PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000574923	[[10721357, 10721656], [10729620, 10729775], [10765566, 10765635]]	None
ENST00000283025	[[10721357, 10721656], [10729620, 10729775], [10769815, 10770038], [10775849, 10775993], [10783109, 10783180], [10783798, 10783882], [10788166, 10788802]]	[[10721439, 10721656], [10729620, 10729775], [10769815, 10770038], [10775849, 10775993], [10783109, 10783180], [10783798, 10783882], [10788166, 10788730]]
ENST00000576638	[[10729620, 10729775], [10769815, 10770038], [10775849, 10775993], [10783109, 10783180], [10783798, 10783976]]	[[10729620, 10729775], [10769815, 10770038], [10775849, 10775993], [10783109, 10783147]]
NM_144674	[[10721360, 10721656], [10729620, 10729775], [10769815, 10770038], [10775849, 10775993], [10783109, 10783180], [10783798, 10783882], [10788166, 10788802]]	[[10721439, 10721656], [10729620, 10729775], [10769815, 10770038], [10775849, 10775993], [10783109, 10783180], [10783798, 10783882], [10788166, 10788730]]

Promoter

Chrom	Start	End	Description
chr16	10788754	10788768	CAGE_peak_2_at_TEKT5_5end
chr16	10788770	10788803	CAGE_peak_1_at_TEKT5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I010652	10652011	10653735	1.01	[{'connected_gene': 'SOCS1', 'score': 14.87}, {'connected_gene': 'HNRNPCP4', 'score': 14.3}, {'connected_gene': 'ENSG00000256013', 'score': 10.82}, {'connected_gene': 'NUBP1', 'score': 10.45}, {'connected_gene': 'LOC105371079', 'score': 0.28}, {'connected_gene': 'EMP2', 'score': 0.19}, {'connected_gene': 'TEKT5', 'score': 0.17}, {'connected_gene': 'GC16P010485', 'score': 0.1}]
chr16	GH16I010770	10770551	10771284	0.31	[{'connected_gene': 'CIITA', 'score': 12.14}, {'connected_gene': 'DEXI', 'score': 10.89}, {'connected_gene': 'CLEC16A', 'score': 10.89}, {'connected_gene': 'ENSG00000256013', 'score': 9.61}, {'connected_gene': 'TVP23A', 'score': 5.6}, {'connected_gene': 'TEKT5', 'score': 4.91}, {'connected_gene': 'PIR44837', 'score': 0.39}, {'connected_gene': 'GC16P010485', 'score': 0.06}]
chr16	GH16I010752	10752682	10754131	1.2	[{'connected_gene': 'CIITA', 'score': 15.33}, {'connected_gene': 'NUBP1', 'score': 7.2}, {'connected_gene': 'TEKT5', 'score': 6.82}, {'connected_gene': 'PIR44837', 'score': 0.44}, {'connected_gene': 'GC16P010485', 'score': 0.06}]
chr16	GH16I010608	10608496	10612339	1.3	[{'connected_gene': 'EMP2', 'score': 12.39}, {'connected_gene': 'CLEC16A', 'score': 5.04}, {'connected_gene': 'LOC105371079', 'score': 0.18}, {'connected_gene': 'GC16P010485', 'score': 0.13}, {'connected_gene': 'TEKT5', 'score': 0.12}]
chr16	GH16I010625	10625492	10626400	1.05	[{'connected_gene': 'EMP2', 'score': 0.25}, {'connected_gene': 'LOC105371079', 'score': 0.2}, {'connected_gene': 'TEKT5', 'score': 0.13}, {'connected_gene': 'GC16P010485', 'score': 0.11}]
