PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000600663	[[51834789, 51835894], [51837044, 51837199], [51837444, 51837558], [51840491, 51840788], [51841183, 51841462], [51842141, 51842396], [51842917, 51843009]]	[[51840734, 51840788], [51841183, 51841462], [51842141, 51842396], [51842917, 51842920]]
ENST00000335624	[[51835071, 51835894], [51837044, 51837199], [51837444, 51837558], [51840491, 51840788], [51841183, 51841462], [51842141, 51842396], [51843268, 51843553], [51843686, 51843980], [51844406, 51845261], [51845338, 51845378]]	[[51835864, 51835894], [51837044, 51837199], [51837444, 51837558], [51840491, 51840788], [51841183, 51841462], [51842141, 51842396], [51843268, 51843553], [51843686, 51843980], [51844406, 51845261], [51845338, 51845378]]
NM_001163922	[[51834794, 51835894], [51837044, 51837199], [51837444, 51837558], [51840491, 51840788], [51841183, 51841462], [51842141, 51842396], [51843268, 51843553], [51843686, 51843980], [51844406, 51845261], [51845338, 51845378]]	[[51835864, 51835894], [51837044, 51837199], [51837444, 51837558], [51840491, 51840788], [51841183, 51841462], [51842141, 51842396], [51843268, 51843553], [51843686, 51843980], [51844406, 51845261], [51845338, 51845378]]

Promoter

Chrom	Start	End	Description
chr19	51845384	51845409	CAGE_peak_1_at_VSIG10L_5end
chr19	51845411	51845412	CAGE_peak_10_at_VSIG10L_5end
chr19	51845449	51845465	CAGE_peak_4_at_VSIG10L_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I051438	51438367	51438456	0.59	[{'connected_gene': 'SIGLEC12', 'score': 12.05}, {'connected_gene': 'CEACAM18', 'score': 11.44}, {'connected_gene': 'VSIG10L', 'score': 11.08}, {'connected_gene': 'SIGLEC5', 'score': 11.01}, {'connected_gene': 'SIGLEC14', 'score': 11.01}, {'connected_gene': 'RPL7P51', 'score': 11.01}, {'connected_gene': 'NKG7', 'score': 10.85}, {'connected_gene': 'CLDND2', 'score': 10.85}, {'connected_gene': 'ETFB', 'score': 10.84}, {'connected_gene': 'SPACA6', 'score': 9.86}, {'connected_gene': 'MIR125A', 'score': 9.86}, {'connected_gene': 'MIR99B', 'score': 9.86}, {'connected_gene': 'MIRLET7E', 'score': 9.86}, {'connected_gene': 'ENSG00000269181', 'score': 0.77}, {'connected_gene': 'ENSG00000268711', 'score': 0.39}]
chr19	GH19I051430	51430801	51431629	1.02	[{'connected_gene': 'SIGLEC10', 'score': 7.31}, {'connected_gene': 'VSIG10L', 'score': 5.33}, {'connected_gene': 'SIGLEC14', 'score': 5.09}, {'connected_gene': 'SIGLEC9', 'score': 2.45}, {'connected_gene': 'FPR3', 'score': 1.77}, {'connected_gene': 'FPR2', 'score': 1.61}, {'connected_gene': 'FPR1', 'score': 1.48}, {'connected_gene': 'ENSG00000268711', 'score': 0.77}, {'connected_gene': 'ENSG00000269181', 'score': 0.39}]
chr19	GH19I051370	51370248	51376452	1.46	[{'connected_gene': 'NKG7', 'score': 550.77}, {'connected_gene': 'VSIG10L', 'score': 5.84}, {'connected_gene': 'LIM2', 'score': 0.39}]
