PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000240285	[[74206846, 74207813], [74209428, 74209664], [74231330, 74231429], [74233166, 74233312], [74234913, 74235045], [74235147, 74237516]]	[[74207524, 74207813], [74209428, 74209664], [74231330, 74231429], [74233166, 74233312], [74234913, 74235045], [74235147, 74235271]]
ENST00000518870	[[74207750, 74207813], [74209428, 74209975]]	None
ENST00000521928	[[74208073, 74208117], [74209428, 74209664], [74231330, 74231429], [74233166, 74233223]]	[[74209634, 74209664], [74231330, 74231429], [74233166, 74233223]]
ENST00000519380	[[74209250, 74209664], [74231330, 74231429], [74233166, 74233312], [74234913, 74235045], [74235147, 74235334]]	[[74209634, 74209664], [74231330, 74231429], [74233166, 74233312], [74234913, 74235045], [74235147, 74235271]]
ENST00000521013	[[74234074, 74235045], [74235147, 74235543]]	None
NM_172037	[[74206836, 74207813], [74209428, 74209664], [74231330, 74231429], [74233166, 74233312], [74234913, 74235045], [74235147, 74237520]]	[[74207524, 74207813], [74209428, 74209664], [74231330, 74231429], [74233166, 74233312], [74234913, 74235045], [74235147, 74235271]]

Promoter

Chrom	Start	End	Description
chr8	74206513	74206529	CAGE_peak_4_at_RDH10_5end
chr8	74206784	74206821	CAGE_peak_2_at_RDH10_5end
chr8	74206829	74206846	CAGE_peak_1_at_RDH10_5end
chr8	74206886	74206890	CAGE_peak_14_at_RDH10_5end
chr8	74207362	74207385	CAGE_peak_8_at_RDH10_5end
chr8	74207392	74207440	CAGE_peak_5_at_RDH10_5end
chr8	74209403	74209419	CAGE_peak_16_at_RDH10_5end
chr8	74209501	74209514	CAGE_peak_11_at_RDH10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I073291	73291981	73297545	2.27	[{'connected_gene': 'RPL7', 'score': 565.54}, {'connected_gene': 'RDH10', 'score': 550.77}, {'connected_gene': 'RDH10-AS1', 'score': 10.29}]
chr8	GH08I073745	73745098	73748266	2.04	[{'connected_gene': 'STAU2', 'score': 550.77}, {'connected_gene': 'RDH10', 'score': 9.84}, {'connected_gene': 'GC08M073613', 'score': 0.37}, {'connected_gene': 'ENSG00000254538', 'score': 0.18}, {'connected_gene': 'ENSG00000258677', 'score': 0.12}]
chr8	GH08I073630	73630154	73633832	0.69	[{'connected_gene': 'RDH10', 'score': 19.47}, {'connected_gene': 'RPL7', 'score': 9.76}, {'connected_gene': 'VENTXP6', 'score': 0.37}, {'connected_gene': 'ENSG00000253383', 'score': 0.26}, {'connected_gene': 'STAU2', 'score': 0.13}, {'connected_gene': 'GC08M073613', 'score': 0.12}]
chr8	GH08I073504	73504401	73504800	1.04	[{'connected_gene': 'RDH10', 'score': 10.37}, {'connected_gene': 'RPL7', 'score': 10.37}, {'connected_gene': 'ENSG00000254273', 'score': 0.44}, {'connected_gene': 'GC08M073453', 'score': 0.26}, {'connected_gene': 'STAU2', 'score': 0.07}]
chr8	GH08I073340	73340635	73341835	0.98	[{'connected_gene': 'RDH10', 'score': 10.69}, {'connected_gene': 'RPL7', 'score': 10.69}, {'connected_gene': 'RDH10-AS1', 'score': 0.37}, {'connected_gene': 'GC08P073298', 'score': 0.26}]
chr8	GH08I073611	73611756	73613805	0.6	[{'connected_gene': 'RDH10', 'score': 9.79}, {'connected_gene': 'ENSG00000253383', 'score': 0.34}, {'connected_gene': 'VENTXP6', 'score': 0.28}, {'connected_gene': 'STAU2', 'score': 0.12}, {'connected_gene': 'GC08M073613', 'score': 0.11}]
chr8	GH08I073603	73603088	73603929	0.38	[{'connected_gene': 'RDH10', 'score': 7.65}, {'connected_gene': 'ENSG00000253383', 'score': 0.39}, {'connected_gene': 'VENTXP6', 'score': 0.25}, {'connected_gene': 'STAU2', 'score': 0.11}]
