PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000297632	[[125324230, 125326302], [125332326, 125332432], [125334345, 125334388], [125335561, 125335616], [125339594, 125339662], [125342988, 125343033], [125384094, 125384933]]	[[125326200, 125326302], [125332326, 125332432], [125334345, 125334388], [125335561, 125335616], [125339594, 125339662], [125342988, 125343033], [125384094, 125384398]]
NM_194291	[[125323158, 125326302], [125332326, 125332432], [125334345, 125334388], [125335561, 125335616], [125339594, 125339662], [125342988, 125343033], [125384094, 125384940]]	[[125326200, 125326302], [125332326, 125332432], [125334345, 125334388], [125335561, 125335616], [125339594, 125339662], [125342988, 125343033], [125384094, 125384398]]

Promoter

Chrom	Start	End	Description
chr8	125384436	125384474	CAGE_peak_6_at_TMEM65_5end
chr8	125384547	125384572	CAGE_peak_4_at_TMEM65_5end
chr8	125384582	125384599	CAGE_peak_7_at_TMEM65_5end
chr8	125384629	125384647	CAGE_peak_5_at_TMEM65_5end
chr8	125384652	125384691	CAGE_peak_3_at_TMEM65_5end
chr8	125384696	125384763	CAGE_peak_2_at_TMEM65_5end
chr8	125384927	125384952	CAGE_peak_1_at_TMEM65_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I124355	124355487	124355809	0.44	[{'connected_gene': 'TRMT12', 'score': 2.38}, {'connected_gene': 'TATDN1', 'score': 2.23}, {'connected_gene': 'NDUFB9', 'score': 2.19}, {'connected_gene': 'TMEM65', 'score': 0.37}, {'connected_gene': 'GC08M124331', 'score': 0.37}]
chr8	GH08I124194	124194017	124202681	1.74	[{'connected_gene': 'TRMT12', 'score': 34.73}, {'connected_gene': 'FAM91A1', 'score': 33.34}, {'connected_gene': 'TMEM65', 'score': 30.96}, {'connected_gene': 'WASHC5', 'score': 30.4}, {'connected_gene': 'WASHC5-AS1', 'score': 29.88}, {'connected_gene': 'RNF139-AS1', 'score': 22.34}, {'connected_gene': 'ZNF572', 'score': 19.71}, {'connected_gene': 'RNF139', 'score': 16.81}, {'connected_gene': 'NSMCE2', 'score': 13.44}, {'connected_gene': 'FER1L6-AS2', 'score': 12.96}, {'connected_gene': 'LOC105375740', 'score': 11.82}, {'connected_gene': 'RNU6-756P', 'score': 11.37}, {'connected_gene': 'ENSG00000254249', 'score': 11.31}, {'connected_gene': 'FER1L6-AS1', 'score': 11.31}, {'connected_gene': 'TATDN1', 'score': 10.49}, {'connected_gene': 'ENSG00000253106', 'score': 10.21}, {'connected_gene': 'WDYHV1', 'score': 9.66}, {'connected_gene': 'ANXA13', 'score': 4.87}, {'connected_gene': 'LOC101927588', 'score': 0.25}]
chr8	GH08I124351	124351600	124352329	0.92	[{'connected_gene': 'TRMT12', 'score': 15.07}, {'connected_gene': 'RNF139', 'score': 14.49}, {'connected_gene': 'TMEM65', 'score': 12.75}, {'connected_gene': 'LOC105375740', 'score': 11.84}, {'connected_gene': 'GC08M124331', 'score': 0.39}]
chr8	GH08I124041	124041015	124042242	0.75	[{'connected_gene': 'FER1L6-AS1', 'score': 550.77}, {'connected_gene': 'ENSG00000254249', 'score': 550.77}, {'connected_gene': 'TMEM65', 'score': 8.41}, {'connected_gene': 'GC08M123978', 'score': 0.44}, {'connected_gene': 'FER1L6', 'score': 0.09}]
