PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000375173	[[100362361, 100365437]]	None
ENST00000375172	[[100362362, 100363402], [100364999, 100365049], [100367008, 100367147], [100367764, 100367923], [100368424, 100368543], [100372627, 100372733], [100373855, 100373981], [100380038, 100380159], [100387962, 100388279], [100389587, 100389894], [100395524, 100395583]]	[[100389664, 100389844]]
ENST00000341170	[[100362364, 100365049], [100367008, 100367147], [100367764, 100367923], [100368424, 100368543], [100372627, 100372733], [100373855, 100373981], [100380038, 100380159], [100387962, 100388279], [100389679, 100389894], [100395524, 100395857]]	[[100364750, 100365049], [100367008, 100367147], [100367764, 100367923], [100368424, 100368543], [100372627, 100372733], [100373855, 100373981], [100380038, 100380159], [100387962, 100388279], [100389679, 100389844]]
ENST00000375165	[[100366350, 100367147], [100367764, 100367923], [100368424, 100368543], [100380038, 100380159], [100387962, 100388279], [100389587, 100389686]]	[[100389664, 100389686]]
ENST00000354801	[[100366976, 100367147], [100367764, 100367923], [100368424, 100368543], [100380038, 100380159], [100387962, 100388279], [100389679, 100389894], [100395524, 100395962]]	[[100366976, 100367147], [100367764, 100367923], [100368424, 100368543], [100380038, 100380093]]
ENST00000375163	[[100372491, 100372733], [100373855, 100373981], [100380038, 100380159], [100387962, 100388057]]	None
ENST00000484708	[[100373126, 100373404], [100373855, 100373981], [100380038, 100380134]]	None
NM_139246	[[100362361, 100365049], [100367008, 100367147], [100367764, 100367923], [100368424, 100368543], [100372627, 100372733], [100373855, 100373981], [100380038, 100380159], [100387962, 100388279], [100389679, 100389894], [100395524, 100395962]]	[[100364750, 100365049], [100367008, 100367147], [100367764, 100367923], [100368424, 100368543], [100372627, 100372733], [100373855, 100373981], [100380038, 100380159], [100387962, 100388279], [100389679, 100389844]]

Promoter

Chrom	Start	End	Description
chr9	100395560	100395571	CAGE_peak_4_at_TSTD2_5end
chr9	100395590	100395614	CAGE_peak_2_at_TSTD2_5end
chr9	100395625	100395682	CAGE_peak_1_at_TSTD2_5end
chr9	100395756	100395784	CAGE_peak_5_at_TSTD2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I098070	98070871	98076600	1.29	[{'connected_gene': 'TRIM14', 'score': 20.43}, {'connected_gene': 'TBC1D2', 'score': 11.89}, {'connected_gene': 'RNU6-918P', 'score': 11.46}, {'connected_gene': 'CORO2A', 'score': 11.43}, {'connected_gene': 'TSTD2', 'score': 10.7}, {'connected_gene': 'HEMGN', 'score': 10.56}, {'connected_gene': 'NANS', 'score': 9.03}, {'connected_gene': 'PIR35853', 'score': 0.39}, {'connected_gene': 'GC09M098254', 'score': 0.39}, {'connected_gene': 'GC09M098251', 'score': 0.39}]
chr9	GH09I098117	98117444	98123006	2.54	[{'connected_gene': 'TRIM14', 'score': 559.71}, {'connected_gene': 'NCBP1', 'score': 56.4}, {'connected_gene': 'ZNF322P1', 'score': 38.92}, {'connected_gene': 'TSTD2', 'score': 38.4}, {'connected_gene': 'ENSG00000254633', 'score': 26.39}, {'connected_gene': 'CORO2A', 'score': 22.74}, {'connected_gene': 'ANKS6', 'score': 21.53}, {'connected_gene': 'CCDC180', 'score': 18.62}, {'connected_gene': 'LOC105376171', 'score': 12.1}, {'connected_gene': 'XPA', 'score': 11.9}, {'connected_gene': 'TBC1D2', 'score': 10.26}, {'connected_gene': 'TRMO', 'score': 5.09}, {'connected_gene': 'FOXE1', 'score': 5.03}, {'connected_gene': 'HEMGN', 'score': 1.26}, {'connected_gene': 'PIR36587', 'score': 0.39}]