chr8	GH08I073585	73585139	73586895	0.4	[{'connected_gene': 'RDH10', 'score': 7.83}, {'connected_gene': 'ENSG00000253383', 'score': 0.77}, {'connected_gene': 'ENSG00000254273', 'score': 0.19}, {'connected_gene': 'STAU2', 'score': 0.1}]
chr8	GH08I073470	73470694	73471387	0.2	[{'connected_gene': 'RDH10', 'score': 4.69}, {'connected_gene': 'GC08M073453', 'score': 0.39}, {'connected_gene': 'ENSG00000254273', 'score': 0.26}, {'connected_gene': 'STAU2', 'score': 0.06}]
chr8	GH08I073490	73490891	73491678	0.67	[{'connected_gene': 'RDH10', 'score': 6.14}, {'connected_gene': 'ENSG00000254273', 'score': 0.34}, {'connected_gene': 'GC08M073453', 'score': 0.29}, {'connected_gene': 'STAU2', 'score': 0.07}]
chr8	GH08I073489	73489193	73490840	0.86	[{'connected_gene': 'RDH10', 'score': 6.14}, {'connected_gene': 'ENSG00000254273', 'score': 0.34}, {'connected_gene': 'GC08M073453', 'score': 0.31}, {'connected_gene': 'STAU2', 'score': 0.07}]
chr8	GH08I073482	73482462	73482572	0.2	[{'connected_gene': 'RDH10', 'score': 6.11}, {'connected_gene': 'GC08M073453', 'score': 0.34}, {'connected_gene': 'ENSG00000254273', 'score': 0.31}, {'connected_gene': 'STAU2', 'score': 0.06}]
chr8	GH08I073519	73519646	73521915	1.35	[{'connected_gene': 'RDH10', 'score': 9.97}, {'connected_gene': 'SBSPON', 'score': 1.5}, {'connected_gene': 'ENSG00000254273', 'score': 0.44}, {'connected_gene': 'ENSG00000253383', 'score': 0.2}, {'connected_gene': 'STAU2', 'score': 0.07}]
chr8	GH08I073315	73315566	73315735	0.66	[{'connected_gene': 'RDH10', 'score': 11.72}, {'connected_gene': 'ENSG00000253339', 'score': 11.22}, {'connected_gene': 'RDH10-AS1', 'score': 11.22}, {'connected_gene': 'GC08P073298', 'score': 0.37}]
chr8	GH08I073450	73450361	73452619	0.92	[{'connected_gene': 'RDH10', 'score': 5.33}, {'connected_gene': 'GC08M073453', 'score': 0.44}, {'connected_gene': 'STAU2-AS1', 'score': 0.29}, {'connected_gene': 'STAU2', 'score': 0.06}]
chr8	GH08I072994	72994066	72994295	0.38	[{'connected_gene': 'RNU6-285P', 'score': 12.06}, {'connected_gene': 'RDH10', 'score': 9.51}, {'connected_gene': 'RPL7', 'score': 9.51}, {'connected_gene': 'TERF1', 'score': 0.39}, {'connected_gene': 'ENSG00000260838', 'score': 0.25}]
chr8	GH08I073363	73363933	73365041	1.14	[{'connected_gene': 'LOC105375899', 'score': 6.36}, {'connected_gene': 'RDH10', 'score': 5.61}, {'connected_gene': 'SBSPON', 'score': 1.59}, {'connected_gene': 'ENSG00000253339', 'score': 0.44}]
chr8	GH08I073316	73316256	73319552	0.73	[{'connected_gene': 'RDH10-AS1', 'score': 19.57}, {'connected_gene': 'RDH10', 'score': 11.72}, {'connected_gene': 'RPL7', 'score': 11.72}, {'connected_gene': 'ENSG00000253339', 'score': 11.22}, {'connected_gene': 'GC08P073298', 'score': 0.37}]
chr8	GH08I073326	73326981	73327970	0.86	[{'connected_gene': 'RDH10-AS1', 'score': 12.57}, {'connected_gene': 'ENSG00000253339', 'score': 12.56}, {'connected_gene': 'RDH10', 'score': 11.48}, {'connected_gene': 'RPL7', 'score': 11.48}, {'connected_gene': 'GC08P073298', 'score': 0.31}]
chr8	GH08I073320	73320653	73322541	0.38	[{'connected_gene': 'RDH10-AS1', 'score': 23.77}, {'connected_gene': 'ENSG00000253339', 'score': 12.54}, {'connected_gene': 'RDH10', 'score': 11.5}, {'connected_gene': 'RPL7', 'score': 11.5}, {'connected_gene': 'GC08P073298', 'score': 0.34}]
chr8	GH08I073313	73313757	73315530	0.84	[{'connected_gene': 'RDH10-AS1', 'score': 21.89}, {'connected_gene': 'RDH10', 'score': 11.72}, {'connected_gene': 'ENSG00000253339', 'score': 11.22}, {'connected_gene': 'GC08P073298', 'score': 0.37}]
