PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000370456	[[89829616, 89829686], [89834087, 89834300], [89835104, 89835232], [89843661, 89843771], [89843975, 89844172], [89845944, 89846190], [89847252, 89847533], [89848222, 89848435], [89849210, 89849313], [89849651, 89849845], [89850788, 89852020]]	[[89834110, 89834300], [89835104, 89835232], [89843661, 89843771], [89843975, 89844172], [89845944, 89846190], [89847252, 89847533], [89848222, 89848435], [89849210, 89849313], [89849651, 89849845], [89850788, 89851028]]
ENST00000535065	[[89829618, 89829686], [89843661, 89843771], [89843975, 89844172], [89845944, 89846190], [89847252, 89847533], [89848222, 89848435], [89849210, 89849313], [89849651, 89849845], [89850788, 89851446]]	[[89843733, 89843771], [89843975, 89844172], [89845944, 89846190], [89847252, 89847533], [89848222, 89848435], [89849210, 89849313], [89849651, 89849845], [89850788, 89851028]]
NM_001320257	[[89829435, 89829686], [89843661, 89843771], [89843975, 89844172], [89845944, 89846190], [89847252, 89847533], [89848222, 89848435], [89849210, 89849313], [89849651, 89849845], [89850788, 89853719]]	[[89843733, 89843771], [89843975, 89844172], [89845944, 89846190], [89847252, 89847533], [89848222, 89848435], [89849210, 89849313], [89849651, 89849845], [89850788, 89851028]]
NM_198460	[[89829435, 89829686], [89834087, 89834300], [89835104, 89835232], [89843661, 89843771], [89843975, 89844172], [89845944, 89846190], [89847252, 89847533], [89848222, 89848435], [89849210, 89849313], [89849651, 89849845], [89850788, 89853719]]	[[89834110, 89834300], [89835104, 89835232], [89843661, 89843771], [89843975, 89844172], [89845944, 89846190], [89847252, 89847533], [89848222, 89848435], [89849210, 89849313], [89849651, 89849845], [89850788, 89851028]]

Promoter

Chrom	Start	End	Description
chr1	89829425	89829479	CAGE_peak_2_at_GBP6_5end
chr1	89829517	89829537	CAGE_peak_3_at_GBP6_5end
chr1	89829610	89829627	CAGE_peak_1_at_GBP6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I089451	89451099	89451248	0.52	[{'connected_gene': 'LRRC8C', 'score': 17.31}, {'connected_gene': 'GBP6', 'score': 11.08}, {'connected_gene': 'GBP3', 'score': 9.36}, {'connected_gene': 'GBP2', 'score': 6.71}, {'connected_gene': 'GBP4', 'score': 2.81}, {'connected_gene': 'GBP1', 'score': 2.36}, {'connected_gene': 'LRRC8B', 'score': 1.81}, {'connected_gene': 'GC01M089463', 'score': 0.37}, {'connected_gene': 'PIR33822', 'score': 0.34}]
chr1	GH01I088990	88990547	88994566	2.49	[{'connected_gene': 'KYAT3', 'score': 550.77}, {'connected_gene': 'RBMXL1', 'score': 550.77}, {'connected_gene': 'GBP3', 'score': 86.11}, {'connected_gene': 'GBP5', 'score': 10.91}, {'connected_gene': 'GBP6', 'score': 10.8}, {'connected_gene': 'GBP7', 'score': 5.12}, {'connected_gene': 'PTGES3P1', 'score': 4.75}, {'connected_gene': 'GC01M088952', 'score': 0.28}]
chr1	GH01I089101	89101446	89102833	0.2	[{'connected_gene': 'GBP3', 'score': 20.25}, {'connected_gene': 'GBP6', 'score': 10.7}, {'connected_gene': 'PTGES3P1', 'score': 4.94}, {'connected_gene': 'GC01M089104', 'score': 0.77}, {'connected_gene': 'GBP1', 'score': 0.28}, {'connected_gene': 'LOC105378841', 'score': 0.2}]
chr1	GH01I089020	89020988	89023716	1.96	[{'connected_gene': 'GBP3', 'score': 562.66}, {'connected_gene': 'GC01M089021', 'score': 550.77}, {'connected_gene': 'ENSG00000202385', 'score': 550.77}, {'connected_gene': 'GBP6', 'score': 10.58}, {'connected_gene': 'GBP5', 'score': 10.22}, {'connected_gene': 'PKN2', 'score': 10.0}, {'connected_gene': 'GBP1', 'score': 5.1}]
chr1	GH01I089103	89103031	89110672	0.56	[{'connected_gene': 'PTGES3P1', 'score': 556.21}, {'connected_gene': 'GBP7', 'score': 35.74}, {'connected_gene': 'GBP3', 'score': 23.45}, {'connected_gene': 'GBP6', 'score': 10.7}, {'connected_gene': 'LOC100421401', 'score': 10.26}, {'connected_gene': 'GBP5', 'score': 10.21}, {'connected_gene': 'GC01M089104', 'score': 0.77}, {'connected_gene': 'LOC105378842', 'score': 0.34}, {'connected_gene': 'GBP2', 'score': 0.26}]