chr8	GH08I124103	124103688	124105787	0.49	[{'connected_gene': 'FER1L6-AS1', 'score': 11.22}, {'connected_gene': 'ENSG00000254249', 'score': 11.22}, {'connected_gene': 'TMEM65', 'score': 8.0}, {'connected_gene': 'GC08M124076', 'score': 0.31}, {'connected_gene': 'LOC392268', 'score': 0.28}, {'connected_gene': 'FER1L6-AS2', 'score': 0.2}, {'connected_gene': 'FER1L6', 'score': 0.07}]
chr8	GH08I124140	124140648	124141936	0.8	[{'connected_gene': 'LOC392268', 'score': 550.77}, {'connected_gene': 'TMEM65', 'score': 40.19}, {'connected_gene': 'FER1L6-AS2', 'score': 12.79}, {'connected_gene': 'FER1L6-AS1', 'score': 10.84}, {'connected_gene': 'ENSG00000254249', 'score': 10.84}, {'connected_gene': 'GC08M124136', 'score': 0.34}, {'connected_gene': 'GC08M124076', 'score': 0.21}]
chr8	GH08I124179	124179872	124183896	1.38	[{'connected_gene': 'TMEM65', 'score': 61.43}, {'connected_gene': 'TATDN1', 'score': 10.49}, {'connected_gene': 'WDYHV1', 'score': 9.66}, {'connected_gene': 'FER1L6-AS2', 'score': 0.39}, {'connected_gene': 'LOC101927588', 'score': 0.2}]
chr8	GH08I124427	124427315	124428192	0.43	[{'connected_gene': 'TMEM65', 'score': 4.68}, {'connected_gene': 'GC08P124425', 'score': 0.77}, {'connected_gene': 'TRMT12', 'score': 0.34}, {'connected_gene': 'GC08P124382', 'score': 0.26}]
chr8	GH08I124033	124033801	124034000	0.2	[{'connected_gene': 'TMEM65', 'score': 8.23}, {'connected_gene': 'FER1L6-AS1', 'score': 0.44}, {'connected_gene': 'ENSG00000254249', 'score': 0.44}, {'connected_gene': 'GC08M123978', 'score': 0.39}, {'connected_gene': 'GC08P124011', 'score': 0.34}, {'connected_gene': 'GC08P124010', 'score': 0.34}, {'connected_gene': 'GC08P124012', 'score': 0.34}, {'connected_gene': 'PIR31943', 'score': 0.34}, {'connected_gene': 'GC08P124013', 'score': 0.34}, {'connected_gene': 'FER1L6', 'score': 0.09}]
chr8	GH08I124037	124037840	124038009	0.62	[{'connected_gene': 'TMEM65', 'score': 8.22}, {'connected_gene': 'FER1L6-AS1', 'score': 0.77}, {'connected_gene': 'ENSG00000254249', 'score': 0.77}, {'connected_gene': 'GC08M123978', 'score': 0.44}, {'connected_gene': 'GC08P124011', 'score': 0.31}, {'connected_gene': 'GC08P124010', 'score': 0.31}, {'connected_gene': 'GC08P124012', 'score': 0.31}, {'connected_gene': 'PIR31943', 'score': 0.31}, {'connected_gene': 'GC08P124013', 'score': 0.31}, {'connected_gene': 'FER1L6', 'score': 0.09}]
chr8	GH08I124044	124044148	124045022	0.72	[{'connected_gene': 'TMEM65', 'score': 7.84}, {'connected_gene': 'GC08M123978', 'score': 0.77}, {'connected_gene': 'FER1L6-AS1', 'score': 0.77}, {'connected_gene': 'FER1L6', 'score': 0.08}]
chr8	GH08I124190	124190212	124191940	0.4	[{'connected_gene': 'TMEM65', 'score': 10.7}, {'connected_gene': 'FER1L6-AS1', 'score': 10.52}, {'connected_gene': 'ENSG00000254249', 'score': 10.52}, {'connected_gene': 'ANXA13', 'score': 4.77}, {'connected_gene': 'FER1L6-AS2', 'score': 0.37}, {'connected_gene': 'LOC101927588', 'score': 0.22}]
