PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000222033	[[5455425, 5456867]]	[[5455502, 5456792]]
NM_181710	[[5455425, 5456867]]	[[5455502, 5456792]]

Promoter

Chrom	Start	End	Description
chr19	5455421	5455447	CAGE_peak_1_at_ZNRF4_5end
chr19	5455453	5455482	CAGE_peak_2_at_ZNRF4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I005112	5112159	5114447	0.63	[{'connected_gene': 'SAFB2', 'score': 19.59}, {'connected_gene': 'ENSG00000267030', 'score': 12.25}, {'connected_gene': 'HDGFL2', 'score': 11.48}, {'connected_gene': 'KDM4B', 'score': 11.04}, {'connected_gene': 'PLIN3', 'score': 10.5}, {'connected_gene': 'RANBP3', 'score': 10.36}, {'connected_gene': 'ZNRF4', 'score': 10.24}, {'connected_gene': 'UHRF1', 'score': 4.72}, {'connected_gene': 'GC19P005127', 'score': 0.39}, {'connected_gene': 'GC19P005074', 'score': 0.28}]
chr19	GH19I005351	5351690	5352739	0.79	[{'connected_gene': 'SH3GL1', 'score': 13.66}, {'connected_gene': 'ENSG00000267255', 'score': 12.95}, {'connected_gene': 'ZNRF4', 'score': 11.0}, {'connected_gene': 'VMAC', 'score': 10.75}, {'connected_gene': 'RPL36', 'score': 10.64}, {'connected_gene': 'ENSG00000267571', 'score': 10.62}, {'connected_gene': 'SAFB2', 'score': 10.15}, {'connected_gene': 'DUS3L', 'score': 10.03}, {'connected_gene': 'HSD11B1L', 'score': 9.73}, {'connected_gene': 'PTPRS', 'score': 0.39}, {'connected_gene': 'GC19P005411', 'score': 0.22}]
chr19	GH19I005313	5313390	5313539	0.59	[{'connected_gene': 'PTPRS', 'score': 19.88}, {'connected_gene': 'ZNRF4', 'score': 10.58}, {'connected_gene': 'LOC105372252', 'score': 0.34}, {'connected_gene': 'LOC105372253', 'score': 0.34}]
chr19	GH19I005308	5308354	5309999	1.22	[{'connected_gene': 'DUS3L', 'score': 89.04}, {'connected_gene': 'ENSG00000267030', 'score': 71.9}, {'connected_gene': 'ENSG00000267571', 'score': 55.82}, {'connected_gene': 'PTPRS', 'score': 48.52}, {'connected_gene': 'SAFB', 'score': 46.09}, {'connected_gene': 'VMAC', 'score': 45.44}, {'connected_gene': 'SAFB2', 'score': 42.66}, {'connected_gene': 'ENSG00000267255', 'score': 38.9}, {'connected_gene': 'RANBP3', 'score': 37.24}, {'connected_gene': 'ENSG00000267769', 'score': 37.14}, {'connected_gene': 'KDM4B', 'score': 31.52}, {'connected_gene': 'SH3GL1', 'score': 30.35}, {'connected_gene': 'DPP9-AS1', 'score': 23.89}, {'connected_gene': 'SNRPEP4', 'score': 23.01}, {'connected_gene': 'ENSG00000269807', 'score': 11.12}, {'connected_gene': 'RPL36', 'score': 10.64}, {'connected_gene': 'ZNRF4', 'score': 10.24}, {'connected_gene': 'HDGFL2', 'score': 9.82}, {'connected_gene': 'LOC105372253', 'score': 0.37}, {'connected_gene': 'LOC105372252', 'score': 0.31}]
chr19	GH19I005434	5434451	5437369	1.15	[{'connected_gene': 'DUS3L', 'score': 22.43}, {'connected_gene': 'SNRPEP4', 'score': 14.43}, {'connected_gene': 'KHSRP', 'score': 14.16}, {'connected_gene': 'VMAC', 'score': 10.77}, {'connected_gene': 'RPL36', 'score': 10.66}, {'connected_gene': 'ENSG00000267571', 'score': 10.64}, {'connected_gene': 'ZNRF4', 'score': 0.37}, {'connected_gene': 'GC19P005411', 'score': 0.31}]
