PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000439211	[[79922046, 79924984], [79929695, 79929811], [79933701, 79933828], [79945207, 79945313], [79949826, 79949876], [79950222, 79950802]]	[[79924905, 79924984], [79929695, 79929811], [79933701, 79933828], [79945207, 79945313], [79949826, 79949876], [79950222, 79950308]]
ENST00000505337	[[79923835, 79924757], [79924857, 79924984], [79929695, 79929811], [79933701, 79933828], [79945207, 79945313], [79949826, 79949876], [79950222, 79950493]]	[[79924905, 79924984], [79929695, 79929811], [79933701, 79933828], [79945207, 79945313], [79949826, 79949876], [79950222, 79950308]]
ENST00000511032	[[79923942, 79924984], [79933701, 79933828], [79945207, 79945313], [79949826, 79949876], [79950222, 79950371]]	[[79924963, 79924984], [79933701, 79933828], [79945207, 79945313], [79949826, 79949876], [79950222, 79950308]]
ENST00000504396	[[79924041, 79924984], [79929695, 79929811], [79933701, 79933828], [79945207, 79945313], [79950222, 79950377]]	[[79924905, 79924984], [79929695, 79929811], [79933701, 79933828], [79945207, 79945293]]
ENST00000513048	[[79924356, 79924984], [79929695, 79929811], [79945207, 79945313], [79950222, 79950366]]	None
ENST00000508282	[[79924882, 79924984], [79929695, 79929811], [79933701, 79933828], [79945207, 79945313], [79949826, 79949920]]	None
ENST00000513314	[[79944759, 79945313], [79949826, 79949854]]	None
NM_000791	[[79922044, 79924984], [79929695, 79929811], [79933701, 79933828], [79945207, 79945313], [79949826, 79949876], [79950222, 79950800]]	[[79924905, 79924984], [79929695, 79929811], [79933701, 79933828], [79945207, 79945313], [79949826, 79949876], [79950222, 79950308]]
NM_001290357	[[79922044, 79924984], [79933701, 79933828], [79945207, 79945313], [79949826, 79949876], [79950222, 79950800]]	[[79924963, 79924984], [79933701, 79933828], [79945207, 79945313], [79949826, 79949876], [79950222, 79950308]]
NM_001290354	[[79922044, 79924984], [79929695, 79929811], [79933701, 79933828], [79945207, 79945313], [79950222, 79950800]]	[[79924905, 79924984], [79929695, 79929811], [79933701, 79933828], [79945207, 79945293]]
NR_110936	[[79922044, 79924984], [79929695, 79929811], [79945207, 79945313], [79950222, 79950800]]	None

Promoter

Chrom	Start	End	Description
chr5	79949935	79949949	CAGE_peak_5_at_DHFR_5end
chr5	79950379	79950380	CAGE_peak_3_at_DHFR_5end
chr5	79950775	79950821	CAGE_peak_1_at_DHFR_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I080399	80399151	80400778	1.36	[{'connected_gene': 'ZFYVE16', 'score': 27.4}, {'connected_gene': 'RNU6-211P', 'score': 10.92}, {'connected_gene': 'DHFR', 'score': 6.72}, {'connected_gene': 'FAM151B', 'score': 4.18}, {'connected_gene': 'GC05M080366', 'score': 0.29}]
chr5	GH05I080989	80989857	80991605	0.49	[{'connected_gene': 'RASGRF2', 'score': 6.67}, {'connected_gene': 'DHFR', 'score': 5.28}, {'connected_gene': 'ENSG00000251001', 'score': 0.44}, {'connected_gene': 'RASGRF2-AS1', 'score': 0.31}]
chr5	GH05I080959	80959121	80962239	1.92	[{'connected_gene': 'RASGRF2', 'score': 559.29}, {'connected_gene': 'RASGRF2-AS1', 'score': 550.77}, {'connected_gene': 'CKMT2-AS1', 'score': 11.9}, {'connected_gene': 'ENSG00000248794', 'score': 9.79}, {'connected_gene': 'MTX3', 'score': 9.72}, {'connected_gene': 'DHFR', 'score': 4.94}]
chr5	GH05I080569	80569882	80570627	1.31	[{'connected_gene': 'ANKRD34B', 'score': 550.77}, {'connected_gene': 'DHFR', 'score': 9.72}, {'connected_gene': 'RPL7P24', 'score': 0.2}]
chr5	GH05I080162	80162432	80162797	0.36	[{'connected_gene': 'SERINC5', 'score': 13.92}, {'connected_gene': 'ENSG00000251675', 'score': 11.74}, {'connected_gene': 'DHFR', 'score': 4.62}, {'connected_gene': 'MSH3', 'score': 1.77}, {'connected_gene': 'GC05P080147', 'score': 0.37}]