chr16	GH16I010612	10612640	10613423	0.69	[{'connected_gene': 'EMP2', 'score': 12.37}, {'connected_gene': 'LOC105371079', 'score': 0.18}, {'connected_gene': 'TEKT5', 'score': 0.13}, {'connected_gene': 'GC16P010485', 'score': 0.13}]
chr16	GH16I010583	10583373	10583532	0.43	[{'connected_gene': 'EMP2', 'score': 0.77}, {'connected_gene': 'GC16P010485', 'score': 0.15}, {'connected_gene': 'LOC105371079', 'score': 0.14}, {'connected_gene': 'TEKT5', 'score': 0.1}]
chr16	GH16I010629	10629604	10629873	0.54	[{'connected_gene': 'EMP2', 'score': 0.25}, {'connected_gene': 'LOC105371079', 'score': 0.21}, {'connected_gene': 'TEKT5', 'score': 0.14}, {'connected_gene': 'GC16P010485', 'score': 0.11}]
chr16	GH16I010628	10628058	10629198	0.82	[{'connected_gene': 'EMP2', 'score': 0.25}, {'connected_gene': 'LOC105371079', 'score': 0.21}, {'connected_gene': 'TEKT5', 'score': 0.14}, {'connected_gene': 'GC16P010485', 'score': 0.11}]
chr16	GH16I010600	10600162	10603017	1.25	[{'connected_gene': 'EMP2', 'score': 0.34}, {'connected_gene': 'LOC105371079', 'score': 0.17}, {'connected_gene': 'GC16P010485', 'score': 0.13}, {'connected_gene': 'TEKT5', 'score': 0.11}]
chr16	GH16I010624	10624644	10624793	0.72	[{'connected_gene': 'EMP2', 'score': 0.26}, {'connected_gene': 'LOC105371079', 'score': 0.2}, {'connected_gene': 'TEKT5', 'score': 0.13}, {'connected_gene': 'GC16P010485', 'score': 0.12}]
chr16	GH16I010621	10621275	10623438	0.94	[{'connected_gene': 'EMP2', 'score': 0.26}, {'connected_gene': 'LOC105371079', 'score': 0.2}, {'connected_gene': 'TEKT5', 'score': 0.13}, {'connected_gene': 'GC16P010485', 'score': 0.12}]
chr16	GH16I010729	10729824	10729993	0.77	[{'connected_gene': 'TEKT5', 'score': 6.85}, {'connected_gene': 'MTATP6P24', 'score': 0.77}, {'connected_gene': 'GC16P010738', 'score': 0.44}, {'connected_gene': 'GC16P010485', 'score': 0.07}]
chr16	GH16I010694	10694920	10694979	0.61	[{'connected_gene': 'TEKT5', 'score': 550.25}, {'connected_gene': 'LOC105371079', 'score': 0.77}, {'connected_gene': 'MTCYBP33', 'score': 0.34}, {'connected_gene': 'GC16P010485', 'score': 0.08}]
chr16	GH16I010743	10742633	10746133	2.08	[{'connected_gene': 'TEKT5', 'score': 556.79}, {'connected_gene': 'NUBP1', 'score': 550.77}, {'connected_gene': 'HNRNPCP4', 'score': 12.48}, {'connected_gene': 'CIITA', 'score': 12.18}, {'connected_gene': 'ENSG00000256013', 'score': 11.07}, {'connected_gene': 'SOCS1', 'score': 10.2}, {'connected_gene': 'PIR44837', 'score': 0.39}, {'connected_gene': 'GC16P010485', 'score': 0.07}]
chr16	GH16I010690	10690718	10690873	0.4	[{'connected_gene': 'LOC105371079', 'score': 550.77}, {'connected_gene': 'TEKT5', 'score': 70.98}, {'connected_gene': 'CLEC16A', 'score': 2.87}, {'connected_gene': 'EMP2', 'score': 0.14}, {'connected_gene': 'GC16P010485', 'score': 0.08}]
