PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000601935	[[23708432, 23709389], [23710719, 23710816], [23844915, 23845011], [23845833, 23845960], [23869832, 23869999]]	[[23709358, 23709389], [23710719, 23710816], [23844915, 23845011], [23845833, 23845960], [23869832, 23869835]]
ENST00000600313	[[23716981, 23717119], [23844915, 23845011], [23845833, 23845960], [23869832, 23870014]]	[[23716988, 23717119], [23844915, 23845011], [23845833, 23845960], [23869832, 23869835]]
ENST00000596211	[[23756858, 23757034], [23844915, 23845011], [23845833, 23845960], [23869832, 23870014]]	[[23757020, 23757034], [23844915, 23845011], [23845833, 23845960], [23869832, 23869835]]
ENST00000359788	[[23835602, 23837508], [23844915, 23845011], [23845833, 23845960], [23869832, 23870004]]	[[23836027, 23837508], [23844915, 23845011], [23845833, 23845960], [23869832, 23869835]]
ENST00000599535	[[23837213, 23837508], [23844915, 23845011], [23845833, 23845960], [23868980, 23869183]]	[[23837213, 23837508], [23844915, 23844934]]
ENST00000597074	[[23837347, 23837508], [23839523, 23839624], [23844915, 23845011], [23845833, 23845960], [23869832, 23869942]]	[[23839583, 23839624], [23844915, 23845011], [23845833, 23845960], [23869832, 23869835]]
ENST00000601010	[[23841186, 23841474], [23844915, 23845011], [23845833, 23845960], [23869832, 23869990]]	[[23841394, 23841474], [23844915, 23845011], [23845833, 23845960], [23869832, 23869835]]
ENST00000599168	[[23844736, 23845011], [23845833, 23845960], [23869832, 23870022]]	[[23844907, 23845011], [23845833, 23845960], [23869832, 23869835]]
ENST00000600299	[[23835709, 23839936]]	None
NM_138330	[[23835707, 23837508], [23844915, 23845011], [23845833, 23845960], [23869832, 23870017]]	[[23836027, 23837508], [23844915, 23845011], [23845833, 23845960], [23869832, 23869835]]

Promoter

Chrom	Start	End	Description
chr19	23869970	23869991	CAGE_peak_1_at_ZNF675_5end
chr19	23870007	23870022	CAGE_peak_2_at_ZNF675_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I023801	23801284	23803068	0.38	[{'connected_gene': 'ZNF726', 'score': 7.84}, {'connected_gene': 'ZNF675', 'score': 4.36}, {'connected_gene': 'BNIP3P39', 'score': 0.77}, {'connected_gene': 'GC19P023828', 'score': 0.31}, {'connected_gene': 'ENSG00000233836', 'score': 0.28}, {'connected_gene': 'RPSAP58', 'score': 0.28}]
chr19	GH19I023685	23685118	23688172	1.98	[{'connected_gene': 'ZNF675', 'score': 565.25}, {'connected_gene': 'ZNF91', 'score': 19.32}, {'connected_gene': 'ENSG00000233836', 'score': 19.13}, {'connected_gene': 'ENSG00000268362', 'score': 18.72}, {'connected_gene': 'ZNF254', 'score': 15.82}, {'connected_gene': 'BNIP3P40', 'score': 10.46}, {'connected_gene': 'GC19P023634', 'score': 0.23}]
chr19	GH19I023510	23510199	23510308	0.31	[{'connected_gene': 'ZNF675', 'score': 4.17}, {'connected_gene': 'ZNF725P', 'score': 0.77}, {'connected_gene': 'PIR44465', 'score': 0.44}, {'connected_gene': 'GC19M023502', 'score': 0.44}]
chr19	GH19I023718	23718999	23719148	0.2	[{'connected_gene': 'ZNF675', 'score': 5.73}, {'connected_gene': 'GC19M023721', 'score': 0.77}, {'connected_gene': 'GC19M023703', 'score': 0.34}]