chr5	GH05I080251	80251315	80259062	2.46	[{'connected_gene': 'SERINC5', 'score': 550.77}, {'connected_gene': 'GC05P080257', 'score': 550.77}, {'connected_gene': 'PAPD4', 'score': 56.54}, {'connected_gene': 'RPS3AP20', 'score': 22.04}, {'connected_gene': 'MTX3', 'score': 12.0}, {'connected_gene': 'ENSG00000251675', 'score': 10.99}, {'connected_gene': 'CTD-2201I18.1', 'score': 10.3}, {'connected_gene': 'THBS4', 'score': 10.28}, {'connected_gene': 'DHFR', 'score': 5.27}, {'connected_gene': 'GC05P080258', 'score': 0.77}, {'connected_gene': 'GC05P080147', 'score': 0.14}]
chr5	GH05I080179	80179262	80196449	1.69	[{'connected_gene': 'SERINC5', 'score': 18.81}, {'connected_gene': 'ENSG00000251675', 'score': 11.2}, {'connected_gene': 'CTD-2201I18.1', 'score': 10.05}, {'connected_gene': 'THBS4', 'score': 9.98}, {'connected_gene': 'DHFR', 'score': 5.98}, {'connected_gene': 'LINC01337', 'score': 4.71}, {'connected_gene': 'GC05P080147', 'score': 0.26}]
chr5	GH05I080157	80157505	80160591	0.43	[{'connected_gene': 'SERINC5', 'score': 21.29}, {'connected_gene': 'ENSG00000251675', 'score': 12.18}, {'connected_gene': 'CTD-2201I18.1', 'score': 10.13}, {'connected_gene': 'THBS4', 'score': 10.05}, {'connected_gene': 'DHFR', 'score': 4.77}, {'connected_gene': 'GC05P080147', 'score': 0.39}]
chr5	GH05I080411	80411401	80412000	0.63	[{'connected_gene': 'DHFR', 'score': 6.57}, {'connected_gene': 'ZFYVE16', 'score': 0.77}, {'connected_gene': 'FAM151B', 'score': 0.18}]
chr5	GH05I080941	80941302	80942607	0.31	[{'connected_gene': 'DHFR', 'score': 5.25}, {'connected_gene': 'RASGRF2', 'score': 0.37}, {'connected_gene': 'RPS26P27', 'score': 0.17}]
chr5	GH05I080860	80860436	80862170	0.2	[{'connected_gene': 'DHFR', 'score': 22.66}, {'connected_gene': 'MSH3', 'score': 14.62}, {'connected_gene': 'RPS26P27', 'score': 0.44}, {'connected_gene': 'RASGRF2', 'score': 0.15}]
chr5	GH05I080654	80652842	80656635	2.02	[{'connected_gene': 'DHFR', 'score': 618.66}, {'connected_gene': 'MSH3', 'score': 580.73}, {'connected_gene': 'GC05P080655', 'score': 550.77}, {'connected_gene': 'CKMT2-AS1', 'score': 12.75}, {'connected_gene': 'ZCCHC9', 'score': 10.63}]
chr5	GH05I080754	80754772	80758519	0.91	[{'connected_gene': 'DHFR', 'score': 45.45}, {'connected_gene': 'MSH3', 'score': 17.13}, {'connected_gene': 'ENSG00000248967', 'score': 0.44}, {'connected_gene': 'GC05P080808', 'score': 0.23}]
chr5	GH05I080672	80672262	80672431	0.65	[{'connected_gene': 'DHFR', 'score': 0.37}, {'connected_gene': 'MSH3', 'score': 0.37}, {'connected_gene': 'ENSG00000248967', 'score': 0.19}]
chr5	GH05I080759	80759875	80760253	0.45	[{'connected_gene': 'DHFR', 'score': 8.17}, {'connected_gene': 'ENSG00000248967', 'score': 0.39}, {'connected_gene': 'GC05P080808', 'score': 0.25}, {'connected_gene': 'MSH3', 'score': 0.14}]
chr5	GH05I080667	80667853	80669044	0.7	[{'connected_gene': 'DHFR', 'score': 62.28}, {'connected_gene': 'MSH3', 'score': 33.16}, {'connected_gene': 'ENSG00000248967', 'score': 0.18}]
chr5	GH05I080269	80269905	80271456	1.26	[{'connected_gene': 'DHFR', 'score': 5.06}, {'connected_gene': 'GC05P080258', 'score': 0.39}, {'connected_gene': 'KRT18P45', 'score': 0.37}]
chr5	GH05I080607	80607904	80608197	0.74	[{'connected_gene': 'DHFR', 'score': 21.77}, {'connected_gene': 'ANKRD34B', 'score': 11.89}, {'connected_gene': 'GC05M080611', 'score': 0.77}, {'connected_gene': 'DBIP2', 'score': 0.77}]
