PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000290953	[[67516473, 67516721], [67516927, 67517013], [67517171, 67517304], [67517419, 67517716]]	[[67516538, 67516721], [67516927, 67517013], [67517171, 67517301]]
NM_001138	[[67516473, 67516721], [67516927, 67517013], [67517171, 67517304], [67517419, 67517716]]	[[67516538, 67516721], [67516927, 67517013], [67517171, 67517301]]

Promoter

Chrom	Start	End	Description
chr16	67517444	67517455	CAGE_peak_1_at_AGRP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I067486	67486422	67492635	1.3	[{'connected_gene': 'ATP6V0D1', 'score': 19.97}, {'connected_gene': 'RIPOR1', 'score': 12.13}, {'connected_gene': 'LRRC36', 'score': 11.73}, {'connected_gene': 'DUS2', 'score': 11.07}, {'connected_gene': 'CARMIL2', 'score': 10.98}, {'connected_gene': 'ZDHHC1', 'score': 10.81}, {'connected_gene': 'HSD11B2', 'score': 10.57}, {'connected_gene': 'ENSG00000237718', 'score': 10.43}, {'connected_gene': 'PARD6A', 'score': 10.38}, {'connected_gene': 'ACD', 'score': 10.38}, {'connected_gene': 'PRMT7', 'score': 5.42}, {'connected_gene': 'LOC101927837', 'score': 0.44}, {'connected_gene': 'AGRP', 'score': 0.44}, {'connected_gene': 'GC16M067502', 'score': 0.39}]
chr16	GH16I067506	67506438	67508104	1.05	[{'connected_gene': 'ATP6V0D1', 'score': 15.56}, {'connected_gene': 'LRRC36', 'score': 12.52}, {'connected_gene': 'AGRP', 'score': 11.61}, {'connected_gene': 'PARD6A', 'score': 10.79}, {'connected_gene': 'ACD', 'score': 10.79}, {'connected_gene': 'CARMIL2', 'score': 10.7}, {'connected_gene': 'HSD11B2', 'score': 10.59}, {'connected_gene': 'ENSG00000237718', 'score': 10.46}, {'connected_gene': 'ZDHHC1', 'score': 10.17}, {'connected_gene': 'DPEP2', 'score': 8.01}, {'connected_gene': 'GC16M067502', 'score': 0.77}, {'connected_gene': 'RIPOR1', 'score': 0.39}]
chr16	GH16I067479	67479572	67484532	2.56	[{'connected_gene': 'ATP6V0D1', 'score': 577.25}, {'connected_gene': 'LOC101927837', 'score': 550.77}, {'connected_gene': 'AGRP', 'score': 550.77}, {'connected_gene': 'ZDHHC1', 'score': 38.46}, {'connected_gene': 'ENKD1', 'score': 31.93}, {'connected_gene': 'NAE1', 'score': 28.3}, {'connected_gene': 'EDC4', 'score': 24.27}, {'connected_gene': 'CENPT', 'score': 23.87}, {'connected_gene': 'CTCF', 'score': 21.56}, {'connected_gene': 'SLC7A6OS', 'score': 18.46}, {'connected_gene': 'E2F4', 'score': 17.02}, {'connected_gene': 'ENSG00000260465', 'score': 15.27}, {'connected_gene': 'RIPOR1', 'score': 13.75}, {'connected_gene': 'ENSG00000263276', 'score': 11.83}, {'connected_gene': 'ACD', 'score': 11.51}, {'connected_gene': 'CARMIL2', 'score': 10.97}, {'connected_gene': 'PLEKHG4', 'score': 10.97}, {'connected_gene': 'C16orf86', 'score': 10.79}, {'connected_gene': 'HSD11B2', 'score': 10.47}, {'connected_gene': 'PARD6A', 'score': 10.38}, {'connected_gene': 'ENSG00000260891', 'score': 10.2}, {'connected_gene': 'FBXL8', 'score': 9.91}, {'connected_gene': 'LCAT', 'score': 9.81}, {'connected_gene': 'LRRC36', 'score': 9.58}, {'connected_gene': 'RANBP10', 'score': 9.23}, {'connected_gene': 'PSMB10', 'score': 4.4}, {'connected_gene': 'C16orf70', 'score': 3.57}, {'connected_gene': 'LRRC29', 'score': 1.57}]