chr9	GH09I097404	97404407	97407730	1.13	[{'connected_gene': 'MFSD14C', 'score': 12.16}, {'connected_gene': 'LOC441454', 'score': 11.37}, {'connected_gene': 'TSTD2', 'score': 10.74}, {'connected_gene': 'ENSG00000203279', 'score': 5.71}, {'connected_gene': 'FAM220CP', 'score': 5.67}, {'connected_gene': 'VN1R51P', 'score': 3.99}, {'connected_gene': 'LOC286359', 'score': 0.44}, {'connected_gene': 'TDRD7', 'score': 0.44}, {'connected_gene': 'LOC105376167', 'score': 0.44}]
chr9	GH09I097695	97695783	97698568	2	[{'connected_gene': 'XPA', 'score': 561.88}, {'connected_gene': 'KRT18P13', 'score': 559.49}, {'connected_gene': 'ZNF322P1', 'score': 16.08}, {'connected_gene': 'ZNF510', 'score': 14.66}, {'connected_gene': 'NCBP1', 'score': 11.36}, {'connected_gene': 'CCDC180', 'score': 11.04}, {'connected_gene': 'ZNF782', 'score': 9.67}, {'connected_gene': 'TSTD2', 'score': 8.34}, {'connected_gene': 'GC09M097677', 'score': 0.37}]
chr9	GH09I098162	98162319	98165617	0.72	[{'connected_gene': 'CORO2A', 'score': 18.79}, {'connected_gene': 'TBC1D2', 'score': 18.27}, {'connected_gene': 'XPA', 'score': 13.96}, {'connected_gene': 'ZNF322P1', 'score': 12.9}, {'connected_gene': 'TRIM14', 'score': 11.9}, {'connected_gene': 'TSTD2', 'score': 11.72}, {'connected_gene': 'PIR60537', 'score': 0.31}]
chr9	GH09I097703	97703092	97705077	1.06	[{'connected_gene': 'TMOD1', 'score': 10.7}, {'connected_gene': 'FOXE1', 'score': 10.58}, {'connected_gene': 'KRT18P13', 'score': 9.31}, {'connected_gene': 'TRMO', 'score': 7.24}, {'connected_gene': 'TSTD2', 'score': 6.78}, {'connected_gene': 'ENSG00000260677', 'score': 0.28}]
chr9	GH09I098034	98034491	98038000	1.01	[{'connected_gene': 'NANS', 'score': 24.64}, {'connected_gene': 'TRMO', 'score': 17.67}, {'connected_gene': 'ENSG00000236896', 'score': 12.07}, {'connected_gene': 'ANP32B', 'score': 12.06}, {'connected_gene': 'ENSG00000201830', 'score': 11.87}, {'connected_gene': 'TBC1D2', 'score': 10.52}, {'connected_gene': 'TSTD2', 'score': 4.6}, {'connected_gene': 'RNU6-918P', 'score': 0.77}]
chr9	GH09I098055	98055850	98058322	2.22	[{'connected_gene': 'NANS', 'score': 559.6}, {'connected_gene': 'NCBP1', 'score': 14.35}, {'connected_gene': 'TSTD2', 'score': 12.89}, {'connected_gene': 'TRIM14', 'score': 7.01}, {'connected_gene': 'GC09M098254', 'score': 0.31}, {'connected_gene': 'GC09M098251', 'score': 0.31}, {'connected_gene': 'PIR35853', 'score': 0.31}]
chr9	GH09I097918	97918311	97924164	2.6	[{'connected_gene': 'TRMO', 'score': 591.45}, {'connected_gene': 'NCBP1', 'score': 52.35}, {'connected_gene': 'TSTD2', 'score': 39.53}, {'connected_gene': 'ZNF322P1', 'score': 24.45}, {'connected_gene': 'NUTM2G', 'score': 23.16}, {'connected_gene': 'MFSD14C', 'score': 22.18}, {'connected_gene': 'ZNF782', 'score': 21.82}, {'connected_gene': 'ANP32B', 'score': 12.67}, {'connected_gene': 'ENSG00000236896', 'score': 12.67}, {'connected_gene': 'HEMGN', 'score': 12.64}, {'connected_gene': 'RNU6-918P', 'score': 12.0}, {'connected_gene': 'ENSG00000254633', 'score': 12.0}, {'connected_gene': 'XPA', 'score': 11.72}, {'connected_gene': 'TRIM14', 'score': 1.76}, {'connected_gene': 'ENSG00000201830', 'score': 0.44}]