chr16	GH16I010662	10662995	10663843	0.54	[{'connected_gene': 'LOC105371079', 'score': 0.31}, {'connected_gene': 'TEKT5', 'score': 0.18}, {'connected_gene': 'EMP2', 'score': 0.18}, {'connected_gene': 'GC16P010485', 'score': 0.1}]
chr16	GH16I010688	10688484	10688633	0.64	[{'connected_gene': 'LOC105371079', 'score': 0.77}, {'connected_gene': 'TEKT5', 'score': 0.23}, {'connected_gene': 'EMP2', 'score': 0.14}, {'connected_gene': 'GC16P010485', 'score': 0.08}]
chr16	GH16I010742	10742001	10742200	0.63	[{'connected_gene': 'NUBP1', 'score': 550.77}, {'connected_gene': 'TEKT5', 'score': 550.77}, {'connected_gene': 'ENSG00000256013', 'score': 11.07}, {'connected_gene': 'GC16P010738', 'score': 0.77}, {'connected_gene': 'GC16P010485', 'score': 0.07}]
chr16	GH16I010626	10626959	10627919	0.54	[{'connected_gene': 'HNRNPCP4', 'score': 14.71}, {'connected_gene': 'ENSG00000256013', 'score': 11.17}, {'connected_gene': 'SOCS1', 'score': 10.67}, {'connected_gene': 'EMP2', 'score': 0.25}, {'connected_gene': 'LOC105371079', 'score': 0.21}, {'connected_gene': 'TEKT5', 'score': 0.14}, {'connected_gene': 'GC16P010485', 'score': 0.11}]
chr16	GH16I010594	10594318	10599913	1.09	[{'connected_gene': 'HNRNPCP4', 'score': 14.71}, {'connected_gene': 'EMP2', 'score': 12.38}, {'connected_gene': 'ENSG00000256013', 'score': 10.97}, {'connected_gene': 'SOCS1', 'score': 10.67}, {'connected_gene': 'LOC105371079', 'score': 0.16}, {'connected_gene': 'GC16P010485', 'score': 0.14}, {'connected_gene': 'TEKT5', 'score': 0.11}]
chr16	GH16I010590	10590914	10593878	0.31	[{'connected_gene': 'ENSG00000256013', 'score': 10.98}, {'connected_gene': 'ATF7IP2', 'score': 4.69}, {'connected_gene': 'EMP2', 'score': 0.39}, {'connected_gene': 'LOC105371079', 'score': 0.15}, {'connected_gene': 'GC16P010485', 'score': 0.14}, {'connected_gene': 'TEKT5', 'score': 0.1}]
chr16	GH16I010918	10918268	10919493	1.58	[{'connected_gene': 'ENSG00000262222', 'score': 7.21}, {'connected_gene': 'CIITA', 'score': 3.15}, {'connected_gene': 'TVP23A', 'score': 3.04}, {'connected_gene': 'CLEC16A', 'score': 2.84}, {'connected_gene': 'TEKT5', 'score': 1.54}, {'connected_gene': 'GC16M010929', 'score': 0.39}, {'connected_gene': 'PIR39040', 'score': 0.39}, {'connected_gene': 'GC16P010903', 'score': 0.37}, {'connected_gene': 'GC16P010485', 'score': 0.04}]
chr16	GH16I010575	10575710	10581896	2.44	[{'connected_gene': 'ENSG00000260310', 'score': 560.33}, {'connected_gene': 'EMP2', 'score': 553.45}, {'connected_gene': 'SOCS1', 'score': 14.87}, {'connected_gene': 'HNRNPCP4', 'score': 14.29}, {'connected_gene': 'ENSG00000256013', 'score': 11.63}, {'connected_gene': 'NUBP1', 'score': 10.39}, {'connected_gene': 'LOC400499', 'score': 5.3}, {'connected_gene': 'ATF7IP2', 'score': 1.3}, {'connected_gene': 'GC16P010485', 'score': 0.16}, {'connected_gene': 'TEKT5', 'score': 0.1}]
