PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000380881	[[14734663, 14737593], [14740146, 14740232], [14746350, 14746466], [14746920, 14747049], [14747261, 14747426], [14747678, 14747726], [14748398, 14748637], [14750124, 14750274], [14756371, 14756444], [14759769, 14759899], [14769721, 14769866], [14770602, 14770804], [14775786, 14776201], [14784367, 14784632], [14788916, 14789112], [14792740, 14792882], [14797495, 14797640], [14801649, 14801872], [14804953, 14805150], [14806658, 14806844], [14807937, 14808132], [14812809, 14813062], [14816775, 14816869], [14819231, 14819440], [14823157, 14823325], [14824022, 14824113], [14824793, 14824990], [14841444, 14841587], [14842313, 14842658], [14845957, 14846089], [14848662, 14848771], [14851281, 14851608], [14857550, 14857747], [14859180, 14859482], [14863806, 14863901], [14868741, 14869242], [14909911, 14910234], [14910767, 14910993]]	[[14737393, 14737593], [14740146, 14740232], [14746350, 14746466], [14746920, 14747049], [14747261, 14747426], [14747678, 14747726], [14748398, 14748637], [14750124, 14750274], [14756371, 14756444], [14759769, 14759899], [14769721, 14769866], [14770602, 14770804], [14775786, 14776201], [14784367, 14784632], [14788916, 14789112], [14792740, 14792882], [14797495, 14797640], [14801649, 14801872], [14804953, 14805150], [14806658, 14806844], [14807937, 14808132], [14812809, 14813062], [14816775, 14816869], [14819231, 14819440], [14823157, 14823325], [14824022, 14824113], [14824793, 14824990], [14841444, 14841587], [14842313, 14842658], [14845957, 14846089], [14848662, 14848771], [14851281, 14851608], [14857550, 14857747], [14859180, 14859482], [14863806, 14863901], [14868741, 14868975]]
ENST00000422223	[[14734663, 14737593], [14740146, 14740232], [14746350, 14746466], [14746920, 14747049], [14747261, 14747426], [14747678, 14747726], [14748398, 14748637], [14750124, 14750274], [14756371, 14756444], [14759769, 14759899], [14769721, 14769866], [14770602, 14770804], [14775786, 14776201], [14784367, 14784632], [14788916, 14789112], [14792740, 14792882], [14797495, 14797640], [14801649, 14801872], [14804953, 14805150], [14806658, 14806844], [14807937, 14808132], [14812809, 14813062], [14816775, 14816869], [14819231, 14819440], [14823157, 14823325], [14824022, 14824113], [14824793, 14824990], [14841444, 14841587], [14842313, 14842658], [14845957, 14846089], [14848662, 14848771], [14851281, 14851605], [14857550, 14857747], [14859180, 14859482], [14863806, 14863901], [14868741, 14869242], [14909911, 14910234], [14910767, 14910993]]	[[14737393, 14737593], [14740146, 14740232], [14746350, 14746466], [14746920, 14747049], [14747261, 14747426], [14747678, 14747726], [14748398, 14748637], [14750124, 14750274], [14756371, 14756444], [14759769, 14759899], [14769721, 14769866], [14770602, 14770804], [14775786, 14776201], [14784367, 14784632], [14788916, 14789112], [14792740, 14792882], [14797495, 14797640], [14801649, 14801872], [14804953, 14805150], [14806658, 14806844], [14807937, 14808132], [14812809, 14813062], [14816775, 14816869], [14819231, 14819440], [14823157, 14823325], [14824022, 14824113], [14824793, 14824990], [14841444, 14841587], [14842313, 14842658], [14845957, 14846089], [14848662, 14848771], [14851281, 14851605], [14857550, 14857747], [14859180, 14859482], [14863806, 14863901], [14868741, 14868975]]
