PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000348222	[[74153952, 74154179], [74166036, 74166149], [74173845, 74174033], [74185272, 74185372], [74185836, 74186088]]	[[74154037, 74154179], [74166036, 74166149], [74173845, 74174033], [74185272, 74185372], [74185836, 74185863]]
ENST00000264093	[[74153952, 74154179], [74166036, 74166149], [74173845, 74174033], [74177711, 74177859], [74184251, 74184367], [74185272, 74185372], [74185836, 74186088]]	[[74154037, 74154179], [74166036, 74166149], [74173845, 74174033], [74177711, 74177859], [74184251, 74184367], [74185272, 74185372], [74185836, 74185863]]
ENST00000418996	[[74154001, 74154179], [74173845, 74174033], [74185272, 74185372], [74185836, 74186073]]	[[74154037, 74154179], [74173845, 74173973]]
ENST00000462551	[[74154019, 74154179], [74173845, 74174258]]	None
ENST00000489796	[[74154020, 74154179], [74166036, 74166149], [74173845, 74174033], [74177727, 74177859], [74185272, 74185372]]	None
ENST00000462685	[[74154023, 74154179], [74159724, 74159810], [74173845, 74174033], [74177753, 74177859], [74185272, 74185372], [74185836, 74185915]]	None
ENST00000493055	[[74154034, 74154179], [74166036, 74166149], [74173845, 74174180]]	None
ENST00000356837	[[74154034, 74154179], [74159724, 74159771], [74173845, 74174033], [74177711, 74177859], [74184251, 74184367], [74185272, 74185372], [74185836, 74186073]]	[[74154037, 74154179], [74159724, 74159771], [74173845, 74174033], [74177711, 74177859], [74184251, 74184367], [74185272, 74185372], [74185836, 74185863]]
NR_134895	[[74153952, 74154179], [74185272, 74185372], [74185836, 74186088]]	None
NR_134896	[[74153952, 74154179], [74173845, 74174015], [74185272, 74185372], [74185836, 74186088]]	None
NM_001318863	[[74153952, 74154179], [74173845, 74174015], [74177711, 74177859], [74184251, 74184367], [74185272, 74185372], [74185836, 74186088]]	[[74173881, 74174015], [74177711, 74177859], [74184251, 74184367], [74185272, 74185372], [74185836, 74185863]]
NR_134893	[[74153952, 74154179], [74173845, 74174033], [74185272, 74185372], [74185836, 74186088]]	None
NR_134898	[[74153952, 74154179], [74173845, 74174033], [74184251, 74184367], [74185272, 74185372], [74185836, 74186088]]	None
NR_134894	[[74153952, 74154179], [74173845, 74174033], [74177711, 74177859], [74185272, 74185372], [74185836, 74186088]]	None
NM_001318860	[[74153952, 74154179], [74173845, 74174033], [74177711, 74177859], [74184251, 74184367], [74185272, 74185372], [74185836, 74186088]]	[[74173881, 74174033], [74177711, 74177859], [74184251, 74184367], [74185272, 74185372], [74185836, 74185863]]
NM_001318859	[[74153952, 74154179], [74166036, 74166149], [74173845, 74174015], [74185272, 74185372], [74185836, 74186088]]	[[74154037, 74154179], [74166036, 74166149], [74173845, 74174015], [74185272, 74185372], [74185836, 74185863]]
NM_080918	[[74153952, 74154179], [74166036, 74166149], [74173845, 74174033], [74185272, 74185372], [74185836, 74186088]]	[[74154037, 74154179], [74166036, 74166149], [74173845, 74174033], [74185272, 74185372], [74185836, 74185863]]
NM_080916	[[74153952, 74154179], [74166036, 74166149], [74173845, 74174033], [74177711, 74177859], [74184251, 74184367], [74185272, 74185372], [74185836, 74186088]]	[[74154037, 74154179], [74166036, 74166149], [74173845, 74174033], [74177711, 74177859], [74184251, 74184367], [74185272, 74185372], [74185836, 74185863]]
