PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000373408	[[37450695, 37451065], [37452585, 37452638], [37452875, 37452970], [37467597, 37467698]]	[[37450961, 37451065], [37452585, 37452638], [37452875, 37452970], [37467597, 37467639]]
NM_138493	[[37450695, 37451065], [37452585, 37452638], [37452875, 37452970], [37467597, 37467700]]	[[37450961, 37451065], [37452585, 37452638], [37452875, 37452970], [37467597, 37467639]]

Promoter

Chrom	Start	End	Description
chr6	37467628	37467705	CAGE_peak_1_at_CCDC167_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I037497	37497082	37497394	1.02	[{'connected_gene': 'SRSF3', 'score': 13.0}, {'connected_gene': 'CCDC167', 'score': 0.77}, {'connected_gene': 'CMTR1', 'score': 0.21}]
chr6	GH06I037794	37794565	37795649	0.2	[{'connected_gene': 'MDGA1', 'score': 10.81}, {'connected_gene': 'CCDC167', 'score': 4.55}, {'connected_gene': 'ENSG00000225945', 'score': 0.34}, {'connected_gene': 'GC06P042404', 'score': 0.16}]
chr6	GH06I037473	37473276	37473819	0.62	[{'connected_gene': 'CMTR1', 'score': 11.11}, {'connected_gene': 'MDGA1', 'score': 10.8}, {'connected_gene': 'RNF8', 'score': 10.2}, {'connected_gene': 'CCDC167', 'score': 0.31}]
chr6	GH06I037454	37454905	37455054	0.31	[{'connected_gene': 'CMTR1', 'score': 11.53}, {'connected_gene': 'CCDC167', 'score': 0.26}]
chr6	GH06I037489	37489385	37491488	1.14	[{'connected_gene': 'CMTR1', 'score': 1.63}, {'connected_gene': 'CCDC167', 'score': 0.44}]
chr6	GH06I037432	37432439	37434647	2.08	[{'connected_gene': 'CMTR1', 'score': 550.77}, {'connected_gene': 'LINC02520', 'score': 15.77}, {'connected_gene': 'FGD2', 'score': 10.92}, {'connected_gene': 'RNF8', 'score': 10.46}, {'connected_gene': 'CCDC167', 'score': 0.2}]
chr6	GH06I037498	37498835	37506397	2.72	[{'connected_gene': 'CCDC167', 'score': 550.77}, {'connected_gene': 'ENSG00000227920', 'score': 17.14}, {'connected_gene': 'SRSF3', 'score': 12.83}, {'connected_gene': 'STK38', 'score': 12.59}, {'connected_gene': 'CMTR1', 'score': 11.41}, {'connected_gene': 'LINC02520', 'score': 0.77}]
chr6	GH06I037428	37428185	37428334	0.69	[{'connected_gene': 'CCDC167', 'score': 5.81}, {'connected_gene': 'CMTR1', 'score': 0.77}, {'connected_gene': 'RN7SL273P', 'score': 0.2}]
chr6	GH06I037559	37559009	37566914	1.57	[{'connected_gene': 'CCDC167', 'score': 11.68}, {'connected_gene': 'CMTR1', 'score': 11.67}, {'connected_gene': 'LINC02520', 'score': 11.57}, {'connected_gene': 'MDGA1', 'score': 10.56}, {'connected_gene': 'TBC1D22B', 'score': 10.46}, {'connected_gene': 'SRSF3', 'score': 10.42}, {'connected_gene': 'TMEM217', 'score': 4.56}, {'connected_gene': 'ENSG00000279942', 'score': 0.77}, {'connected_gene': 'MIR4462', 'score': 0.44}]
chr6	GH06I037499	37497705	37497854	0.57	[{'connected_gene': 'CCDC167', 'score': 0.77}, {'connected_gene': 'CMTR1', 'score': 0.21}]
chr6	GH06I037578	37578856	37580020	0.59	[{'connected_gene': 'CCDC167', 'score': 5.86}, {'connected_gene': 'ENSG00000279942', 'score': 0.39}, {'connected_gene': 'GC06M038599', 'score': 0.19}]
chr6	GH06I037987	37987515	37991908	0.94	[{'connected_gene': 'RNU1-87P', 'score': 12.44}, {'connected_gene': 'CMTR1', 'score': 12.21}, {'connected_gene': 'ZFAND3', 'score': 10.47}, {'connected_gene': 'ENSG00000225945', 'score': 10.47}, {'connected_gene': 'MDGA1', 'score': 9.98}, {'connected_gene': 'BTBD9-AS1', 'score': 9.16}, {'connected_gene': 'CCDC167', 'score': 4.49}, {'connected_gene': 'ENSG00000218521', 'score': 0.39}]