ENST00000380875	[[14737197, 14737593], [14740146, 14740232], [14746350, 14746466], [14746920, 14747049], [14747261, 14747426], [14747678, 14747726], [14748398, 14748637], [14750124, 14750274], [14792740, 14792882], [14797495, 14797640], [14801649, 14801872], [14804953, 14805150], [14806658, 14806844], [14807937, 14808132], [14812809, 14813062], [14816775, 14816869], [14819231, 14819440], [14823157, 14823325], [14824022, 14824113], [14824793, 14824990], [14841444, 14841587], [14842313, 14842658], [14845957, 14846089], [14848662, 14848771], [14851281, 14851605], [14857550, 14857747], [14859180, 14859482], [14863806, 14863901], [14868741, 14869242], [14909911, 14910234], [14910767, 14910993]]	[[14750247, 14750274], [14792740, 14792882], [14797495, 14797640], [14801649, 14801872], [14804953, 14805150], [14806658, 14806844], [14807937, 14808132], [14812809, 14813062], [14816775, 14816869], [14819231, 14819440], [14823157, 14823325], [14824022, 14824113], [14824793, 14824990], [14841444, 14841587], [14842313, 14842658], [14845957, 14846089], [14848662, 14848771], [14851281, 14851605], [14857550, 14857747], [14859180, 14859482], [14863806, 14863901], [14868741, 14868975]]
ENST00000380880	[[14737393, 14737593], [14740146, 14740232], [14746350, 14746466], [14746920, 14747049], [14747261, 14747426], [14747678, 14747726], [14748398, 14748637], [14750124, 14750274], [14756371, 14756444], [14759769, 14759899], [14769721, 14769866], [14770602, 14770804], [14775786, 14776201], [14784367, 14784632], [14788916, 14789112], [14792740, 14792882], [14797495, 14797640], [14801649, 14801872], [14804953, 14805150], [14806658, 14806844], [14807937, 14808132], [14812809, 14813062], [14816775, 14816869], [14819231, 14819440], [14823157, 14823325], [14824022, 14824113], [14824793, 14824990], [14841444, 14841587], [14842313, 14842658], [14845957, 14846089], [14848662, 14848771], [14851281, 14851605], [14857550, 14857747], [14859180, 14859482], [14863806, 14863901], [14868741, 14869242], [14909911, 14910428]]	[[14737393, 14737593], [14740146, 14740232], [14746350, 14746466], [14746920, 14747049], [14747261, 14747426], [14747678, 14747726], [14748398, 14748637], [14750124, 14750274], [14756371, 14756444], [14759769, 14759899], [14769721, 14769866], [14770602, 14770804], [14775786, 14776201], [14784367, 14784632], [14788916, 14789112], [14792740, 14792882], [14797495, 14797640], [14801649, 14801872], [14804953, 14805150], [14806658, 14806844], [14807937, 14808132], [14812809, 14813062], [14816775, 14816869], [14819231, 14819440], [14823157, 14823325], [14824022, 14824113], [14824793, 14824990], [14841444, 14841587], [14842313, 14842658], [14845957, 14846089], [14848662, 14848771], [14851281, 14851605], [14857550, 14857747], [14859180, 14859482], [14863806, 14863901], [14868741, 14868975]]
ENST00000380894	[[14737149, 14737593], [14740146, 14740232], [14746350, 14746466], [14746920, 14747049], [14747261, 14747426], [14747678, 14747726], [14748398, 14748637], [14750124, 14750274], [14756371, 14756444], [14759769, 14759899], [14769721, 14769866], [14770602, 14770804], [14775786, 14776254], [14779445, 14779531]]	[[14737393, 14737593], [14740146, 14740232], [14746350, 14746466], [14746920, 14747049], [14747261, 14747426], [14747678, 14747726], [14748398, 14748637], [14750124, 14750274], [14756371, 14756444], [14759769, 14759899], [14769721, 14769866], [14770602, 14770804], [14775786, 14776251]]
ENST00000427623	[[14737363, 14737593], [14740146, 14740232], [14746350, 14746466], [14746920, 14747049], [14747261, 14747426], [14747678, 14747726], [14756371, 14756444], [14759769, 14759899], [14769721, 14769866], [14770602, 14770804], [14774062, 14774159]]	[[14747703, 14747726], [14756371, 14756444], [14759769, 14759899], [14769721, 14769866], [14770602, 14770804]]