chr19	GH19I005115	5115970	5116119	0.74	[{'connected_gene': 'KDM4B', 'score': 11.47}, {'connected_gene': 'PLIN3', 'score': 10.5}, {'connected_gene': 'ZNRF4', 'score': 10.24}, {'connected_gene': 'GC19P005127', 'score': 0.39}, {'connected_gene': 'GC19P005074', 'score': 0.26}]
chr19	GH19I005116	5115370	5115519	0.51	[{'connected_gene': 'KDM4B', 'score': 11.05}, {'connected_gene': 'PLIN3', 'score': 10.5}, {'connected_gene': 'ZNRF4', 'score': 10.24}, {'connected_gene': 'GC19P005127', 'score': 0.39}, {'connected_gene': 'GC19P005074', 'score': 0.26}]
chr19	GH19I005484	5484334	5485093	0.84	[{'connected_gene': 'ZNRF4', 'score': 12.83}, {'connected_gene': 'PTPRS', 'score': 11.34}, {'connected_gene': 'GC19M005474', 'score': 0.44}, {'connected_gene': 'GC19M005512', 'score': 0.29}]
chr19	GH19I005398	5398470	5398553	0.49	[{'connected_gene': 'ZNRF4', 'score': 12.31}, {'connected_gene': 'PTPRS', 'score': 11.8}, {'connected_gene': 'GC19P005411', 'score': 0.39}]
chr19	GH19I005155	5155230	5156904	0.43	[{'connected_gene': 'ZNRF4', 'score': 10.14}, {'connected_gene': 'MYDGF', 'score': 5.83}, {'connected_gene': 'PIR36975', 'score': 0.39}, {'connected_gene': 'GC19P005167', 'score': 0.39}]
chr19	GH19I005078	5078330	5078439	0.72	[{'connected_gene': 'ZNRF4', 'score': 10.41}, {'connected_gene': 'GC19P005074', 'score': 0.77}, {'connected_gene': 'GC19P005127', 'score': 0.25}, {'connected_gene': 'KDM4B', 'score': 0.14}]
chr19	GH19I005079	5079026	5082066	0.52	[{'connected_gene': 'ZNRF4', 'score': 10.41}, {'connected_gene': 'GC19P005074', 'score': 0.44}, {'connected_gene': 'GC19P005127', 'score': 0.25}, {'connected_gene': 'KDM4B', 'score': 0.14}]
chr19	GH19I005547	5547990	5548139	0.62	[{'connected_gene': 'ZNRF4', 'score': 11.64}, {'connected_gene': 'GC19M005554', 'score': 0.39}, {'connected_gene': 'GC19M005514', 'score': 0.29}]
chr19	GH19I005499	5499250	5499399	0.49	[{'connected_gene': 'ZNRF4', 'score': 12.27}, {'connected_gene': 'GC19M005512', 'score': 0.37}, {'connected_gene': 'GC19M005474', 'score': 0.34}]
chr19	GH19I005455	5455377	5455436	0.5	[{'connected_gene': 'ZNRF4', 'score': 550.77}, {'connected_gene': 'GC19P005411', 'score': 0.25}]
chr19	GH19I005466	5466367	5467679	0.62	[{'connected_gene': 'ZNRF4', 'score': 0.39}, {'connected_gene': 'GC19M005474', 'score': 0.39}]
chr19	GH19I005045	5045751	5050224	1.34	[{'connected_gene': 'PLIN3', 'score': 11.22}, {'connected_gene': 'PTPRS', 'score': 10.64}, {'connected_gene': 'ZNRF4', 'score': 10.28}, {'connected_gene': 'UHRF1', 'score': 5.5}, {'connected_gene': 'GC19P005074', 'score': 0.31}, {'connected_gene': 'GC19M004987', 'score': 0.22}, {'connected_gene': 'KDM4B', 'score': 0.18}]
chr19	GH19I005470	5470390	5470559	0.81	[{'connected_gene': 'GC19M005474', 'score': 0.44}, {'connected_gene': 'ZNRF4', 'score': 0.37}]