PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367734	[[137813335, 137815531]]	[[137814488, 137815307]]
NM_175747	[[137813335, 137815531]]	[[137814488, 137815307]]

Promoter

Chrom	Start	End	Description
chr6	137815425	137815444	CAGE_peak_2_at_OLIG3_5end
chr6	137815524	137815537	CAGE_peak_1_at_OLIG3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I137387	137387197	137387405	0.54	[{'connected_gene': 'TNFAIP3', 'score': 11.59}, {'connected_gene': 'OLIG3', 'score': 10.92}, {'connected_gene': 'IFNGR1', 'score': 4.5}, {'connected_gene': 'LOC102723633', 'score': 0.31}, {'connected_gene': 'LOC105378017', 'score': 0.19}]
chr6	GH06I137789	137789987	137793057	1.59	[{'connected_gene': 'TNFAIP3', 'score': 20.82}, {'connected_gene': 'OLIG3', 'score': 2.42}, {'connected_gene': 'ENSG00000207300', 'score': 0.44}]
chr6	GH06I137701	137701126	137701803	0.93	[{'connected_gene': 'TNFAIP3', 'score': 22.0}, {'connected_gene': 'LOC100130476', 'score': 11.59}, {'connected_gene': 'LOC442263', 'score': 5.8}, {'connected_gene': 'IFNGR1', 'score': 3.64}, {'connected_gene': 'OLIG3', 'score': 2.47}, {'connected_gene': 'ENSG00000283265', 'score': 0.44}, {'connected_gene': 'LOC102723649', 'score': 0.28}]
chr6	GH06I137939	137939504	137940743	1.3	[{'connected_gene': 'TNFAIP3', 'score': 13.51}, {'connected_gene': 'LOC100130476', 'score': 12.34}, {'connected_gene': 'ENSG00000226004', 'score': 9.73}, {'connected_gene': 'OLIG3', 'score': 2.12}, {'connected_gene': 'GC06M137892', 'score': 0.25}]
chr6	GH06I137826	137826929	137833330	1.59	[{'connected_gene': 'TNFAIP3', 'score': 27.87}, {'connected_gene': 'LOC100130476', 'score': 18.94}, {'connected_gene': 'OLIG3', 'score': 11.16}, {'connected_gene': 'ENSG00000207300', 'score': 0.25}]
chr6	GH06I137614	137614575	137614957	0.4	[{'connected_gene': 'PERP', 'score': 9.42}, {'connected_gene': 'OLIG3', 'score': 9.24}, {'connected_gene': 'GC06M137552', 'score': 0.26}, {'connected_gene': 'BTF3L4P3', 'score': 0.19}]
chr6	GH06I137307	137307439	137308000	0.38	[{'connected_gene': 'IFNGR1', 'score': 10.3}, {'connected_gene': 'OLIG3', 'score': 9.49}, {'connected_gene': 'LOC105378017', 'score': 0.44}]
chr6	GH06I137271	137271684	137271833	0.64	[{'connected_gene': 'IFNGR1', 'score': 11.0}, {'connected_gene': 'OLIG3', 'score': 10.37}, {'connected_gene': 'LOC105378017', 'score': 0.26}]
chr6	GH06I137269	137269146	137270334	0.43	[{'connected_gene': 'IFNGR1', 'score': 11.02}, {'connected_gene': 'OLIG3', 'score': 10.37}, {'connected_gene': 'LOC105378017', 'score': 0.26}]
chr6	GH06I137245	137245944	137249216	1.15	[{'connected_gene': 'IFNGR1', 'score': 13.04}, {'connected_gene': 'OLIG3', 'score': 9.57}, {'connected_gene': 'GC06P137179', 'score': 0.2}, {'connected_gene': 'LOC105378017', 'score': 0.2}]
chr6	GH06I137277	137277958	137278424	0.86	[{'connected_gene': 'IFNGR1', 'score': 11.15}, {'connected_gene': 'OLIG3', 'score': 9.53}, {'connected_gene': 'LOC105378017', 'score': 0.28}]
chr6	GH06I137240	137240001	137242688	1.27	[{'connected_gene': 'IFNGR1', 'score': 13.06}, {'connected_gene': 'IL22RA2', 'score': 11.36}, {'connected_gene': 'OLIG3', 'score': 9.57}, {'connected_gene': 'GC06P137179', 'score': 0.21}, {'connected_gene': 'LOC105378017', 'score': 0.19}]
chr6	GH06I137092	137092004	137092153	0.31	[{'connected_gene': 'OLIG3', 'score': 10.11}, {'connected_gene': 'GC06P137115', 'score': 0.34}, {'connected_gene': 'IL20RA', 'score': 0.25}]
chr6	GH06I137093	137093313	137094613	1.01	[{'connected_gene': 'OLIG3', 'score': 9.48}, {'connected_gene': 'GC06P137115', 'score': 0.34}, {'connected_gene': 'IL20RA', 'score': 0.25}]
