PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000400906	[[9063358, 9063577], [9064810, 9064938], [9067368, 9067444], [9070201, 9070303], [9073583, 9073694], [9074739, 9074927], [9075175, 9075301], [9078281, 9078434], [9079267, 9079392], [9082976, 9083137], [9085034, 9085133], [9086353, 9086404]]	[[9063358, 9063577], [9064810, 9064938], [9067368, 9067444], [9070201, 9070303], [9073583, 9073694], [9074739, 9074927], [9075175, 9075301], [9078281, 9078434], [9079267, 9079392], [9082976, 9083137], [9085034, 9085133], [9086353, 9086404]]
NM_207420	[[9063358, 9063577], [9064810, 9064938], [9067368, 9067444], [9070201, 9070303], [9073583, 9073694], [9074739, 9074927], [9075175, 9075301], [9078281, 9078434], [9079267, 9079392], [9082976, 9083137], [9085034, 9085133], [9086353, 9086404]]	[[9063358, 9063577], [9064810, 9064938], [9067368, 9067444], [9070201, 9070303], [9073583, 9073694], [9074739, 9074927], [9075175, 9075301], [9078281, 9078434], [9079267, 9079392], [9082976, 9083137], [9085034, 9085133], [9086353, 9086404]]

Promoter

Chrom	Start	End	Description
chr1	9086445	9086485	CAGE_peak_1_at_SLC2A7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I008993	8993307	8995275	0.56	[{'connected_gene': 'CA6', 'score': 13.18}, {'connected_gene': 'SLC2A7', 'score': 12.12}, {'connected_gene': 'RNU6-304P', 'score': 10.86}, {'connected_gene': 'MIR34A', 'score': 10.52}, {'connected_gene': 'LZIC', 'score': 5.7}, {'connected_gene': 'GC01M008979', 'score': 0.39}, {'connected_gene': 'RN7SL451P', 'score': 0.39}]
chr1	GH01I008963	8963002	8963251	0.62	[{'connected_gene': 'CA6', 'score': 0.37}, {'connected_gene': 'GC01M008979', 'score': 0.37}, {'connected_gene': 'RN7SL451P', 'score': 0.37}, {'connected_gene': 'SLC2A7', 'score': 0.21}]
chr1	GH01I009066	9066268	9070646	1.9	[{'connected_gene': 'SLC2A5', 'score': 579.51}, {'connected_gene': 'SLC2A7', 'score': 11.92}, {'connected_gene': 'RNU6-304P', 'score': 10.71}, {'connected_gene': 'GC01P009083', 'score': 0.39}, {'connected_gene': 'PIR51806', 'score': 0.29}]
chr1	GH01I009064	9064078	9065749	0.72	[{'connected_gene': 'SLC2A5', 'score': 12.98}, {'connected_gene': 'SLC2A7', 'score': 11.93}, {'connected_gene': 'RNU6-304P', 'score': 10.71}, {'connected_gene': 'GC01P009083', 'score': 0.37}, {'connected_gene': 'PIR51806', 'score': 0.31}]
chr1	GH01I009051	9051019	9051045	0.33	[{'connected_gene': 'SLC2A7', 'score': 13.39}, {'connected_gene': 'SLC2A5', 'score': 12.47}, {'connected_gene': 'GPR157', 'score': 10.75}, {'connected_gene': 'MIR34A', 'score': 10.73}, {'connected_gene': 'RNU6-304P', 'score': 10.61}, {'connected_gene': 'RERE', 'score': 1.65}, {'connected_gene': 'PIR51806', 'score': 0.37}, {'connected_gene': 'GC01P009083', 'score': 0.29}]
chr1	GH01I009005	9005001	9005594	0.98	[{'connected_gene': 'SLC2A7', 'score': 13.37}, {'connected_gene': 'SLC2A5', 'score': 12.17}, {'connected_gene': 'RNU6-304P', 'score': 10.86}, {'connected_gene': 'MIR34A', 'score': 10.19}, {'connected_gene': 'GC01M008979', 'score': 0.31}, {'connected_gene': 'RN7SL451P', 'score': 0.31}]
chr1	GH01I009021	9021416	9027671	0.96	[{'connected_gene': 'SLC2A7', 'score': 558.06}, {'connected_gene': 'SLC2A5', 'score': 10.36}, {'connected_gene': 'GC01M008979', 'score': 0.26}, {'connected_gene': 'RN7SL451P', 'score': 0.26}]
chr1	GH01I008983	8983782	8983951	0.38	[{'connected_gene': 'SLC2A7', 'score': 12.92}, {'connected_gene': 'RNU6-304P', 'score': 11.0}, {'connected_gene': 'GPR157', 'score': 10.44}, {'connected_gene': 'GC01M008979', 'score': 0.77}, {'connected_gene': 'RN7SL451P', 'score': 0.77}]
chr1	GH01I008985	8985263	8988399	0.96	[{'connected_gene': 'SLC2A7', 'score': 12.94}, {'connected_gene': 'RNU6-304P', 'score': 11.0}, {'connected_gene': 'GPR157', 'score': 10.44}, {'connected_gene': 'GC01M008979', 'score': 0.44}, {'connected_gene': 'RN7SL451P', 'score': 0.44}]
chr1	GH01I009074	9074252	9076963	1.04	[{'connected_gene': 'SLC2A7', 'score': 11.9}, {'connected_gene': 'RNU6-304P', 'score': 10.71}, {'connected_gene': 'SLC2A5', 'score': 9.24}, {'connected_gene': 'GPR157', 'score': 6.52}, {'connected_gene': 'GC01P009083', 'score': 0.44}, {'connected_gene': 'PIR51806', 'score': 0.28}]
chr1	GH01I009011	9010122	9010271	0.59	[{'connected_gene': 'SLC2A7', 'score': 0.37}, {'connected_gene': 'GC01M008979', 'score': 0.29}, {'connected_gene': 'RN7SL451P', 'score': 0.29}]
chr1	GH01I009010	9010802	9011251	0.74	[{'connected_gene': 'SLC2A7', 'score': 0.37}, {'connected_gene': 'GC01M008979', 'score': 0.29}, {'connected_gene': 'RN7SL451P', 'score': 0.29}]
chr1	GH01I009000	9000804	9002618	0.63	[{'connected_gene': 'RNU6-304P', 'score': 10.89}, {'connected_gene': 'SLC2A7', 'score': 0.34}, {'connected_gene': 'GC01M008979', 'score': 0.34}, {'connected_gene': 'RN7SL451P', 'score': 0.34}]
chr1	GH01I008970	8970486	8971600	0.76	[{'connected_gene': 'GC01M008979', 'score': 0.44}, {'connected_gene': 'RN7SL451P', 'score': 0.44}, {'connected_gene': 'CA6', 'score': 0.31}, {'connected_gene': 'SLC2A7', 'score': 0.22}]
chr1	GH01I008971	8970005	8970359	0.28	[{'connected_gene': 'GC01M008979', 'score': 0.44}, {'connected_gene': 'RN7SL451P', 'score': 0.44}, {'connected_gene': 'CA6', 'score': 0.34}, {'connected_gene': 'SLC2A7', 'score': 0.22}]