chr16	GH16I067494	67494098	67494247	0.69	[{'connected_gene': 'RIPOR1', 'score': 12.16}, {'connected_gene': 'CARMIL2', 'score': 10.7}, {'connected_gene': 'HSD11B2', 'score': 10.56}, {'connected_gene': 'ENSG00000237718', 'score': 10.43}, {'connected_gene': 'PARD6A', 'score': 10.32}, {'connected_gene': 'ACD', 'score': 10.32}, {'connected_gene': 'ZDHHC1', 'score': 9.88}, {'connected_gene': 'GC16M067502', 'score': 0.44}, {'connected_gene': 'LOC101927837', 'score': 0.39}, {'connected_gene': 'AGRP', 'score': 0.39}]
chr16	GH16I067444	67444650	67453164	1.07	[{'connected_gene': 'GC16M067447', 'score': 550.77}, {'connected_gene': 'ATP6V0D1', 'score': 32.08}, {'connected_gene': 'ZDHHC1', 'score': 11.67}, {'connected_gene': 'AGRP', 'score': 11.24}, {'connected_gene': 'RIPOR1', 'score': 10.41}, {'connected_gene': 'E2F4', 'score': 10.34}, {'connected_gene': 'EXOC3L1', 'score': 10.34}, {'connected_gene': 'KIAA0895L', 'score': 10.34}, {'connected_gene': 'TMEM208', 'score': 9.9}, {'connected_gene': 'LRRC29', 'score': 9.9}, {'connected_gene': 'PARD6A', 'score': 9.83}, {'connected_gene': 'ACD', 'score': 9.83}, {'connected_gene': 'LRRC36', 'score': 9.65}, {'connected_gene': 'ENSG00000237718', 'score': 9.58}, {'connected_gene': 'CARMIL2', 'score': 9.56}, {'connected_gene': 'RANBP10', 'score': 9.23}, {'connected_gene': 'PLA2G15', 'score': 5.67}, {'connected_gene': 'PRMT7', 'score': 5.42}, {'connected_gene': 'GC16M067470', 'score': 0.34}]
chr16	GH16I067503	67503214	67505904	1.33	[{'connected_gene': 'GC16M067502', 'score': 550.77}, {'connected_gene': 'ZDHHC1', 'score': 27.6}, {'connected_gene': 'HSD11B2', 'score': 25.74}, {'connected_gene': 'ATP6V0D1', 'score': 23.9}, {'connected_gene': 'ENSG00000260465', 'score': 15.27}, {'connected_gene': 'CTCF', 'score': 12.41}, {'connected_gene': 'ENKD1', 'score': 11.97}, {'connected_gene': 'AGRP', 'score': 11.61}, {'connected_gene': 'CENPT', 'score': 11.23}, {'connected_gene': 'CARMIL2', 'score': 11.06}, {'connected_gene': 'NAE1', 'score': 10.98}, {'connected_gene': 'PARD6A', 'score': 10.81}, {'connected_gene': 'ACD', 'score': 10.81}, {'connected_gene': 'ENSG00000237718', 'score': 10.45}, {'connected_gene': 'EDC4', 'score': 10.39}, {'connected_gene': 'SLC7A6OS', 'score': 10.09}, {'connected_gene': 'FBXL8', 'score': 9.91}, {'connected_gene': 'LCAT', 'score': 9.81}, {'connected_gene': 'LRRC36', 'score': 9.59}, {'connected_gene': 'DPEP2', 'score': 8.01}, {'connected_gene': 'RIPOR1', 'score': 0.39}, {'connected_gene': 'LOC101927837', 'score': 0.34}]