chr6	GH06I137076	137076624	137076813	0.79	[{'connected_gene': 'OLIG3', 'score': 9.64}, {'connected_gene': 'IL20RA', 'score': 0.29}, {'connected_gene': 'GC06P137115', 'score': 0.28}]
chr6	GH06I137688	137688720	137688816	0.42	[{'connected_gene': 'OLIG3', 'score': 9.17}, {'connected_gene': 'LOC442263', 'score': 6.92}, {'connected_gene': 'TNFAIP3', 'score': 6.35}, {'connected_gene': 'IFNGR1', 'score': 2.67}, {'connected_gene': 'ENSG00000283265', 'score': 0.77}, {'connected_gene': 'LOC105378018', 'score': 0.37}, {'connected_gene': 'LOC102723649', 'score': 0.34}]
chr6	GH06I137643	137642136	137642943	0.2	[{'connected_gene': 'OLIG3', 'score': 10.03}, {'connected_gene': 'LOC442263', 'score': 6.81}, {'connected_gene': 'GC06M137552', 'score': 0.39}, {'connected_gene': 'BTF3L4P3', 'score': 0.15}]
chr6	GH06I137638	137638123	137640035	0.57	[{'connected_gene': 'OLIG3', 'score': 10.14}, {'connected_gene': 'LOC442263', 'score': 7.21}, {'connected_gene': 'GC06M137552', 'score': 0.37}, {'connected_gene': 'BTF3L4P3', 'score': 0.16}]
chr6	GH06I137423	137423124	137424674	0.62	[{'connected_gene': 'OLIG3', 'score': 11.04}, {'connected_gene': 'MAP3K5', 'score': 4.54}, {'connected_gene': 'LOC102723633', 'score': 0.44}, {'connected_gene': 'PIR59411', 'score': 0.19}]
chr6	GH06I137559	137559564	137559733	0.31	[{'connected_gene': 'OLIG3', 'score': 10.84}, {'connected_gene': 'BTF3L4P3', 'score': 0.37}, {'connected_gene': 'GC06M137552', 'score': 0.15}]
chr6	GH06I137634	137634284	137634413	0.56	[{'connected_gene': 'OLIG3', 'score': 10.15}, {'connected_gene': 'GC06M137552', 'score': 0.34}, {'connected_gene': 'BTF3L4P3', 'score': 0.17}]
chr6	GH06I137636	137636897	137637933	1	[{'connected_gene': 'OLIG3', 'score': 10.14}, {'connected_gene': 'GC06M137552', 'score': 0.37}, {'connected_gene': 'BTF3L4P3', 'score': 0.16}]
chr6	GH06I137588	137588630	137589693	0.88	[{'connected_gene': 'OLIG3', 'score': 10.64}, {'connected_gene': 'BTF3L4P3', 'score': 0.26}, {'connected_gene': 'GC06M137552', 'score': 0.2}]
chr6	GH06I137560	137559971	137560075	0.43	[{'connected_gene': 'OLIG3', 'score': 10.84}, {'connected_gene': 'BTF3L4P3', 'score': 0.37}, {'connected_gene': 'GC06M137552', 'score': 0.15}]
chr6	GH06I137690	137690164	137690313	0.2	[{'connected_gene': 'OLIG3', 'score': 9.17}, {'connected_gene': 'ENSG00000283265', 'score': 0.77}, {'connected_gene': 'LOC105378018', 'score': 0.37}, {'connected_gene': 'LOC102723649', 'score': 0.34}]
chr6	GH06I137341	137341146	137343998	1	[{'connected_gene': 'OLIG3', 'score': 10.28}, {'connected_gene': 'LOC105378017', 'score': 0.31}, {'connected_gene': 'LOC102723633', 'score': 0.19}]
chr6	GH06I137425	137425778	137425784	0.2	[{'connected_gene': 'OLIG3', 'score': 10.76}, {'connected_gene': 'LOC102723633', 'score': 0.39}, {'connected_gene': 'PIR59411', 'score': 0.2}]
chr6	GH06I137452	137452064	137452213	0.31	[{'connected_gene': 'OLIG3', 'score': 10.84}, {'connected_gene': 'LOC102723633', 'score': 0.28}, {'connected_gene': 'PIR59411', 'score': 0.26}]
chr6	GH06I137432	137432136	137432455	0.72	[{'connected_gene': 'OLIG3', 'score': 11.27}, {'connected_gene': 'LOC102723633', 'score': 0.37}, {'connected_gene': 'PIR59411', 'score': 0.21}]
chr6	GH06I137650	137650424	137653754	0.69	[{'connected_gene': 'OLIG3', 'score': 10.07}, {'connected_gene': 'LOC100130476', 'score': 10.06}, {'connected_gene': 'TNFAIP3', 'score': 10.06}, {'connected_gene': 'LOC442263', 'score': 7.2}, {'connected_gene': 'GC06M137552', 'score': 0.77}, {'connected_gene': 'BTF3L4P3', 'score': 0.14}]