chr5	GH05I080487	80487108	80490800	2.01	[{'connected_gene': 'LOC105379049', 'score': 550.77}, {'connected_gene': 'FAM151B', 'score': 550.77}, {'connected_gene': 'ZCCHC9', 'score': 25.34}, {'connected_gene': 'PAPD4', 'score': 15.85}, {'connected_gene': 'CKMT2-AS1', 'score': 15.85}, {'connected_gene': 'MTX3', 'score': 10.47}, {'connected_gene': 'ZFYVE16', 'score': 6.07}, {'connected_gene': 'DHFR', 'score': 5.33}, {'connected_gene': 'RPS27AP9', 'score': 0.39}]
chr5	GH05I080466	80466530	80468236	0.67	[{'connected_gene': 'CTD-2201I18.1', 'score': 9.69}, {'connected_gene': 'THBS4', 'score': 9.68}, {'connected_gene': 'DHFR', 'score': 5.35}, {'connected_gene': 'ZFYVE16', 'score': 4.97}, {'connected_gene': 'FAM151B', 'score': 0.34}]
chr5	GH05I080155	80155617	80157099	0.2	[{'connected_gene': 'ENSG00000251675', 'score': 12.2}, {'connected_gene': 'SERINC5', 'score': 10.27}, {'connected_gene': 'CTD-2201I18.1', 'score': 9.74}, {'connected_gene': 'THBS4', 'score': 9.65}, {'connected_gene': 'DHFR', 'score': 4.74}, {'connected_gene': 'GC05P080147', 'score': 0.44}]
chr5	GH05I080730	80730685	80730855	0.22	[{'connected_gene': 'ENSG00000248967', 'score': 0.37}, {'connected_gene': 'DHFR', 'score': 0.18}, {'connected_gene': 'MSH3', 'score': 0.18}]
chr5	GH05I080801	80801182	80801343	0.22	[{'connected_gene': 'ENSG00000249772', 'score': 9.52}, {'connected_gene': 'DHFR', 'score': 4.16}, {'connected_gene': 'GC05P080808', 'score': 0.44}, {'connected_gene': 'ENSG00000248967', 'score': 0.23}, {'connected_gene': 'MSH3', 'score': 0.11}]
chr5	GH05I080629	80629601	80630000	0.31	[{'connected_gene': 'ENSG00000249655', 'score': 550.77}, {'connected_gene': 'DHFR', 'score': 66.63}, {'connected_gene': 'LINC01337', 'score': 0.44}]
chr5	GH05I080651	80651663	80651722	0.5	[{'connected_gene': 'GC05M080652', 'score': 550.77}, {'connected_gene': 'DHFR', 'score': 550.77}, {'connected_gene': 'MTRNR2L2', 'score': 550.77}, {'connected_gene': 'GC05P080651', 'score': 550.77}, {'connected_gene': 'GC05M080651', 'score': 550.77}]
chr5	GH05I080885	80885145	80886173	0.72	[{'connected_gene': 'ENSG00000249772', 'score': 9.78}, {'connected_gene': 'DHFR', 'score': 8.92}, {'connected_gene': 'RPS26P27', 'score': 0.31}, {'connected_gene': 'RASGRF2', 'score': 0.18}]
chr5	GH05I080656	80652162	80652311	0.2	[{'connected_gene': 'GC05M080652', 'score': 550.77}, {'connected_gene': 'MTRNR2L2', 'score': 550.77}, {'connected_gene': 'GC05P080651', 'score': 550.77}, {'connected_gene': 'GC05M080651', 'score': 550.77}, {'connected_gene': 'DHFR', 'score': 68.5}, {'connected_gene': 'GC05P080655', 'score': 0.77}]
chr5	GH05I080655	80651782	80651951	0.2	[{'connected_gene': 'GC05M080652', 'score': 550.77}, {'connected_gene': 'MTRNR2L2', 'score': 550.77}, {'connected_gene': 'GC05P080651', 'score': 550.77}, {'connected_gene': 'GC05M080651', 'score': 550.77}, {'connected_gene': 'DHFR', 'score': 0.77}]
chr5	GH05I080652	80651162	80651311	0.2	[{'connected_gene': 'GC05M080652', 'score': 550.77}, {'connected_gene': 'MTRNR2L2', 'score': 550.77}, {'connected_gene': 'GC05P080651', 'score': 550.77}, {'connected_gene': 'GC05M080651', 'score': 550.77}, {'connected_gene': 'DHFR', 'score': 0.77}]
chr5	GH05I080650	80650642	80650911	0.2	[{'connected_gene': 'GC05M080652', 'score': 550.77}, {'connected_gene': 'MTRNR2L2', 'score': 550.77}, {'connected_gene': 'GC05P080651', 'score': 550.77}, {'connected_gene': 'GC05M080651', 'score': 550.77}, {'connected_gene': 'DHFR', 'score': 0.77}, {'connected_gene': 'ENSG00000249655', 'score': 0.37}]
chr5	GH05I080653	80651322	80651471	0.2	[{'connected_gene': 'GC05M080652', 'score': 550.77}, {'connected_gene': 'MTRNR2L2', 'score': 550.77}, {'connected_gene': 'GC05P080651', 'score': 550.77}, {'connected_gene': 'GC05M080651', 'score': 550.77}, {'connected_gene': 'DHFR', 'score': 52.63}]