NM_001318862	[[74153952, 74154179], [74159724, 74159810], [74173845, 74174015], [74177711, 74177859], [74184251, 74184367], [74185272, 74185372], [74185836, 74186088]]	[[74173881, 74174015], [74177711, 74177859], [74184251, 74184367], [74185272, 74185372], [74185836, 74185863]]
NR_134897	[[74153952, 74154179], [74159724, 74159810], [74173845, 74174033], [74177753, 74177859], [74185272, 74185372], [74185836, 74186088]]	None
NM_001318861	[[74153952, 74154179], [74159724, 74159810], [74173845, 74174033], [74177711, 74177859], [74184251, 74184367], [74185272, 74185372], [74185836, 74186088]]	[[74173881, 74174033], [74177711, 74177859], [74184251, 74184367], [74185272, 74185372], [74185836, 74185863]]

Promoter

Chrom	Start	End	Description
chr2	74153986	74154029	CAGE_peak_1_at_DGUOK_5end
chr2	74154032	74154067	CAGE_peak_2_at_DGUOK_5end
chr2	74154077	74154088	CAGE_peak_3_at_DGUOK_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I073931	73931549	73932992	0.83	[{'connected_gene': 'ACTG2', 'score': 10.7}, {'connected_gene': 'TET3', 'score': 10.48}, {'connected_gene': 'BOLA3', 'score': 9.77}, {'connected_gene': 'BOLA3-AS1', 'score': 9.77}, {'connected_gene': 'LOC107985899', 'score': 9.76}, {'connected_gene': 'DGUOK', 'score': 0.44}, {'connected_gene': 'GC02M073969', 'score': 0.28}]
chr2	GH02I073869	73869778	73871177	0.78	[{'connected_gene': 'ACTG2', 'score': 12.87}, {'connected_gene': 'DGUOK', 'score': 11.45}, {'connected_gene': 'BOLA3', 'score': 10.19}, {'connected_gene': 'BOLA3-AS1', 'score': 10.19}, {'connected_gene': 'STAMBP', 'score': 8.19}, {'connected_gene': 'HTRA2', 'score': 4.21}, {'connected_gene': 'LOC100420774', 'score': 0.44}, {'connected_gene': 'LOC105374806', 'score': 0.39}]
chr2	GH02I073921	73921314	73921463	0.96	[{'connected_gene': 'ACTG2', 'score': 11.46}, {'connected_gene': 'STAMBP', 'score': 11.32}, {'connected_gene': 'BOLA3', 'score': 10.23}, {'connected_gene': 'BOLA3-AS1', 'score': 10.23}, {'connected_gene': 'GC02M073905', 'score': 0.44}, {'connected_gene': 'DGUOK', 'score': 0.44}]
chr2	GH02I073892	73892168	73895330	1.69	[{'connected_gene': 'ACTG2', 'score': 562.36}, {'connected_gene': 'STAMBP', 'score': 15.71}, {'connected_gene': 'DGUOK', 'score': 11.42}, {'connected_gene': 'TET3', 'score': 10.43}, {'connected_gene': 'BOLA3', 'score': 10.22}, {'connected_gene': 'BOLA3-AS1', 'score': 10.22}, {'connected_gene': 'TPRKB', 'score': 9.75}, {'connected_gene': 'HTRA2', 'score': 5.62}, {'connected_gene': 'MOB1A', 'score': 4.9}, {'connected_gene': 'ALMS1', 'score': 4.55}, {'connected_gene': 'GC02M073905', 'score': 0.37}]
chr2	GH02I073934	73934996	73936946	0.2	[{'connected_gene': 'TET3', 'score': 11.47}, {'connected_gene': 'ACTG2', 'score': 10.66}, {'connected_gene': 'BOLA3', 'score': 10.05}, {'connected_gene': 'BOLA3-AS1', 'score': 10.05}, {'connected_gene': 'STAMBP', 'score': 10.04}, {'connected_gene': 'DGUOK-AS1', 'score': 4.34}, {'connected_gene': 'DGUOK', 'score': 0.44}, {'connected_gene': 'GC02M073969', 'score': 0.29}]
