PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000314391	[[58469804, 58470085], [58472758, 58472919], [58477897, 58478000], [58483830, 58483872], [58485466, 58485571], [58485679, 58485902]]	[[58469969, 58470085], [58472758, 58472919], [58477897, 58478000], [58483830, 58483872], [58485466, 58485571], [58485679, 58485800]]
NM_152474	[[58469804, 58470085], [58472758, 58472919], [58477897, 58478000], [58483830, 58483872], [58485466, 58485571], [58485679, 58485902]]	[[58469969, 58470085], [58472758, 58472919], [58477897, 58478000], [58483830, 58483872], [58485466, 58485571], [58485679, 58485800]]

Promoter

Chrom	Start	End	Description
chr19	58485895	58485905	CAGE_peak_1_at_C19orf18_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I057934	57934401	57936022	1.75	[{'connected_gene': 'ZNF418', 'score': 550.77}, {'connected_gene': 'LOC100128398', 'score': 20.73}, {'connected_gene': 'C19orf18', 'score': 10.95}, {'connected_gene': 'ZNF587', 'score': 10.23}, {'connected_gene': 'ZNF671', 'score': 9.81}, {'connected_gene': 'VN1R1', 'score': 9.5}, {'connected_gene': 'PIR52698', 'score': 0.77}]
chr19	GH19I057974	57974521	57974580	0.5	[{'connected_gene': 'C19orf18', 'score': 550.77}, {'connected_gene': 'LOC100128398', 'score': 0.31}]
chr19	GH19I058203	58203870	58204863	0.65	[{'connected_gene': 'LOC105372483', 'score': 11.38}, {'connected_gene': 'ZNF837', 'score': 9.9}, {'connected_gene': 'ZNF544', 'score': 9.62}, {'connected_gene': 'C19orf18', 'score': 1.8}, {'connected_gene': 'GC19P058214', 'score': 0.44}, {'connected_gene': 'ZNF274', 'score': 0.34}]
chr19	GH19I057990	57990537	57990829	0.24	[{'connected_gene': 'LOC100128398', 'score': 29.37}, {'connected_gene': 'ZNF606', 'score': 6.27}, {'connected_gene': 'ZSCAN4', 'score': 4.45}, {'connected_gene': 'ZSCAN1', 'score': 2.55}, {'connected_gene': 'ZIK1', 'score': 2.52}, {'connected_gene': 'ZSCAN18', 'score': 2.48}, {'connected_gene': 'ZNF418', 'score': 2.37}, {'connected_gene': 'ZNF134', 'score': 2.19}, {'connected_gene': 'ZNF549', 'score': 2.16}, {'connected_gene': 'ZNF132', 'score': 1.92}, {'connected_gene': 'ZNF416', 'score': 1.8}, {'connected_gene': 'ZNF154', 'score': 1.79}, {'connected_gene': 'ZNF135', 'score': 1.7}, {'connected_gene': 'ZNF814', 'score': 1.65}, {'connected_gene': 'ZNF256', 'score': 1.6}, {'connected_gene': 'ZNF329', 'score': 1.58}, {'connected_gene': 'ZNF550', 'score': 1.54}, {'connected_gene': 'ZNF417', 'score': 1.47}, {'connected_gene': 'ZNF8', 'score': 1.46}, {'connected_gene': 'ZNF671', 'score': 1.43}, {'connected_gene': 'ZNF776', 'score': 1.33}, {'connected_gene': 'ZNF773', 'score': 1.13}, {'connected_gene': 'C19orf18', 'score': 0.37}]
chr19	GH19I058045	58045056	58045188	0.4	[{'connected_gene': 'PIR58144', 'score': 550.77}, {'connected_gene': 'LETM1P2', 'score': 550.77}, {'connected_gene': 'GC19P058060', 'score': 550.77}, {'connected_gene': 'GC19P058061', 'score': 550.77}, {'connected_gene': 'PIR59768', 'score': 550.77}, {'connected_gene': 'C19orf18', 'score': 48.55}, {'connected_gene': 'ZSCAN18', 'score': 12.98}, {'connected_gene': 'ZNF329', 'score': 12.79}, {'connected_gene': 'ZSCAN1', 'score': 1.75}]