chr19	GH19I023698	23698799	23699737	0.59	[{'connected_gene': 'ZNF675', 'score': 0.39}, {'connected_gene': 'GC19M023721', 'score': 0.34}]
chr19	GH19I023672	23672619	23672863	0.22	[{'connected_gene': 'ZNF681', 'score': 12.02}, {'connected_gene': 'ENSG00000233836', 'score': 12.01}, {'connected_gene': 'ZNF675', 'score': 0.39}, {'connected_gene': 'GC19P023634', 'score': 0.28}]
chr19	GH19I023547	23547693	23551196	0.38	[{'connected_gene': 'LOC105372338', 'score': 550.77}, {'connected_gene': 'ENSG00000233836', 'score': 6.04}, {'connected_gene': 'ZNF675', 'score': 5.2}, {'connected_gene': 'ENSG00000268362', 'score': 4.19}, {'connected_gene': 'LOC105372337', 'score': 0.37}]
chr19	GH19I023525	23525425	23526228	0.31	[{'connected_gene': 'LINC01224', 'score': 10.31}, {'connected_gene': 'GOLGA2P9', 'score': 5.54}, {'connected_gene': 'ENSG00000233836', 'score': 4.59}, {'connected_gene': 'LOC105372337', 'score': 0.44}, {'connected_gene': 'ZNF725P', 'score': 0.39}, {'connected_gene': 'ZNF675', 'score': 0.1}]
chr19	GH19I023798	23798782	23801139	0.31	[{'connected_gene': 'BNIP3P39', 'score': 550.77}, {'connected_gene': 'ENSG00000233836', 'score': 18.87}, {'connected_gene': 'ZNF681', 'score': 12.09}, {'connected_gene': 'ENSG00000268362', 'score': 5.28}, {'connected_gene': 'ENSG00000269397', 'score': 5.04}, {'connected_gene': 'ZNF726', 'score': 4.68}, {'connected_gene': 'ZNF675', 'score': 4.33}, {'connected_gene': 'ZNF91', 'score': 3.89}, {'connected_gene': 'GC19P023828', 'score': 0.31}, {'connected_gene': 'RPSAP58', 'score': 0.28}]
chr19	GH19I023724	23724205	23724961	0.31	[{'connected_gene': 'ENSG00000233836', 'score': 19.0}, {'connected_gene': 'ZNF675', 'score': 12.93}, {'connected_gene': 'ZNF681', 'score': 12.64}, {'connected_gene': 'GC19M023721', 'score': 0.77}, {'connected_gene': 'GC19P023736', 'score': 0.39}, {'connected_gene': 'GC19M023703', 'score': 0.37}]
chr19	GH19I023553	23553319	23555728	0.2	[{'connected_gene': 'GC19M023551', 'score': 550.77}, {'connected_gene': 'ENSG00000268362', 'score': 6.13}, {'connected_gene': 'ENSG00000233836', 'score': 5.7}, {'connected_gene': 'ZNF675', 'score': 5.22}, {'connected_gene': 'LOC105372338', 'score': 0.77}]
chr19	GH19I023810	23810648	23811324	0.31	[{'connected_gene': 'ENSG00000233836', 'score': 15.08}, {'connected_gene': 'ZNF675', 'score': 5.55}, {'connected_gene': 'BNIP3P39', 'score': 0.39}, {'connected_gene': 'GC19P023828', 'score': 0.37}, {'connected_gene': 'RPSAP58', 'score': 0.25}]
chr19	GH19I023786	23786579	23788233	0.31	[{'connected_gene': 'ENSG00000268362', 'score': 12.64}, {'connected_gene': 'ZNF675', 'score': 5.52}, {'connected_gene': 'IPO5P1', 'score': 3.96}, {'connected_gene': 'BNIP3P39', 'score': 0.39}, {'connected_gene': 'GC19M023775', 'score': 0.39}, {'connected_gene': 'ENSG00000233836', 'score': 0.34}, {'connected_gene': 'RPSAP58', 'score': 0.34}]
chr19	GH19I023665	23665577	23667020	0.2	[{'connected_gene': 'ENSG00000233836', 'score': 6.11}, {'connected_gene': 'ZNF675', 'score': 0.34}, {'connected_gene': 'GC19P023634', 'score': 0.29}]