chr1	GH01I089354	89354201	89354600	0.66	[{'connected_gene': 'GBP2', 'score': 13.37}, {'connected_gene': 'GBP5', 'score': 10.15}, {'connected_gene': 'GBP1', 'score': 9.3}, {'connected_gene': 'GBP4', 'score': 7.52}, {'connected_gene': 'GTF2B', 'score': 5.81}, {'connected_gene': 'KYAT3', 'score': 2.76}, {'connected_gene': 'LRRC8C', 'score': 1.7}, {'connected_gene': 'GBP6', 'score': 0.44}, {'connected_gene': 'PIR56754', 'score': 0.39}]
chr1	GH01I089069	89069665	89070800	1.04	[{'connected_gene': 'GBP1', 'score': 47.24}, {'connected_gene': 'GBP5', 'score': 29.84}, {'connected_gene': 'GBP7', 'score': 26.06}, {'connected_gene': 'GBP4', 'score': 24.99}, {'connected_gene': 'GBP2', 'score': 11.45}, {'connected_gene': 'GBP6', 'score': 10.26}, {'connected_gene': 'GBP3', 'score': 9.61}, {'connected_gene': 'GTF2B', 'score': 6.02}, {'connected_gene': 'GC01M089104', 'score': 0.29}, {'connected_gene': 'LOC105378841', 'score': 0.28}]
chr1	GH01I089351	89351593	89351858	0.4	[{'connected_gene': 'GBP1', 'score': 39.0}, {'connected_gene': 'GBP5', 'score': 34.74}, {'connected_gene': 'GBP4', 'score': 17.32}, {'connected_gene': 'GBP2', 'score': 16.77}, {'connected_gene': 'GTF2B', 'score': 8.28}, {'connected_gene': 'LRRC8C', 'score': 3.82}, {'connected_gene': 'GBP3', 'score': 2.34}, {'connected_gene': 'PIR56754', 'score': 0.44}, {'connected_gene': 'GBP6', 'score': 0.39}]
chr1	GH01I089284	89284727	89288153	1.33	[{'connected_gene': 'GBP1', 'score': 61.46}, {'connected_gene': 'GBP5', 'score': 35.65}, {'connected_gene': 'GBP4', 'score': 35.19}, {'connected_gene': 'GBP2', 'score': 14.64}, {'connected_gene': 'GBP6', 'score': 10.85}, {'connected_gene': 'GTF2B', 'score': 7.4}, {'connected_gene': 'LRRC8C', 'score': 3.51}, {'connected_gene': 'GBP3', 'score': 1.71}, {'connected_gene': 'LOC729930', 'score': 0.77}, {'connected_gene': 'GC01P089283', 'score': 0.77}, {'connected_gene': 'LOC100421401', 'score': 0.25}]
chr1	GH01I088983	88983458	88986492	1	[{'connected_gene': 'GBP6', 'score': 10.73}, {'connected_gene': 'RBMXL1', 'score': 10.62}, {'connected_gene': 'GBP5', 'score': 10.42}, {'connected_gene': 'LOC100421401', 'score': 10.22}, {'connected_gene': 'KYAT3', 'score': 0.44}, {'connected_gene': 'GC01M088952', 'score': 0.29}]
chr1	GH01I089365	89365052	89365657	0.2	[{'connected_gene': 'GBP6', 'score': 550.77}, {'connected_gene': 'LRRC8B', 'score': 4.7}, {'connected_gene': 'CAPNS1P1', 'score': 0.31}]
chr1	GH01I089362	89362835	89364608	1.36	[{'connected_gene': 'GBP6', 'score': 554.85}, {'connected_gene': 'LRRC8B', 'score': 4.67}, {'connected_gene': 'LOC101927975', 'score': 4.29}, {'connected_gene': 'PIR56754', 'score': 0.34}]
chr1	GH01I089455	89455282	89455411	0.6	[{'connected_gene': 'GBP6', 'score': 11.51}, {'connected_gene': 'GBP5', 'score': 10.45}, {'connected_gene': 'GC01M089463', 'score': 0.39}, {'connected_gene': 'PIR33822', 'score': 0.31}]
chr1	GH01I088989	88989801	88990000	0.38	[{'connected_gene': 'GBP5', 'score': 10.91}, {'connected_gene': 'GBP6', 'score': 10.8}, {'connected_gene': 'KYAT3', 'score': 0.77}, {'connected_gene': 'RBMXL1', 'score': 0.77}, {'connected_gene': 'GC01M088952', 'score': 0.28}]
chr1	GH01I089295	89295715	89297104	0.2	[{'connected_gene': 'GBP5', 'score': 11.7}, {'connected_gene': 'GBP6', 'score': 10.92}, {'connected_gene': 'GC01P089291', 'score': 0.44}, {'connected_gene': 'ENSG00000233235', 'score': 0.31}, {'connected_gene': 'LOC100421401', 'score': 0.22}]
chr1	GH01I089352	89352200	89352401	0.38	[{'connected_gene': 'GBP5', 'score': 11.36}, {'connected_gene': 'PIR56754', 'score': 0.44}, {'connected_gene': 'GBP6', 'score': 0.39}]
chr1	GH01I089358	89358600	89358800	0.63	[{'connected_gene': 'GBP4', 'score': 10.92}, {'connected_gene': 'GBP5', 'score': 10.74}, {'connected_gene': 'LRRC8B', 'score': 4.75}, {'connected_gene': 'GBP6', 'score': 0.44}, {'connected_gene': 'PIR56754', 'score': 0.37}]