chr19	GH19I051406	51406801	51409732	1.02	[{'connected_gene': 'NKG7', 'score': 11.92}, {'connected_gene': 'CLDND2', 'score': 11.92}, {'connected_gene': 'ETFB', 'score': 11.91}, {'connected_gene': 'SIGLEC8', 'score': 11.39}, {'connected_gene': 'VSIG10L', 'score': 11.29}, {'connected_gene': 'RPL7P51', 'score': 10.03}, {'connected_gene': 'SIGLEC5', 'score': 10.03}, {'connected_gene': 'SIGLEC14', 'score': 10.03}, {'connected_gene': 'FPR3', 'score': 9.1}, {'connected_gene': 'SIGLEC10', 'score': 6.25}, {'connected_gene': 'NIFKP6', 'score': 0.77}, {'connected_gene': 'ENSG00000254760', 'score': 0.44}, {'connected_gene': 'LOC105372446', 'score': 0.39}]
chr19	GH19I051259	51259467	51259616	0.6	[{'connected_gene': 'SIGLEC17P', 'score': 12.48}, {'connected_gene': 'VSIG10L', 'score': 9.99}, {'connected_gene': 'CTU1', 'score': 9.82}, {'connected_gene': 'SIGLEC5', 'score': 9.03}, {'connected_gene': 'SIGLEC14', 'score': 9.03}, {'connected_gene': 'RPL7P51', 'score': 9.03}, {'connected_gene': 'ENSG00000268595', 'score': 0.39}, {'connected_gene': 'SIGLECL1', 'score': 0.39}]
chr19	GH19I051294	51294267	51294416	0.56	[{'connected_gene': 'SIGLEC8', 'score': 10.76}, {'connected_gene': 'VSIG10L', 'score': 10.45}, {'connected_gene': 'LOC100420904', 'score': 0.39}, {'connected_gene': 'IGLON5', 'score': 0.37}, {'connected_gene': 'LINC01872', 'score': 0.34}]
chr19	GH19I051295	51295565	51296082	0.2	[{'connected_gene': 'SIGLEC8', 'score': 10.76}, {'connected_gene': 'VSIG10L', 'score': 10.45}, {'connected_gene': 'LOC100420904', 'score': 0.39}, {'connected_gene': 'IGLON5', 'score': 0.37}]
chr19	GH19I051360	51360670	51369216	2.53	[{'connected_gene': 'ETFB', 'score': 555.99}, {'connected_gene': 'ENSG00000268520', 'score': 550.77}, {'connected_gene': 'CLDND2', 'score': 550.77}, {'connected_gene': 'ZNF616', 'score': 36.29}, {'connected_gene': 'POLD1', 'score': 35.07}, {'connected_gene': 'ZNF766', 'score': 32.5}, {'connected_gene': 'ZNF836', 'score': 28.96}, {'connected_gene': 'ZNF841', 'score': 26.45}, {'connected_gene': 'ZNF577', 'score': 24.27}, {'connected_gene': 'ZNF175', 'score': 23.0}, {'connected_gene': 'LOC100419835', 'score': 20.73}, {'connected_gene': 'VSIG10L', 'score': 14.44}, {'connected_gene': 'ZNF614', 'score': 14.04}, {'connected_gene': 'ENSG00000267808', 'score': 13.87}, {'connected_gene': 'ZNF615', 'score': 13.49}, {'connected_gene': 'ZNF350', 'score': 12.23}, {'connected_gene': 'ZNF432', 'score': 11.56}, {'connected_gene': 'CTU1', 'score': 10.91}, {'connected_gene': 'ZNF649', 'score': 10.88}, {'connected_gene': 'SIGLEC6', 'score': 10.74}, {'connected_gene': 'ZNF480', 'score': 10.29}, {'connected_gene': 'SIGLEC8', 'score': 10.21}, {'connected_gene': 'ZNF613', 'score': 10.1}, {'connected_gene': 'SIGLEC5', 'score': 10.02}, {'connected_gene': 'SIGLEC14', 'score': 10.02}, {'connected_gene': 'RPL7P51', 'score': 10.02}, {'connected_gene': 'ENSG00000268316', 'score': 9.69}, {'connected_gene': 'ENSG00000269403', 'score': 0.77}, {'connected_gene': 'ENSG00000267984', 'score': 0.37}]
chr19	GH19I051358	51358907	51360290	0.54	[{'connected_gene': 'VSIG10L', 'score': 11.45}, {'connected_gene': 'SIGLEC5', 'score': 10.71}, {'connected_gene': 'SIGLEC14', 'score': 10.71}, {'connected_gene': 'RPL7P51', 'score': 10.71}, {'connected_gene': 'SIGLEC8', 'score': 10.21}, {'connected_gene': 'ETFB', 'score': 0.44}, {'connected_gene': 'ENSG00000268520', 'score': 0.44}, {'connected_gene': 'ENSG00000269403', 'score': 0.44}, {'connected_gene': 'ENSG00000267984', 'score': 0.39}]
