'OR2K2', 'score': 10.3}, {'connected_gene': 'ENSG00000227531', 'score': 6.82}, {'connected_gene': 'LOC105376219', 'score': 0.77}]
chr9 GH09I110883 110883568 110883619 0.22 [{'connected_gene': 'LPAR1', 'score': 10.2}, {'connected_gene': 'OR2K2', 'score': 8.18}, {'connected_gene': 'GC09P110867', 'score': 0.37}, {'connected_gene': 'GC09P110904', 'score': 0.37}]
chr9 GH09I110891 110891768 110893057 0.8 [{'connected_gene': 'LPAR1', 'score': 10.5}, {'connected_gene': 'PTGR1', 'score': 5.87}, {'connected_gene': 'C9orf152', 'score': 5.64}, {'connected_gene': 'GC09P110904', 'score': 0.39}, {'connected_gene': 'GC09P110867', 'score': 0.34}]
chr9 GH09I111298 111298063 111300030 0.91 [{'connected_gene': 'LPAR1', 'score': 11.22}, {'connected_gene': 'PTGR1', 'score': 4.86}, {'connected_gene': 'LOC105376219', 'score': 0.39}, {'connected_gene': 'OR2K2', 'score': 0.29}]
chr9 GH09I111254 111254000 111254401 0.31 [{'connected_gene': 'LPAR1', 'score': 4.88}, {'connected_gene': 'PTGR1', 'score': 4.58}, {'connected_gene': 'MIR7702', 'score': 0.37}, {'connected_gene': 'LOC105376219', 'score': 0.29}, {'connected_gene': 'ENSG00000227531', 'score': 0.29}, {'connected_gene': 'RNY4P18', 'score': 0.1}, {'connected_gene': 'GC09M111098', 'score': 0.1}]
chr9 GH09I111117 111117494 111119290 0.31 [{'connected_gene': 'LPAR1', 'score': 17.07}, {'connected_gene': 'PTGR1', 'score': 7.2}, {'connected_gene': 'RNY4P18', 'score': 0.34}, {'connected_gene': 'GC09M111098', 'score': 0.34}, {'connected_gene': 'MIR7702', 'score': 0.1}]
chr9 GH09I111065 111065746 111069467 1.05 [{'connected_gene': 'LPAR1', 'score': 11.82}, {'connected_gene': 'ZNF483', 'score': 5.1}, {'connected_gene': 'RNY4P18', 'score': 0.31}, {'connected_gene': 'GC09M111098', 'score': 0.31}]
chr9 GH09I110976 110976964 110978170 0.94 [{'connected_gene': 'LPAR1', 'score': 10.94}, {'connected_gene': 'RNU6-432P', 'score': 10.5}, {'connected_gene': 'PTGR1', 'score': 7.17}, {'connected_gene': 'ENSG00000207401', 'score': 0.26}]
chr9 GH09I111148 111148150 111149784 0.86 [{'connected_gene': 'LPAR1', 'score': 22.05}, {'connected_gene': 'RNU6-432P', 'score': 10.51}, {'connected_gene': 'RNY4P18', 'score': 0.23}, {'connected_gene': 'GC09M111098', 'score': 0.23}, {'connected_gene': 'MIR7702', 'score': 0.13}, {'connected_gene': 'LOC105376219', 'score': 0.12}, {'connected_gene': 'ENSG00000227531', 'score': 0.12}]
chr9 GH09I110917 110917310 110922325 1.31 [{'connected_gene': 'LPAR1', 'score': 4.25}, {'connected_gene': 'GC09P110935', 'score': 0.39}, {'connected_gene': 'RNU6-432P', 'score': 0.37}]
chr9 GH09I110916 110916037 110917103 0.31 [{'connected_gene': 'LPAR1', 'score': 6.72}, {'connected_gene': 'RNU6-432P', 'score': 0.39}, {'connected_gene': 'GC09P110935', 'score': 0.37}]
chr9 GH09I110994 110994140 110998194 1.02 [{'connected_gene': 'LPAR1', 'score': 10.87}, {'connected_gene': 'RNU6-432P', 'score': 10.78}, {'connected_gene': 'ENSG00000207401', 'score': 0.21}]
chr9 GH09I111276 111276801 111277200 0.31 [{'connected_gene': 'LPAR1', 'score': 10.28}, {'connected_gene': 'LOC105376219', 'score': 0.44}, {'connected_gene': 'ENSG00000227531', 'score': 0.44}, {'connected_gene': 'MIR7702', 'score': 0.44}]
chr9 GH09I111195 111195295 111196790 0.2 [{'connected_gene': 'LPAR1', 'score': 22.52}, {'connected_gene': 'MIR7702', 'score': 0.18}, {'connected_gene': 'LOC105376219', 'score': 0.17}, {'connected_gene': 'ENSG00000227531', 'score': 0.17}, {'connected_gene': 'RNY4P18', 'score': 0.15}, {'connected_gene': 'GC09M111098', 'score': 0.15}]