chr16	GH16I010588	10588647	10590817	0.52	[{'connected_gene': 'ENSG00000256013', 'score': 10.78}, {'connected_gene': 'EMP2', 'score': 0.44}, {'connected_gene': 'LOC105371079', 'score': 0.15}, {'connected_gene': 'GC16P010485', 'score': 0.15}, {'connected_gene': 'TEKT5', 'score': 0.1}]
chr16	GH16I010584	10584553	10585793	0.2	[{'connected_gene': 'ENSG00000260310', 'score': 5.52}, {'connected_gene': 'EMP2', 'score': 0.77}, {'connected_gene': 'GC16P010485', 'score': 0.15}, {'connected_gene': 'LOC105371079', 'score': 0.14}, {'connected_gene': 'TEKT5', 'score': 0.1}]
chr16	GH16I010613	10613924	10614013	0.62	[{'connected_gene': 'ENSG00000256013', 'score': 11.01}, {'connected_gene': 'EMP2', 'score': 0.29}, {'connected_gene': 'LOC105371079', 'score': 0.18}, {'connected_gene': 'TEKT5', 'score': 0.13}, {'connected_gene': 'GC16P010485', 'score': 0.13}]
chr16	GH16I010615	10615734	10620579	1.66	[{'connected_gene': 'ENSG00000256013', 'score': 11.0}, {'connected_gene': 'EMP2', 'score': 5.51}, {'connected_gene': 'NUBP1', 'score': 5.46}, {'connected_gene': 'ENSG00000260310', 'score': 4.68}, {'connected_gene': 'GRIN2A', 'score': 4.42}, {'connected_gene': 'LOC105371079', 'score': 0.19}, {'connected_gene': 'TEKT5', 'score': 0.13}, {'connected_gene': 'GC16P010485', 'score': 0.12}]
chr16	GH16I010740	10740344	10740413	0.49	[{'connected_gene': 'ENSG00000256013', 'score': 11.32}, {'connected_gene': 'TEKT5', 'score': 0.77}, {'connected_gene': 'GC16P010738', 'score': 0.77}, {'connected_gene': 'GC16P010485', 'score': 0.07}]
chr16	GH16I010641	10641880	10643077	0.81	[{'connected_gene': 'ENSG00000256013', 'score': 10.17}, {'connected_gene': 'LOC105371079', 'score': 0.25}, {'connected_gene': 'EMP2', 'score': 0.21}, {'connected_gene': 'TEKT5', 'score': 0.15}, {'connected_gene': 'GC16P010485', 'score': 0.1}]
chr16	GH16I010665	10665186	10665435	0.4	[{'connected_gene': 'ENSG00000256013', 'score': 10.71}, {'connected_gene': 'LOC105371079', 'score': 0.31}, {'connected_gene': 'TEKT5', 'score': 0.18}, {'connected_gene': 'EMP2', 'score': 0.18}, {'connected_gene': 'GC16P010485', 'score': 0.1}]
chr16	GH16I010678	10678507	10679206	0.43	[{'connected_gene': 'ENSG00000256013', 'score': 10.12}, {'connected_gene': 'LOC105371079', 'score': 0.39}, {'connected_gene': 'TEKT5', 'score': 0.21}, {'connected_gene': 'EMP2', 'score': 0.15}, {'connected_gene': 'GC16P010485', 'score': 0.08}]
chr16	GH16I010736	10736684	10739553	1.25	[{'connected_gene': 'GC16P010738', 'score': 550.77}, {'connected_gene': 'ENSG00000256013', 'score': 11.32}, {'connected_gene': 'HNRNPCP4', 'score': 9.73}, {'connected_gene': 'TEKT5', 'score': 7.49}, {'connected_gene': 'TVP23A', 'score': 4.74}, {'connected_gene': 'MTATP6P24', 'score': 0.39}, {'connected_gene': 'GC16P010485', 'score': 0.07}]