ENST00000486223	[[14751702, 14751850], [14756371, 14756444], [14759769, 14759899], [14769721, 14769866], [14770602, 14770804], [14775786, 14775903]]	None
ENST00000485068	[[14775820, 14776254], [14784367, 14784632]]	None
ENST00000466679	[[14775932, 14776201], [14784367, 14784632], [14788916, 14789064], [14792740, 14792799]]	None
ENST00000497634	[[14784269, 14784632], [14788916, 14789112], [14792740, 14792882]]	None
NM_144966	[[14734663, 14737593], [14740146, 14740232], [14746350, 14746466], [14746920, 14747049], [14747261, 14747426], [14747678, 14747726], [14748398, 14748637], [14750124, 14750274], [14756371, 14756444], [14759769, 14759899], [14769721, 14769866], [14770602, 14770804], [14775786, 14776201], [14784367, 14784632], [14788916, 14789112], [14792740, 14792882], [14797495, 14797640], [14801649, 14801872], [14804953, 14805150], [14806658, 14806844], [14807937, 14808132], [14812809, 14813062], [14816775, 14816869], [14819231, 14819440], [14823157, 14823325], [14824022, 14824113], [14824793, 14824990], [14841444, 14841587], [14842313, 14842658], [14845957, 14846089], [14848662, 14848771], [14851281, 14851605], [14857550, 14857747], [14859180, 14859482], [14863806, 14863901], [14868741, 14869242], [14909911, 14910234], [14910767, 14910993]]	[[14737393, 14737593], [14740146, 14740232], [14746350, 14746466], [14746920, 14747049], [14747261, 14747426], [14747678, 14747726], [14748398, 14748637], [14750124, 14750274], [14756371, 14756444], [14759769, 14759899], [14769721, 14769866], [14770602, 14770804], [14775786, 14776201], [14784367, 14784632], [14788916, 14789112], [14792740, 14792882], [14797495, 14797640], [14801649, 14801872], [14804953, 14805150], [14806658, 14806844], [14807937, 14808132], [14812809, 14813062], [14816775, 14816869], [14819231, 14819440], [14823157, 14823325], [14824022, 14824113], [14824793, 14824990], [14841444, 14841587], [14842313, 14842658], [14845957, 14846089], [14848662, 14848771], [14851281, 14851605], [14857550, 14857747], [14859180, 14859482], [14863806, 14863901], [14868741, 14868975]]
NM_001177704	[[14734663, 14737593], [14740146, 14740232], [14746350, 14746466], [14746920, 14747049], [14747261, 14747426], [14747678, 14747726], [14748398, 14748637], [14750124, 14750274], [14756371, 14756444], [14759769, 14759899], [14769721, 14769866], [14770602, 14770804], [14775786, 14776254], [14779445, 14779531]]	[[14737393, 14737593], [14740146, 14740232], [14746350, 14746466], [14746920, 14747049], [14747261, 14747426], [14747678, 14747726], [14748398, 14748637], [14750124, 14750274], [14756371, 14756444], [14759769, 14759899], [14769721, 14769866], [14770602, 14770804], [14775786, 14776251]]

Promoter

Chrom	Start	End	Description
chr9	14868857	14868868	CAGE_peak_15_at_FREM1_5end
chr9	14868978	14869003	CAGE_peak_7_at_FREM1_5end
chr9	14869009	14869025	CAGE_peak_8_at_FREM1_5end
chr9	14869205	14869217	CAGE_peak_17_at_FREM1_5end
chr9	14869264	14869271	CAGE_peak_27_at_FREM1_5end
chr9	14909966	14909990	CAGE_peak_1_at_FREM1_5end
chr9	14909994	14910006	CAGE_peak_6_at_FREM1_5end
chr9	14910193	14910208	CAGE_peak_4_at_FREM1_5end
chr9	14910219	14910242	CAGE_peak_5_at_FREM1_5end
chr9	14910246	14910280	CAGE_peak_3_at_FREM1_5end
chr9	14910342	14910355	CAGE_peak_12_at_FREM1_5end
chr9	14910387	14910398	CAGE_peak_10_at_FREM1_5end
chr9	14910411	14910418	CAGE_peak_14_at_FREM1_5end
chr9	14910420	14910434	CAGE_peak_2_at_FREM1_5end
chr9	14910449	14910466	CAGE_peak_9_at_FREM1_5end
chr9	14910480	14910497	CAGE_peak_11_at_FREM1_5end