chr9 GH09I111160 111160581 111165765 1.06 [{'connected_gene': 'LPAR1', 'score': 23.7}, {'connected_gene': 'RNY4P18', 'score': 0.2}, {'connected_gene': 'GC09M111098', 'score': 0.2}, {'connected_gene': 'MIR7702', 'score': 0.14}, {'connected_gene': 'LOC105376219', 'score': 0.13}, {'connected_gene': 'ENSG00000227531', 'score': 0.13}]
chr9 GH09I111178 111178216 111179013 0.86 [{'connected_gene': 'LPAR1', 'score': 10.98}, {'connected_gene': 'RNY4P18', 'score': 0.18}, {'connected_gene': 'GC09M111098', 'score': 0.18}, {'connected_gene': 'MIR7702', 'score': 0.16}, {'connected_gene': 'LOC105376219', 'score': 0.14}, {'connected_gene': 'ENSG00000227531', 'score': 0.14}]
chr9 GH09I111158 111158441 111158670 0.38 [{'connected_gene': 'LPAR1', 'score': 10.57}, {'connected_gene': 'RNY4P18', 'score': 0.21}, {'connected_gene': 'GC09M111098', 'score': 0.21}, {'connected_gene': 'MIR7702', 'score': 0.14}, {'connected_gene': 'LOC105376219', 'score': 0.13}, {'connected_gene': 'ENSG00000227531', 'score': 0.13}]
chr9 GH09I111109 111109000 111109210 0.58 [{'connected_gene': 'LPAR1', 'score': 10.53}, {'connected_gene': 'RNY4P18', 'score': 0.39}, {'connected_gene': 'GC09M111098', 'score': 0.39}, {'connected_gene': 'MIR7702', 'score': 0.1}]
chr9 GH09I111099 111099066 111100150 0.91 [{'connected_gene': 'LPAR1', 'score': 17.01}, {'connected_gene': 'RNY4P18', 'score': 0.77}, {'connected_gene': 'GC09M111098', 'score': 0.77}, {'connected_gene': 'MIR7702', 'score': 0.09}]
chr9 GH09I111056 111056337 111057576 0.2 [{'connected_gene': 'LPAR1', 'score': 0.37}, {'connected_gene': 'RNY4P18', 'score': 0.26}, {'connected_gene': 'GC09M111098', 'score': 0.26}]
chr9 GH09I111094 111094120 111095640 0.83 [{'connected_gene': 'LPAR1', 'score': 11.51}, {'connected_gene': 'RNY4P18', 'score': 0.77}, {'connected_gene': 'GC09M111098', 'score': 0.77}]
chr9 GH09I111064 111064213 111064638 0.65 [{'connected_gene': 'LPAR1', 'score': 11.5}, {'connected_gene': 'RNY4P18', 'score': 0.29}, {'connected_gene': 'GC09M111098', 'score': 0.29}]
chr9 GH09I111078 111078400 111078801 1.13 [{'connected_gene': 'LPAR1', 'score': 12.01}, {'connected_gene': 'ECPAS', 'score': 2.34}, {'connected_gene': 'RNY4P18', 'score': 0.37}, {'connected_gene': 'GC09M111098', 'score': 0.37}]
chr9 GH09I111076 111076093 111077063 0.31 [{'connected_gene': 'LPAR1', 'score': 12.01}, {'connected_gene': 'RNY4P18', 'score': 0.34}, {'connected_gene': 'GC09M111098', 'score': 0.34}]
chr9 GH09I111052 111052493 111053587 0.2 [{'connected_gene': 'LPAR1', 'score': 0.39}, {'connected_gene': 'RNY4P18', 'score': 0.26}, {'connected_gene': 'GC09M111098', 'score': 0.26}]
chr9 GH09I110834 110834990 110836925 0.46 [{'connected_gene': 'LPAR1', 'score': 5.32}, {'connected_gene': 'GC09P110867', 'score': 0.29}, {'connected_gene': 'RPS21P5', 'score': 0.14}]
chr9 GH09I110808 110808657 110808995 0.99 [{'connected_gene': 'LPAR1', 'score': 10.78}, {'connected_gene': 'GC09P110867', 'score': 0.22}, {'connected_gene': 'RPS21P5', 'score': 0.18}]
chr9 GH09I110887 110887081 110887230 0.63 [{'connected_gene': 'LPAR1', 'score': 10.29}, {'connected_gene': 'GC09P110867', 'score': 0.37}, {'connected_gene': 'GC09P110904', 'score': 0.37}]
chr9 GH09I111004 111004729 111007184 0.4 [{'connected_gene': 'LPAR1', 'score': 11.28}, {'connected_gene': 'ENSG00000207401', 'score': 0.19}]
chr9 GH09I111016 111016781 111016970 0.66 [{'connected_gene': 'LPAR1', 'score': 11.94}, {'connected_gene': 'ENSG00000207401', 'score': 0.18}]
chr9 GH09I110985 110985041 110985190 0.4 [{'connected_gene': 'LPAR1', 'score': 10.79}, {'connected_gene': 'ENSG00000207401', 'score': 0.23}]