chr9	GH09I097631	97631431	97635396	2.29	[{'connected_gene': 'NCBP1', 'score': 582.53}, {'connected_gene': 'TSTD2', 'score': 567.37}, {'connected_gene': 'MFSD14C', 'score': 22.19}, {'connected_gene': 'ZNF782', 'score': 21.82}, {'connected_gene': 'NUTM2G', 'score': 20.22}, {'connected_gene': 'ZNF322P1', 'score': 13.57}, {'connected_gene': 'ENSG00000224848', 'score': 12.63}, {'connected_gene': 'ZNF510', 'score': 12.18}, {'connected_gene': 'ENSG00000254633', 'score': 12.02}, {'connected_gene': 'XPA', 'score': 10.96}, {'connected_gene': 'LOC105376171', 'score': 10.79}, {'connected_gene': 'TDRD7', 'score': 10.74}, {'connected_gene': 'LOC441454', 'score': 10.57}, {'connected_gene': 'TMOD1', 'score': 9.21}, {'connected_gene': 'PIR37261', 'score': 0.31}, {'connected_gene': 'GC09P097607', 'score': 0.31}]
chr9	GH09I097597	97597891	97600068	0.97	[{'connected_gene': 'KRT18P13', 'score': 9.08}, {'connected_gene': 'TSTD2', 'score': 7.33}, {'connected_gene': 'PIR41890', 'score': 0.77}, {'connected_gene': 'PIR34153', 'score': 0.44}, {'connected_gene': 'TMOD1', 'score': 0.15}]
chr9	GH09I097710	97710319	97711448	0.7	[{'connected_gene': 'KRT18P13', 'score': 11.15}, {'connected_gene': 'TSTD2', 'score': 8.56}, {'connected_gene': 'ENSG00000260677', 'score': 0.29}, {'connected_gene': 'PTCSC2', 'score': 0.11}]
chr9	GH09I096853	96853259	96855168	1.49	[{'connected_gene': 'ERCC6L2', 'score': 18.89}, {'connected_gene': 'EIF4BP3', 'score': 11.96}, {'connected_gene': 'TSTD2', 'score': 10.26}, {'connected_gene': 'NUTM2G', 'score': 6.35}, {'connected_gene': 'LOC100132781', 'score': 0.39}, {'connected_gene': 'ZNF510', 'score': 0.18}, {'connected_gene': 'ZNF782', 'score': 0.1}]
chr9	GH09I097615	97615599	97615768	0.62	[{'connected_gene': 'TDRD7', 'score': 11.2}, {'connected_gene': 'LOC105376168', 'score': 10.95}, {'connected_gene': 'PIR37261', 'score': 0.44}, {'connected_gene': 'GC09P097607', 'score': 0.44}, {'connected_gene': 'TSTD2', 'score': 0.37}, {'connected_gene': 'NCBP1', 'score': 0.37}]
chr9	GH09I097757	97757887	97762132	0.86	[{'connected_gene': 'FOXE1', 'score': 10.19}, {'connected_gene': 'TRMO', 'score': 9.03}, {'connected_gene': 'KRT18P13', 'score': 5.48}, {'connected_gene': 'TSTD2', 'score': 4.17}, {'connected_gene': 'ENSG00000260677', 'score': 0.37}, {'connected_gene': 'PTCSC2', 'score': 0.16}]
chr9	GH09I097692	97692411	97692571	0.33	[{'connected_gene': 'FOXE1', 'score': 9.99}, {'connected_gene': 'TSTD2', 'score': 2.44}, {'connected_gene': 'XPA', 'score': 1.92}, {'connected_gene': 'GC09M097677', 'score': 0.39}]
chr9	GH09I097747	97747158	97748540	0.2	[{'connected_gene': 'FOXE1', 'score': 10.6}, {'connected_gene': 'TSTD2', 'score': 4.34}, {'connected_gene': 'ENSG00000260677', 'score': 0.77}, {'connected_gene': 'PTCSC2', 'score': 0.14}]
chr9	GH09I097750	97750048	97752847	0.46	[{'connected_gene': 'FOXE1', 'score': 10.7}, {'connected_gene': 'TSTD2', 'score': 4.24}, {'connected_gene': 'ENSG00000260677', 'score': 0.44}, {'connected_gene': 'PTCSC2', 'score': 0.15}]
chr9	GH09I097510	97510253	97512303	1.34	[{'connected_gene': 'ZNF510', 'score': 39.12}, {'connected_gene': 'ENSG00000224848', 'score': 34.09}, {'connected_gene': 'ZNF322P1', 'score': 32.05}, {'connected_gene': 'NCBP1', 'score': 31.36}, {'connected_gene': 'XPA', 'score': 28.62}, {'connected_gene': 'TSTD2', 'score': 26.74}, {'connected_gene': 'LOC105376168', 'score': 23.41}, {'connected_gene': 'LOC105376171', 'score': 19.05}, {'connected_gene': 'ZNF782', 'score': 14.1}, {'connected_gene': 'LOC441455', 'score': 11.82}, {'connected_gene': 'CCDC180', 'score': 10.66}, {'connected_gene': 'LOC441454', 'score': 10.58}, {'connected_gene': 'TMOD1', 'score': 0.39}]
