PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000600692	[[21324826, 21324989], [21326353, 21326446], [21349137, 21349264], [21350373, 21350469], [21358255, 21358277], [21365425, 21366895]]	[[21324986, 21324989], [21326353, 21326446], [21349137, 21349264], [21350373, 21350469], [21358255, 21358277], [21365425, 21365519]]
ENST00000599296	[[21324837, 21324989], [21326353, 21326446], [21349137, 21349264], [21350373, 21350469], [21352605, 21352685], [21365425, 21365463]]	[[21324986, 21324989], [21326353, 21326446], [21349137, 21349264], [21350373, 21350469], [21352605, 21352655]]
ENST00000594425	[[21324839, 21324989], [21326353, 21326446], [21372667, 21373034]]	[[21324986, 21324989], [21326353, 21326446], [21372667, 21372694]]
ENST00000311048	[[21324842, 21324989], [21326353, 21326446], [21349137, 21349264], [21350373, 21350469], [21365425, 21368805]]	[[21324986, 21324989], [21326353, 21326446], [21349137, 21349264], [21350373, 21350469], [21365425, 21366837]]
ENST00000598331	[[21324879, 21324989], [21326353, 21326446], [21333881, 21334001], [21349137, 21349264], [21350373, 21350469], [21365425, 21365961]]	[[21324986, 21324989], [21326353, 21326446], [21333881, 21334001], [21349137, 21349264], [21350373, 21350469], [21365425, 21365961]]
ENST00000593426	[[21367294, 21367400], [21372667, 21373029]]	None
ENST00000594821	[[21368746, 21369090], [21372667, 21372801]]	None
NM_133473	[[21324812, 21324989], [21326353, 21326446], [21349137, 21349264], [21350373, 21350469], [21365425, 21368805]]	[[21324986, 21324989], [21326353, 21326446], [21349137, 21349264], [21350373, 21350469], [21365425, 21366837]]
NM_001319126	[[21324812, 21324989], [21326353, 21326446], [21349137, 21349264], [21350373, 21350469], [21358255, 21358277], [21365425, 21368805]]	[[21350445, 21350469], [21358255, 21358277], [21365425, 21366837]]
NM_001319127	[[21324812, 21324989], [21326353, 21326446], [21349137, 21349264], [21350373, 21350469], [21352605, 21352685], [21365425, 21368805]]	[[21365427, 21366837]]
NM_001319124	[[21324812, 21324989], [21326353, 21326446], [21349137, 21349264], [21350370, 21350469], [21365425, 21368805]]	[[21324986, 21324989], [21326353, 21326446], [21349137, 21349264], [21350370, 21350469], [21365425, 21366837]]
NR_138052	[[21324812, 21324936], [21326353, 21326446], [21333881, 21334001], [21349137, 21349264], [21350370, 21350469], [21365425, 21367400], [21372667, 21378856]]	None
NR_138053	[[21324812, 21324989], [21326353, 21326446], [21349137, 21349264], [21350370, 21350469], [21365425, 21367400], [21372667, 21378856]]	None

Promoter

Chrom	Start	End	Description
chr19	21324829	21324855	CAGE_peak_1_at_ZNF431_5end
chr19	21324863	21324874	CAGE_peak_2_at_ZNF431_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I021019	21019975	21024577	2.18	[{'connected_gene': 'ZNF430', 'score': 550.77}, {'connected_gene': 'ZNF100', 'score': 22.82}, {'connected_gene': 'LOC641367', 'score': 22.08}, {'connected_gene': 'ZNF714', 'score': 22.01}, {'connected_gene': 'ZNF90', 'score': 19.49}, {'connected_gene': 'BNIP3P26', 'score': 18.57}, {'connected_gene': 'RPL7AP10', 'score': 17.68}, {'connected_gene': 'ZNF66', 'score': 14.57}, {'connected_gene': 'ZNF431', 'score': 13.79}, {'connected_gene': 'ZNF486', 'score': 13.19}, {'connected_gene': 'BNIP3P16', 'score': 12.52}, {'connected_gene': 'VN1R82P', 'score': 11.73}, {'connected_gene': 'LOC101928960', 'score': 10.87}, {'connected_gene': 'ZNF429', 'score': 6.49}, {'connected_gene': 'ZNF738', 'score': 4.38}, {'connected_gene': 'ENSG00000271598', 'score': 0.77}]