chr9 GH09I110969 110969447 110972423 0.79 [{'connected_gene': 'LPAR1', 'score': 10.71}, {'connected_gene': 'ENSG00000207401', 'score': 0.28}]
chr9 GH09I110992 110992047 110992954 0.2 [{'connected_gene': 'LPAR1', 'score': 0.25}, {'connected_gene': 'ENSG00000207401', 'score': 0.22}]
chr9 GH09I111010 111010831 111014959 0.69 [{'connected_gene': 'LPAR1', 'score': 11.92}, {'connected_gene': 'ENSG00000207401', 'score': 0.18}]
chr9 GH09I110999 110999456 110999515 0.7 [{'connected_gene': 'LPAR1', 'score': 550.28}, {'connected_gene': 'ENSG00000207401', 'score': 0.2}]
chr9 GH09I111021 111021676 111021982 0.22 [{'connected_gene': 'LPAR1', 'score': 0.37}, {'connected_gene': 'ENSG00000207401', 'score': 0.17}]
chr9 GH09I110973 110973851 110976376 0.46 [{'connected_gene': 'LPAR1', 'score': 10.57}, {'connected_gene': 'ENSG00000207401', 'score': 0.26}]
chr9 GH09I111028 111028666 111031509 0.52 [{'connected_gene': 'LPAR1', 'score': 0.44}, {'connected_gene': 'ENSG00000207401', 'score': 0.15}]
chr9 GH09I110935 110935501 110938197 0.63 [{'connected_gene': 'RNU6-432P', 'score': 11.41}, {'connected_gene': 'LPAR1', 'score': 10.51}, {'connected_gene': 'MUSK', 'score': 10.05}, {'connected_gene': 'ENSG00000207401', 'score': 0.77}]
chr9 GH09I110879 110879533 110881887 0.78 [{'connected_gene': 'RNU6-432P', 'score': 11.4}, {'connected_gene': 'LPAR1', 'score': 11.14}, {'connected_gene': 'GC09P110867', 'score': 0.39}, {'connected_gene': 'GC09P110904', 'score': 0.34}]
chr9 GH09I110979 110979094 110981066 0.2 [{'connected_gene': 'RNU6-432P', 'score': 11.0}, {'connected_gene': 'LPAR1', 'score': 10.68}, {'connected_gene': 'ENSG00000207401', 'score': 0.25}]
chr9 GH09I110938 110938550 110939787 0.63 [{'connected_gene': 'RNU6-432P', 'score': 11.39}, {'connected_gene': 'LPAR1', 'score': 10.51}, {'connected_gene': 'ENSG00000207401', 'score': 0.77}]
chr9 GH09I110900 110900758 110902762 0.69 [{'connected_gene': 'RNU6-432P', 'score': 550.77}, {'connected_gene': 'GC09P110904', 'score': 550.77}, {'connected_gene': 'GC09P110867', 'score': 0.29}, {'connected_gene': 'LPAR1', 'score': 0.12}]
chr9 GH09I110926 110926248 110927548 0.38 [{'connected_gene': 'RNU6-432P', 'score': 11.93}, {'connected_gene': 'LPAR1', 'score': 9.92}, {'connected_gene': 'GC09P110935', 'score': 0.44}]
chr9 GH09I110946 110946916 110948244 0.31 [{'connected_gene': 'ENSG00000207401', 'score': 0.39}, {'connected_gene': 'LPAR1', 'score': 0.16}]
chr9 GH09I110875 110875401 110875590 0.64 [{'connected_gene': 'GC09P110867', 'score': 0.44}, {'connected_gene': 'GC09P110904', 'score': 0.31}, {'connected_gene': 'LPAR1', 'score': 0.1}]
chr9 GH09I110948 110948453 110953728 0.54 [{'connected_gene': 'ENSG00000207401', 'score': 0.37}, {'connected_gene': 'LPAR1', 'score': 0.17}]
chr9 GH09I110961 110961692 110963365 0.2 [{'connected_gene': 'ENSG00000207401', 'score': 0.31}, {'connected_gene': 'LPAR1', 'score': 0.18}]
chr9 GH09I110942 110942621 110942790 0.4 [{'connected_gene': 'ENSG00000207401', 'score': 0.44}, {'connected_gene': 'LPAR1', 'score': 0.15}]
chr9 GH09I110928 110928233 110930137 0.31 [{'connected_gene': 'GC09P110935', 'score': 0.44}, {'connected_gene': 'RNU6-432P', 'score': 0.31}, {'connected_gene': 'LPAR1', 'score': 0.14}]
chr9 GH09I110932 110932280 110934263 1 [{'connected_gene': 'GC09P110935', 'score': 550.77}, {'connected_gene': 'ENSG00000207401', 'score': 550.77}, {'connected_gene': 'RNU6-432P', 'score': 0.31}, {'connected_gene': 'LPAR1', 'score': 0.14}]

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