chr8	GH08I124408	124408651	124409502	0.31	[{'connected_gene': 'TMEM65', 'score': 17.09}, {'connected_gene': 'FER1L6-AS1', 'score': 10.72}, {'connected_gene': 'ENSG00000254249', 'score': 10.72}, {'connected_gene': 'ENSG00000253227', 'score': 6.61}, {'connected_gene': 'GC08P124425', 'score': 0.37}, {'connected_gene': 'GC08P124382', 'score': 0.31}]
chr8	GH08I124147	124147720	124147809	0.54	[{'connected_gene': 'TMEM65', 'score': 42.87}, {'connected_gene': 'FER1L6-AS2', 'score': 12.99}, {'connected_gene': 'FER1L6-AS1', 'score': 10.71}, {'connected_gene': 'ENSG00000254249', 'score': 10.71}, {'connected_gene': 'ARF1P3', 'score': 0.77}, {'connected_gene': 'LOC392268', 'score': 0.44}, {'connected_gene': 'GC08M124136', 'score': 0.37}]
chr8	GH08I124175	124175033	124175595	0.43	[{'connected_gene': 'TMEM65', 'score': 45.38}, {'connected_gene': 'FER1L6-AS2', 'score': 0.77}, {'connected_gene': 'LOC101927588', 'score': 0.19}]
chr8	GH08I124290	124290219	124290571	0.25	[{'connected_gene': 'TMEM65', 'score': 4.01}, {'connected_gene': 'RNF139', 'score': 1.38}, {'connected_gene': 'ENSG00000237586', 'score': 0.39}, {'connected_gene': 'ENSG00000253227', 'score': 0.37}]
chr8	GH08I124226	124226220	124226429	0.56	[{'connected_gene': 'TMEM65', 'score': 10.5}, {'connected_gene': 'LOC101927588', 'score': 0.34}, {'connected_gene': 'FER1L6-AS2', 'score': 0.23}]
chr8	GH08I124370	124370600	124373566	2.01	[{'connected_gene': 'TMEM65', 'score': 550.77}, {'connected_gene': 'ENSG00000253227', 'score': 7.94}, {'connected_gene': 'GC08M124331', 'score': 0.29}]
chr8	GH08I124363	124363971	124365200	0.79	[{'connected_gene': 'TMEM65', 'score': 0.44}, {'connected_gene': 'GC08M124331', 'score': 0.31}]
chr8	GH08I124107	124107460	124112057	0.75	[{'connected_gene': 'FER1L6-AS2', 'score': 11.3}, {'connected_gene': 'FER1L6-AS1', 'score': 11.28}, {'connected_gene': 'ENSG00000254249', 'score': 11.28}, {'connected_gene': 'TMEM65', 'score': 9.65}, {'connected_gene': 'LOC392268', 'score': 0.29}, {'connected_gene': 'GC08M124076', 'score': 0.29}, {'connected_gene': 'FER1L6', 'score': 0.07}]
chr8	GH08I124192	124192947	124193645	0.43	[{'connected_gene': 'FER1L6-AS2', 'score': 11.77}, {'connected_gene': 'TMEM65', 'score': 10.71}, {'connected_gene': 'FER1L6-AS1', 'score': 10.52}, {'connected_gene': 'ENSG00000254249', 'score': 10.52}, {'connected_gene': 'LOC101927588', 'score': 0.23}]
chr8	GH08I123924	123924781	123924890	0.65	[{'connected_gene': 'ENSG00000254000', 'score': 550.77}, {'connected_gene': 'FER1L6-AS1', 'score': 11.43}, {'connected_gene': 'ENSG00000254249', 'score': 11.43}, {'connected_gene': 'TMEM65', 'score': 10.7}, {'connected_gene': 'GC08P123918', 'score': 0.44}, {'connected_gene': 'FER1L6', 'score': 0.19}]
chr8	GH08I124279	124279860	124281299	0.56	[{'connected_gene': 'ENSG00000254249', 'score': 10.35}, {'connected_gene': 'FER1L6-AS1', 'score': 10.35}, {'connected_gene': 'TMEM65', 'score': 6.38}, {'connected_gene': 'ENSG00000253227', 'score': 0.44}, {'connected_gene': 'ENSG00000237586', 'score': 0.34}]
chr8	GH08I124376	124376143	124377368	0.46	[{'connected_gene': 'ENSG00000253227', 'score': 7.65}, {'connected_gene': 'TMEM65', 'score': 0.77}, {'connected_gene': 'GC08P124382', 'score': 0.44}]