chr6	GH06I037556	37556631	37557619	1.15	[{'connected_gene': 'MIR4462', 'score': 550.77}, {'connected_gene': 'LINC02520', 'score': 11.59}, {'connected_gene': 'CCDC167', 'score': 11.13}, {'connected_gene': 'ENSG00000279942', 'score': 0.39}]
chr6	GH06I037484	37484498	37485049	0.6	[{'connected_gene': 'LINC02520', 'score': 11.61}, {'connected_gene': 'MDGA1', 'score': 11.26}, {'connected_gene': 'CCDC167', 'score': 0.37}, {'connected_gene': 'CMTR1', 'score': 0.23}]
chr6	GH06I037485	37484265	37484454	0.87	[{'connected_gene': 'LINC02520', 'score': 11.61}, {'connected_gene': 'MDGA1', 'score': 11.26}, {'connected_gene': 'CCDC167', 'score': 0.37}, {'connected_gene': 'CMTR1', 'score': 0.23}]
chr6	GH06I037547	37547013	37556311	1.59	[{'connected_gene': 'LINC02520', 'score': 11.61}, {'connected_gene': 'CCDC167', 'score': 11.14}, {'connected_gene': 'CMTR1', 'score': 1.29}, {'connected_gene': 'ENSG00000229559', 'score': 0.77}, {'connected_gene': 'MIR4462', 'score': 0.77}, {'connected_gene': 'ENSG00000227920', 'score': 0.44}]
chr6	GH06I037535	37535601	37536600	1.02	[{'connected_gene': 'LINC02520', 'score': 12.59}, {'connected_gene': 'CCDC167', 'score': 12.03}, {'connected_gene': 'GC06M038608', 'score': 0.77}, {'connected_gene': 'ENSG00000227920', 'score': 0.44}]
chr6	GH06I037538	37538245	37538374	0.68	[{'connected_gene': 'LINC02520', 'score': 12.58}, {'connected_gene': 'CCDC167', 'score': 12.03}, {'connected_gene': 'GC06M038608', 'score': 0.77}, {'connected_gene': 'ENSG00000227920', 'score': 0.44}]
chr6	GH06I037506	37506895	37507732	0.38	[{'connected_gene': 'LINC02520', 'score': 559.13}, {'connected_gene': 'CCDC167', 'score': 0.44}]
chr6	GH06I037441	37441786	37443599	0.66	[{'connected_gene': 'ENSG00000227920', 'score': 15.39}, {'connected_gene': 'RNF8', 'score': 10.1}, {'connected_gene': 'CMTR1', 'score': 0.44}, {'connected_gene': 'CCDC167', 'score': 0.22}]
chr6	GH06I037491	37491777	37493962	0.87	[{'connected_gene': 'ENSG00000227920', 'score': 18.09}, {'connected_gene': 'MDGA1', 'score': 11.02}, {'connected_gene': 'CCDC167', 'score': 0.44}, {'connected_gene': 'CMTR1', 'score': 0.22}]
chr6	GH06I037459	37459718	37460849	0.95	[{'connected_gene': 'ENSG00000227920', 'score': 5.01}, {'connected_gene': 'CMTR1', 'score': 0.31}, {'connected_gene': 'CCDC167', 'score': 0.28}]
chr6	GH06I037567	37567715	37568664	0.31	[{'connected_gene': 'ENSG00000279942', 'score': 550.77}, {'connected_gene': 'CCDC167', 'score': 10.4}, {'connected_gene': 'MDGA1', 'score': 10.01}, {'connected_gene': 'GC06M038599', 'score': 0.18}]
chr6	GH06I037487	37487078	37489086	0.52	[{'connected_gene': 'ENSG00000227920', 'score': 15.47}, {'connected_gene': 'CCDC167', 'score': 6.01}, {'connected_gene': 'TMEM217', 'score': 5.85}, {'connected_gene': 'CMTR1', 'score': 0.23}]
chr6	GH06I037511	37511111	37518597	1.28	[{'connected_gene': 'ENSG00000227920', 'score': 28.01}, {'connected_gene': 'LINC02520', 'score': 21.39}, {'connected_gene': 'CMTR1', 'score': 11.72}, {'connected_gene': 'TBC1D22B', 'score': 10.47}, {'connected_gene': 'SRSF3', 'score': 10.42}, {'connected_gene': 'CCDC167', 'score': 5.22}, {'connected_gene': 'GC06M038608', 'score': 0.37}]
chr6	GH06I037455	37455799	37458004	0.63	[{'connected_gene': 'ENSG00000227920', 'score': 15.26}, {'connected_gene': 'LINC02520', 'score': 11.45}, {'connected_gene': 'TMEM217', 'score': 5.97}, {'connected_gene': 'CMTR1', 'score': 0.34}, {'connected_gene': 'CCDC167', 'score': 0.26}]