chr8	GH08I073306	73306192	73308375	0.92	[{'connected_gene': 'RDH10-AS1', 'score': 19.71}, {'connected_gene': 'ENSG00000253339', 'score': 10.69}, {'connected_gene': 'GC08P073298', 'score': 0.44}, {'connected_gene': 'RDH10', 'score': 0.39}]
chr8	GH08I073311	73311250	73313116	1.36	[{'connected_gene': 'RDH10-AS1', 'score': 18.86}, {'connected_gene': 'ENSG00000253339', 'score': 10.44}, {'connected_gene': 'GC08P073298', 'score': 0.39}, {'connected_gene': 'RDH10', 'score': 0.37}]
chr8	GH08I073301	73301591	73303150	0.31	[{'connected_gene': 'RDH10-AS1', 'score': 20.58}, {'connected_gene': 'ENSG00000253339', 'score': 10.61}, {'connected_gene': 'GC08P073298', 'score': 0.77}, {'connected_gene': 'RDH10', 'score': 0.44}]
chr8	GH08I073305	73305626	73305775	0.82	[{'connected_gene': 'RDH10-AS1', 'score': 19.03}, {'connected_gene': 'ENSG00000253339', 'score': 10.62}, {'connected_gene': 'GC08P073298', 'score': 0.44}, {'connected_gene': 'RDH10', 'score': 0.39}]
chr8	GH08I073300	73300014	73300981	0.43	[{'connected_gene': 'RDH10-AS1', 'score': 21.6}, {'connected_gene': 'ENSG00000253339', 'score': 10.61}, {'connected_gene': 'GC08P073298', 'score': 0.77}, {'connected_gene': 'RDH10', 'score': 0.44}]
chr8	GH08I073285	73285826	73286200	0.58	[{'connected_gene': 'C8orf89', 'score': 550.77}, {'connected_gene': 'RPL7', 'score': 10.71}, {'connected_gene': 'RDH10-AS1', 'score': 9.82}, {'connected_gene': 'RDH10', 'score': 0.44}]
chr8	GH08I073458	73458191	73462146	1.31	[{'connected_gene': 'GC08M073453', 'score': 550.77}, {'connected_gene': 'RDH10', 'score': 5.98}, {'connected_gene': 'JPH1', 'score': 4.76}, {'connected_gene': 'STAU2-AS1', 'score': 0.26}, {'connected_gene': 'STAU2', 'score': 0.06}]
chr8	GH08I073587	73587939	73589307	0.58	[{'connected_gene': 'ENSG00000253383', 'score': 550.77}, {'connected_gene': 'RDH10', 'score': 7.65}, {'connected_gene': 'ENSG00000254273', 'score': 0.18}, {'connected_gene': 'STAU2', 'score': 0.1}]
chr8	GH08I073309	73309726	73309875	0.63	[{'connected_gene': 'GC08P073298', 'score': 0.39}, {'connected_gene': 'RDH10', 'score': 0.37}, {'connected_gene': 'RDH10-AS1', 'score': 0.25}]
chr8	GH08I073330	73330746	73330895	0.74	[{'connected_gene': 'ENSG00000253339', 'score': 12.57}, {'connected_gene': 'RDH10-AS1', 'score': 12.57}, {'connected_gene': 'RDH10', 'score': 11.47}, {'connected_gene': 'RPL7', 'score': 11.47}, {'connected_gene': 'GC08P073298', 'score': 0.29}]
chr8	GH08I073462	73462418	73467374	0.2	[{'connected_gene': 'ENSG00000253339', 'score': 11.02}, {'connected_gene': 'RDH10-AS1', 'score': 11.02}, {'connected_gene': 'RDH10', 'score': 6.55}, {'connected_gene': 'JPH1', 'score': 4.75}, {'connected_gene': 'GC08M073453', 'score': 0.77}, {'connected_gene': 'ENSG00000254273', 'score': 0.25}, {'connected_gene': 'STAU2', 'score': 0.06}]
chr8	GH08I073469	73469406	73470665	0.31	[{'connected_gene': 'ENSG00000253339', 'score': 11.01}, {'connected_gene': 'RDH10-AS1', 'score': 11.01}, {'connected_gene': 'RDH10', 'score': 4.96}, {'connected_gene': 'GC08M073453', 'score': 0.44}, {'connected_gene': 'ENSG00000254273', 'score': 0.26}, {'connected_gene': 'STAU2', 'score': 0.06}]
chr8	GH08I073299	73299509	73299859	0.56	[{'connected_gene': 'GC08P073298', 'score': 550.77}, {'connected_gene': 'RDH10-AS1', 'score': 21.58}, {'connected_gene': 'ENSG00000253339', 'score': 10.61}, {'connected_gene': 'RDH10', 'score': 0.44}]