chr9	GH09I097979	97979663	97987948	2.52	[{'connected_gene': 'ANP32B', 'score': 550.77}, {'connected_gene': 'NANS', 'score': 26.5}, {'connected_gene': 'NCBP1', 'score': 23.23}, {'connected_gene': 'MFSD14C', 'score': 22.18}, {'connected_gene': 'ZNF782', 'score': 21.82}, {'connected_gene': 'TSTD2', 'score': 16.66}, {'connected_gene': 'ZNF322P1', 'score': 13.55}, {'connected_gene': 'ENSG00000254633', 'score': 12.0}, {'connected_gene': 'XPA', 'score': 10.81}, {'connected_gene': 'TRMO', 'score': 6.22}, {'connected_gene': 'TRIM14', 'score': 4.69}, {'connected_gene': 'ENSG00000236896', 'score': 0.77}]
chr9	GH09I098221	98221005	98235773	1.72	[{'connected_gene': 'MIR6854', 'score': 550.77}, {'connected_gene': 'TBC1D2', 'score': 45.45}, {'connected_gene': 'CORO2A', 'score': 17.67}, {'connected_gene': 'NCBP1', 'score': 14.33}, {'connected_gene': 'TSTD2', 'score': 12.87}, {'connected_gene': 'TRIM14', 'score': 10.78}, {'connected_gene': 'ENSG00000236896', 'score': 10.71}, {'connected_gene': 'LOC100131625', 'score': 0.44}]
chr9	GH09I097856	97853515	97853574	0.82	[{'connected_gene': 'PTCSC2', 'score': 550.77}, {'connected_gene': 'FOXE1', 'score': 550.77}, {'connected_gene': 'ZNF782', 'score': 18.98}, {'connected_gene': 'NCBP1', 'score': 18.01}, {'connected_gene': 'LOC441454', 'score': 13.44}, {'connected_gene': 'TSTD2', 'score': 12.86}, {'connected_gene': 'MFSD14C', 'score': 12.05}, {'connected_gene': 'ZNF322P1', 'score': 10.46}, {'connected_gene': 'GC09P097870', 'score': 0.37}]
chr9	GH09I097600	97600656	97602520	0.2	[{'connected_gene': 'PIR46089', 'score': 550.77}, {'connected_gene': 'PIR42915', 'score': 550.77}, {'connected_gene': 'PIR34918', 'score': 550.77}, {'connected_gene': 'GC09M097606', 'score': 550.77}, {'connected_gene': 'PIR41890', 'score': 550.77}, {'connected_gene': 'GAS2L1P2', 'score': 4.08}, {'connected_gene': 'TSTD2', 'score': 0.29}, {'connected_gene': 'TMOD1', 'score': 0.15}]
chr9	GH09I097670	97670481	97670807	0.22	[{'connected_gene': 'PIR56620', 'score': 550.77}, {'connected_gene': 'PIR42148', 'score': 550.77}, {'connected_gene': 'TSTD2', 'score': 1.81}, {'connected_gene': 'XPA', 'score': 1.73}, {'connected_gene': 'LOC105376171', 'score': 0.29}, {'connected_gene': 'NCBP1', 'score': 0.28}]
chr9	GH09I097988	97988841	97989409	0.38	[{'connected_gene': 'ENSG00000236896', 'score': 550.77}, {'connected_gene': 'TSTD2', 'score': 5.04}, {'connected_gene': 'ANP32B', 'score': 0.44}, {'connected_gene': 'GC09P098033', 'score': 0.26}]
chr9	GH09I097231	97231950	97233090	0.95	[{'connected_gene': 'ENSG00000235494', 'score': 558.53}, {'connected_gene': 'VN1R51P', 'score': 32.68}, {'connected_gene': 'CCDC180', 'score': 26.45}, {'connected_gene': 'TSTD2', 'score': 16.65}, {'connected_gene': 'ZNF322P1', 'score': 13.82}, {'connected_gene': 'ZNF782', 'score': 13.74}, {'connected_gene': 'NCBP1', 'score': 12.67}, {'connected_gene': 'ENSG00000254633', 'score': 12.23}, {'connected_gene': 'MFSD14C', 'score': 10.96}, {'connected_gene': 'XPA', 'score': 10.79}, {'connected_gene': 'LOC441454', 'score': 10.6}, {'connected_gene': 'LOC100421693', 'score': 9.96}, {'connected_gene': 'GAS2L1P2', 'score': 4.14}, {'connected_gene': 'ENSG00000203279', 'score': 0.44}, {'connected_gene': 'ANKRD18CP', 'score': 0.39}]