chr9	14910922	14910928	CAGE_peak_24_at_FREM1_5end
chr9	14910957	14910964	CAGE_peak_23_at_FREM1_5end
chr9	14910990	14910995	CAGE_peak_25_at_FREM1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I014814	14813465	14813791	0.22	[{'connected_gene': 'NFIB', 'score': 1.25}, {'connected_gene': 'LOC105375979', 'score': 0.29}, {'connected_gene': 'GC09P014850', 'score': 0.28}, {'connected_gene': 'FREM1', 'score': 0.15}]
chr9	GH09I014980	14980693	14982711	0.2	[{'connected_gene': 'LOC389705', 'score': 19.01}, {'connected_gene': 'FREM1', 'score': 7.46}, {'connected_gene': 'LOC105375980', 'score': 0.39}, {'connected_gene': 'GC09M014955', 'score': 0.31}, {'connected_gene': 'GC09M014956', 'score': 0.31}, {'connected_gene': 'PIR32025', 'score': 0.31}, {'connected_gene': 'GC09M014957', 'score': 0.31}]
chr9	GH09I014749	14749646	14753043	0.31	[{'connected_gene': 'ZDHHC21', 'score': 15.94}, {'connected_gene': 'CER1', 'score': 11.07}, {'connected_gene': 'LOC105375979', 'score': 0.31}, {'connected_gene': 'FREM1', 'score': 0.1}]
chr9	GH09I014768	14768401	14768853	0.76	[{'connected_gene': 'ZDHHC21', 'score': 10.93}, {'connected_gene': 'RNU6-1260P', 'score': 10.48}, {'connected_gene': 'LOC105375979', 'score': 0.39}, {'connected_gene': 'CER1', 'score': 0.25}, {'connected_gene': 'FREM1', 'score': 0.11}]
chr9	GH09I014745	14745670	14747901	0.38	[{'connected_gene': 'CER1', 'score': 19.54}, {'connected_gene': 'ZDHHC21', 'score': 7.08}, {'connected_gene': 'ENSG00000272871', 'score': 4.97}, {'connected_gene': 'LOC105375979', 'score': 0.29}, {'connected_gene': 'FREM1', 'score': 0.1}]
chr9	GH09I014934	14934625	14937221	0.56	[{'connected_gene': 'FREM1', 'score': 15.79}, {'connected_gene': 'LOC389705', 'score': 12.09}, {'connected_gene': 'LDHAP4', 'score': 0.39}, {'connected_gene': 'GC09M014955', 'score': 0.37}, {'connected_gene': 'GC09M014956', 'score': 0.37}, {'connected_gene': 'PIR32025', 'score': 0.37}, {'connected_gene': 'GC09M014957', 'score': 0.37}]
chr9	GH09I014868	14868816	14869522	0.88	[{'connected_gene': 'FREM1', 'score': 6.5}, {'connected_gene': 'ZDHHC21', 'score': 4.84}, {'connected_gene': 'RNU6-1260P', 'score': 0.37}]
chr9	GH09I015085	15085434	15087596	0.46	[{'connected_gene': 'FREM1', 'score': 9.94}, {'connected_gene': 'TTC39B', 'score': 5.07}, {'connected_gene': 'PSIP1P1', 'score': 0.29}, {'connected_gene': 'RNU6-559P', 'score': 0.22}, {'connected_gene': 'CLCN3P1', 'score': 0.22}]
chr9	GH09I014906	14906075	14911426	2.09	[{'connected_gene': 'FREM1', 'score': 550.77}, {'connected_gene': 'RNU6-1260P', 'score': 10.9}, {'connected_gene': 'LOC389705', 'score': 9.42}]
chr9	GH09I014888	14888203	14888715	0.43	[{'connected_gene': 'FREM1', 'score': 18.11}, {'connected_gene': 'RNU6-1260P', 'score': 11.25}]
chr9	GH09I014846	14846883	14847032	0.56	[{'connected_gene': 'FREM1', 'score': 5.97}, {'connected_gene': 'GC09P014850', 'score': 0.77}, {'connected_gene': 'LOC105375979', 'score': 0.2}]
chr9	GH09I015146	15146903	15147028	0.33	[{'connected_gene': 'LOC105375981', 'score': 550.77}, {'connected_gene': 'CLCN3P1', 'score': 550.77}, {'connected_gene': 'PSIP1', 'score': 1.25}, {'connected_gene': 'FREM1', 'score': 1.16}]
chr9	GH09I014778	14778864	14781029	1.1	[{'connected_gene': 'LOC105375979', 'score': 550.77}, {'connected_gene': 'FREM1', 'score': 550.12}, {'connected_gene': 'GC09P014850', 'score': 0.19}]
chr9	GH09I014813	14813801	14814000	0.2	[{'connected_gene': 'LOC105375979', 'score': 0.29}, {'connected_gene': 'GC09P014850', 'score': 0.28}, {'connected_gene': 'FREM1', 'score': 0.15}]