chr19	GH19I051292	51292889	51294051	0.46	[{'connected_gene': 'VSIG10L', 'score': 16.85}, {'connected_gene': 'SIGLEC8', 'score': 10.82}, {'connected_gene': 'CTU1', 'score': 9.93}, {'connected_gene': 'RPL7P51', 'score': 9.71}, {'connected_gene': 'SIGLEC5', 'score': 9.7}, {'connected_gene': 'SIGLEC14', 'score': 9.7}, {'connected_gene': 'ENSG00000268595', 'score': 5.85}, {'connected_gene': 'LOC100420904', 'score': 0.39}, {'connected_gene': 'IGLON5', 'score': 0.37}, {'connected_gene': 'LINC01872', 'score': 0.34}]
chr19	GH19I051349	51349465	51353328	1.01	[{'connected_gene': 'VSIG10L', 'score': 14.24}, {'connected_gene': 'SIGLEC8', 'score': 10.73}, {'connected_gene': 'SIGLEC14', 'score': 10.01}, {'connected_gene': 'RPL7P51', 'score': 10.01}, {'connected_gene': 'SIGLEC5', 'score': 10.01}, {'connected_gene': 'IGLON5', 'score': 9.55}, {'connected_gene': 'NKG7', 'score': 5.52}, {'connected_gene': 'ENSG00000267984', 'score': 0.44}, {'connected_gene': 'ENSG00000268520', 'score': 0.39}, {'connected_gene': 'ETFB', 'score': 0.37}, {'connected_gene': 'ENSG00000269403', 'score': 0.37}]
chr19	GH19I051344	51342627	51342776	0.49	[{'connected_gene': 'VSIG10L', 'score': 559.94}, {'connected_gene': 'ENSG00000267905', 'score': 0.77}, {'connected_gene': 'ENSG00000267984', 'score': 0.77}]
chr19	GH19I051338	51338387	51341183	1.55	[{'connected_gene': 'ENSG00000267905', 'score': 550.77}, {'connected_gene': 'ZNF841', 'score': 30.11}, {'connected_gene': 'ZNF577', 'score': 27.07}, {'connected_gene': 'POLD1', 'score': 26.43}, {'connected_gene': 'ZNF616', 'score': 26.07}, {'connected_gene': 'ZNF175', 'score': 23.22}, {'connected_gene': 'ZNF480', 'score': 20.77}, {'connected_gene': 'ZNF766', 'score': 20.09}, {'connected_gene': 'ZNF350', 'score': 19.83}, {'connected_gene': 'ZNF836', 'score': 12.72}, {'connected_gene': 'ZNF613', 'score': 12.32}, {'connected_gene': 'CLDND2', 'score': 12.16}, {'connected_gene': 'ETFB', 'score': 12.16}, {'connected_gene': 'NKG7', 'score': 12.14}, {'connected_gene': 'ZNF432', 'score': 11.75}, {'connected_gene': 'ZNF649', 'score': 11.42}, {'connected_gene': 'SIGLEC8', 'score': 10.79}, {'connected_gene': 'SIGLEC6', 'score': 10.72}, {'connected_gene': 'CEACAM18', 'score': 10.3}, {'connected_gene': 'VSIG10L', 'score': 10.19}, {'connected_gene': 'SIGLEC5', 'score': 9.97}, {'connected_gene': 'SIGLEC14', 'score': 9.97}, {'connected_gene': 'RPL7P51', 'score': 9.97}, {'connected_gene': 'LOC100419835', 'score': 9.78}, {'connected_gene': 'ENSG00000269102', 'score': 9.72}, {'connected_gene': 'GC19M051338', 'score': 0.44}]
chr19	GH19I051343	51343225	51343243	0.57	[{'connected_gene': 'ENSG00000267984', 'score': 550.77}, {'connected_gene': 'VSIG10L', 'score': 550.77}, {'connected_gene': 'ENSG00000267905', 'score': 0.77}]
chr19	GH19I051341	51341887	51342036	0.38	[{'connected_gene': 'ENSG00000267905', 'score': 550.77}, {'connected_gene': 'VSIG10L', 'score': 550.77}]
chr19	GH19I051342	51342129	51342188	0.73	[{'connected_gene': 'ENSG00000267905', 'score': 550.77}, {'connected_gene': 'VSIG10L', 'score': 550.77}, {'connected_gene': 'ENSG00000267984', 'score': 0.77}]