chr19	GH19I020922	20922455	20924600	1.84	[{'connected_gene': 'ZNF85', 'score': 550.77}, {'connected_gene': 'ZNF100', 'score': 31.82}, {'connected_gene': 'ZNF66', 'score': 15.5}, {'connected_gene': 'ZNF90', 'score': 12.39}, {'connected_gene': 'RPL7AP10', 'score': 11.75}, {'connected_gene': 'ZNF431', 'score': 11.27}, {'connected_gene': 'LOC641367', 'score': 10.92}, {'connected_gene': 'ZNF43', 'score': 10.63}, {'connected_gene': 'ZNF486', 'score': 9.76}, {'connected_gene': 'ENSG00000268416', 'score': 4.64}, {'connected_gene': 'ENSG00000279404', 'score': 0.44}]
chr19	GH19I021396	21396439	21398401	1.94	[{'connected_gene': 'ZNF493', 'score': 550.77}, {'connected_gene': 'LOC105372321', 'score': 33.68}, {'connected_gene': 'ZNF100', 'score': 31.85}, {'connected_gene': 'RPL7AP10', 'score': 11.75}, {'connected_gene': 'ZNF431', 'score': 11.26}, {'connected_gene': 'LOC641367', 'score': 10.95}, {'connected_gene': 'ZNF43', 'score': 10.65}, {'connected_gene': 'ZNF66', 'score': 10.49}, {'connected_gene': 'MTDHP4', 'score': 4.45}, {'connected_gene': 'ENSG00000269237', 'score': 0.44}]
chr19	GH19I020660	20660150	20662244	1.86	[{'connected_gene': 'ZNF626', 'score': 559.1}, {'connected_gene': 'ENSG00000269110', 'score': 550.77}, {'connected_gene': 'ENSG00000269779', 'score': 11.88}, {'connected_gene': 'RPL7AP10', 'score': 11.72}, {'connected_gene': 'ZNF431', 'score': 11.23}, {'connected_gene': 'GC19M022338', 'score': 0.77}, {'connected_gene': 'GC19M022340', 'score': 0.39}]
chr19	GH19I021091	21091091	21092882	0.38	[{'connected_gene': 'ZNF431', 'score': 6.18}, {'connected_gene': 'ZNF429', 'score': 4.39}, {'connected_gene': 'ZNF714', 'score': 0.44}, {'connected_gene': 'GC19M022124', 'score': 0.34}, {'connected_gene': 'RNA5SP469', 'score': 0.34}]
chr19	GH19I021141	21141125	21144781	1.98	[{'connected_gene': 'ZNF431', 'score': 550.77}, {'connected_gene': 'ZNF100', 'score': 12.96}, {'connected_gene': 'ZNF708', 'score': 12.57}, {'connected_gene': 'ZNF714', 'score': 11.84}, {'connected_gene': 'LOC641367', 'score': 10.93}, {'connected_gene': 'ENSG00000268555', 'score': 10.71}, {'connected_gene': 'LOC105372321', 'score': 6.59}, {'connected_gene': 'ZNF738', 'score': 5.56}, {'connected_gene': 'ZNF429', 'score': 4.7}, {'connected_gene': 'RPL7AP10', 'score': 0.44}]
chr19	GH19I020999	20999295	21000679	0.92	[{'connected_gene': 'ZNF100', 'score': 22.1}, {'connected_gene': 'ZNF431', 'score': 14.87}, {'connected_gene': 'RPL7AP10', 'score': 11.78}, {'connected_gene': 'LOC641367', 'score': 10.92}, {'connected_gene': 'GC19M022341', 'score': 0.37}, {'connected_gene': 'ENSG00000268326', 'score': 0.31}]
chr19	GH19I021766	21766200	21768228	1.95	[{'connected_gene': 'ZNF100', 'score': 657.64}, {'connected_gene': 'PIR33243', 'score': 550.77}, {'connected_gene': 'RPL7AP10', 'score': 11.71}, {'connected_gene': 'MTDHP4', 'score': 11.48}, {'connected_gene': 'LOC641367', 'score': 11.26}, {'connected_gene': 'ZNF431', 'score': 11.22}]
chr19	GH19I021081	21081535	21083401	1.96	[{'connected_gene': 'ZNF714', 'score': 562.04}, {'connected_gene': 'LOC641367', 'score': 25.51}, {'connected_gene': 'ZNF100', 'score': 20.92}, {'connected_gene': 'BNIP3P26', 'score': 18.34}, {'connected_gene': 'RPL7AP10', 'score': 10.84}, {'connected_gene': 'BNIP3P16', 'score': 10.75}, {'connected_gene': 'ZNF431', 'score': 6.17}, {'connected_gene': 'GC19M022124', 'score': 0.29}, {'connected_gene': 'RNA5SP469', 'score': 0.29}]
chr19	GH19I021126	21126618	21130798	1.05	[{'connected_gene': 'ZNF714', 'score': 22.07}, {'connected_gene': 'ZNF431', 'score': 6.72}, {'connected_gene': 'LOC105372321', 'score': 5.99}, {'connected_gene': 'BNIP3P17', 'score': 4.8}, {'connected_gene': 'ZNF493', 'score': 4.22}, {'connected_gene': 'VN1R81P', 'score': 0.77}]
chr19	GH19I021138	21138238	21138407	0.46	[{'connected_gene': 'ZNF714', 'score': 11.86}, {'connected_gene': 'ZNF431', 'score': 0.77}, {'connected_gene': 'VN1R81P', 'score': 0.39}]