chr6	GH06I137120	137120952	137122166	0.66	[{'connected_gene': 'OLIG3', 'score': 8.85}, {'connected_gene': 'GC06P137115', 'score': 0.44}, {'connected_gene': 'PIR45634', 'score': 0.28}]
chr6	GH06I137494	137494464	137494613	0.43	[{'connected_gene': 'OLIG3', 'score': 550.77}, {'connected_gene': 'PIR59411', 'score': 550.77}, {'connected_gene': 'PIR32178', 'score': 0.31}]
chr6	GH06I137495	137495684	137495833	0.46	[{'connected_gene': 'OLIG3', 'score': 550.77}, {'connected_gene': 'PIR59411', 'score': 550.77}, {'connected_gene': 'PIR32178', 'score': 0.31}]
chr6	GH06I137122	137122644	137122793	0.79	[{'connected_gene': 'OLIG3', 'score': 8.85}, {'connected_gene': 'GC06P137115', 'score': 0.44}, {'connected_gene': 'PIR45634', 'score': 0.28}]
chr6	GH06I137496	137496404	137496453	0.38	[{'connected_gene': 'OLIG3', 'score': 0.77}, {'connected_gene': 'PIR32178', 'score': 0.31}]
chr6	GH06I137497	137494292	137494351	0.73	[{'connected_gene': 'OLIG3', 'score': 550.77}, {'connected_gene': 'PIR59411', 'score': 550.77}]
chr6	GH06I137098	137098966	137107962	1.24	[{'connected_gene': 'IL22RA2', 'score': 11.5}, {'connected_gene': 'IFNGR1', 'score': 11.29}, {'connected_gene': 'OLIG3', 'score': 9.38}, {'connected_gene': 'GC06P137115', 'score': 0.39}, {'connected_gene': 'IL20RA', 'score': 0.22}]
chr6	GH06I137236	137236601	137239000	1.17	[{'connected_gene': 'IL22RA2', 'score': 11.37}, {'connected_gene': 'OLIG3', 'score': 8.76}, {'connected_gene': 'IFNGR1', 'score': 6.59}, {'connected_gene': 'MAP3K5', 'score': 1.17}, {'connected_gene': 'GC06P137179', 'score': 0.22}, {'connected_gene': 'LOC105378017', 'score': 0.18}]
chr6	GH06I137239	137239401	137239800	0.4	[{'connected_gene': 'IL22RA2', 'score': 11.36}, {'connected_gene': 'OLIG3', 'score': 8.76}, {'connected_gene': 'IFNGR1', 'score': 0.37}, {'connected_gene': 'GC06P137179', 'score': 0.21}, {'connected_gene': 'LOC105378017', 'score': 0.19}]
chr6	GH06I137414	137414801	137416333	0.94	[{'connected_gene': 'LOC102723633', 'score': 550.77}, {'connected_gene': 'OLIG3', 'score': 10.41}, {'connected_gene': 'PIR59411', 'score': 0.18}]
chr6	GH06I136964	136964048	136965310	0.2	[{'connected_gene': 'NHEG1', 'score': 12.27}, {'connected_gene': 'ENSG00000235399', 'score': 12.25}, {'connected_gene': 'OLIG3', 'score': 9.03}, {'connected_gene': 'RPL35AP3', 'score': 0.44}, {'connected_gene': 'ENSG00000207247', 'score': 0.31}]
chr6	GH06I137702	137702393	137702735	0.54	[{'connected_gene': 'LOC100130476', 'score': 11.59}, {'connected_gene': 'TNFAIP3', 'score': 11.58}, {'connected_gene': 'OLIG3', 'score': 5.49}, {'connected_gene': 'LOC442263', 'score': 0.77}, {'connected_gene': 'ENSG00000283265', 'score': 0.44}, {'connected_gene': 'LOC102723649', 'score': 0.28}]
chr6	GH06I137655	137655969	137661349	0.98	[{'connected_gene': 'LOC100130476', 'score': 10.52}, {'connected_gene': 'TNFAIP3', 'score': 10.52}, {'connected_gene': 'OLIG3', 'score': 9.73}, {'connected_gene': 'LOC442263', 'score': 7.54}, {'connected_gene': 'GC06M137552', 'score': 0.77}, {'connected_gene': 'LOC102723649', 'score': 0.44}]
chr6	GH06I137693	137693000	137693200	0.2	[{'connected_gene': 'ENSG00000283265', 'score': 550.77}, {'connected_gene': 'OLIG3', 'score': 9.17}, {'connected_gene': 'LOC442263', 'score': 0.39}, {'connected_gene': 'LOC102723649', 'score': 0.31}]
chr6	GH06I137512	137512884	137513183	0.78	[{'connected_gene': 'PIR32178', 'score': 0.39}, {'connected_gene': 'OLIG3', 'score': 0.37}]
chr6	GH06I137513	137513221	137513378	0.31	[{'connected_gene': 'PIR32178', 'score': 0.39}, {'connected_gene': 'OLIG3', 'score': 0.37}]