chr2	GH02I074055	74055644	74057465	0.31	[{'connected_gene': 'TET3', 'score': 11.92}, {'connected_gene': 'BOLA3', 'score': 10.62}, {'connected_gene': 'BOLA3-AS1', 'score': 10.62}, {'connected_gene': 'DGUOK', 'score': 10.26}, {'connected_gene': 'ACTG2', 'score': 10.01}, {'connected_gene': 'RTKN', 'score': 9.02}, {'connected_gene': 'DGUOK-AS1', 'score': 7.24}, {'connected_gene': 'ENSG00000279181', 'score': 0.22}, {'connected_gene': 'FNBP1P1', 'score': 0.21}]
chr2	GH02I073925	73925266	73928800	2.51	[{'connected_gene': 'DGUOK', 'score': 550.77}, {'connected_gene': 'ACTG2', 'score': 11.44}, {'connected_gene': 'STAMBP', 'score': 11.32}, {'connected_gene': 'BOLA3', 'score': 10.23}, {'connected_gene': 'BOLA3-AS1', 'score': 10.23}, {'connected_gene': 'DGUOK-AS1', 'score': 4.95}, {'connected_gene': 'GC02M073969', 'score': 0.26}]
chr2	GH02I073926	73925074	73925223	0.31	[{'connected_gene': 'DGUOK', 'score': 550.77}, {'connected_gene': 'ACTG2', 'score': 11.44}, {'connected_gene': 'STAMBP', 'score': 11.32}, {'connected_gene': 'BOLA3', 'score': 10.23}, {'connected_gene': 'BOLA3-AS1', 'score': 10.23}, {'connected_gene': 'GC02M073905', 'score': 0.39}]
chr2	GH02I073962	73962562	73964942	0.78	[{'connected_gene': 'DGUOK', 'score': 16.33}, {'connected_gene': 'BOLA3', 'score': 10.47}, {'connected_gene': 'BOLA3-AS1', 'score': 10.47}, {'connected_gene': 'ACTG2', 'score': 10.11}, {'connected_gene': 'GC02M073969', 'score': 0.77}, {'connected_gene': 'DGUOK-AS1', 'score': 0.37}]
chr2	GH02I073895	73895934	73897655	1.05	[{'connected_gene': 'DGUOK', 'score': 11.42}, {'connected_gene': 'TET3', 'score': 10.43}, {'connected_gene': 'STAMBP', 'score': 10.32}, {'connected_gene': 'BOLA3', 'score': 10.22}, {'connected_gene': 'BOLA3-AS1', 'score': 10.22}, {'connected_gene': 'TPRKB', 'score': 9.75}, {'connected_gene': 'ALMS1-IT1', 'score': 4.64}, {'connected_gene': 'SMYD5', 'score': 4.28}, {'connected_gene': 'ACTG2', 'score': 0.77}, {'connected_gene': 'GC02M073905', 'score': 0.37}]
chr2	GH02I073937	73937594	73940540	0.69	[{'connected_gene': 'DGUOK', 'score': 6.64}, {'connected_gene': 'GC02M073969', 'score': 0.31}]
chr2	GH02I073911	73911107	73918479	0.56	[{'connected_gene': 'LOC107985899', 'score': 5.01}, {'connected_gene': 'ALMS1P1', 'score': 3.97}, {'connected_gene': 'GC02M073905', 'score': 0.77}, {'connected_gene': 'DGUOK', 'score': 0.39}, {'connected_gene': 'ACTG2', 'score': 0.34}]
chr2	GH02I073947	73947716	73950000	0.92	[{'connected_gene': 'DGUOK-AS1', 'score': 4.37}, {'connected_gene': 'GC02M073969', 'score': 0.37}, {'connected_gene': 'DGUOK', 'score': 0.34}]
chr2	GH02I073877	73877201	73878000	0.84	[{'connected_gene': 'LOC100420774', 'score': 550.77}, {'connected_gene': 'STAMBP', 'score': 16.72}, {'connected_gene': 'DGUOK', 'score': 11.25}, {'connected_gene': 'TET3', 'score': 10.72}, {'connected_gene': 'BOLA3', 'score': 9.87}, {'connected_gene': 'BOLA3-AS1', 'score': 9.87}, {'connected_gene': 'ACTG2', 'score': 0.39}]
chr2	GH02I073952	73952481	73953000	0.92	[{'connected_gene': 'GC02M073969', 'score': 0.37}, {'connected_gene': 'DGUOK', 'score': 0.31}, {'connected_gene': 'DGUOK-AS1', 'score': 0.31}]
chr2	GH02I073957	73957683	73959338	0.2	[{'connected_gene': 'GC02M073969', 'score': 0.44}, {'connected_gene': 'DGUOK-AS1', 'score': 0.34}, {'connected_gene': 'DGUOK', 'score': 0.29}]