PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000298119	[[42076772, 42077765], [42236056, 42236232], [42355808, 42357213], [42360452, 42361165], [42368119, 42368163], [42373360, 42373752]]	[[42355828, 42357213], [42360452, 42361165], [42368119, 42368163], [42373360, 42373378]]
ENST00000555279	[[42077471, 42077765], [42200539, 42200556], [42202673, 42202835], [42236056, 42236165]]	None
ENST00000554120	[[42077617, 42077765], [42236056, 42236232], [42355808, 42357213], [42373360, 42373752]]	[[42355828, 42357213], [42373360, 42373373]]
ENST00000554171	[[42168629, 42170749], [42200539, 42200556], [42200974, 42201073], [42236056, 42236232], [42355808, 42357213], [42368119, 42368163], [42373360, 42373752]]	[[42355828, 42357213], [42368119, 42368135]]
ENST00000553926	[[42077580, 42077765], [42079311, 42079330]]	None
NM_001346175	[[42076058, 42077765], [42355808, 42357213], [42368119, 42368163], [42373360, 42373752]]	[[42355828, 42357213], [42368119, 42368135]]
NM_001346173	[[42076058, 42077765], [42355808, 42357213], [42360452, 42361165], [42368119, 42368163], [42373360, 42373752]]	[[42355828, 42357213], [42360452, 42361165], [42368119, 42368163], [42373360, 42373378]]
NM_001330106	[[42076058, 42077765], [42236056, 42236232], [42355808, 42357213], [42368119, 42368163], [42373360, 42373752]]	[[42355828, 42357213], [42368119, 42368135]]
NM_152447	[[42076058, 42077765], [42236056, 42236232], [42355808, 42357213], [42360452, 42361165], [42368119, 42368163], [42373360, 42373752]]	[[42355828, 42357213], [42360452, 42361165], [42368119, 42368163], [42373360, 42373378]]
NR_144388	[[42076058, 42077765], [42236056, 42236232], [42355808, 42357213], [42360452, 42361488], [42368119, 42368163], [42373360, 42373752]]	None
NR_144389	[[42076058, 42077765], [42236056, 42236232], [42355808, 42357213], [42357548, 42357740], [42360452, 42361165], [42368119, 42368163], [42373360, 42373752]]	None

Promoter

Chrom	Start	End	Description
chr14	42076296	42076329	CAGE_peak_4_at_LRFN5_5end
chr14	42076359	42076374	CAGE_peak_8_at_LRFN5_5end
chr14	42076531	42076545	CAGE_peak_6_at_LRFN5_5end
chr14	42076765	42076789	CAGE_peak_2_at_LRFN5_5end
chr14	42076794	42076821	CAGE_peak_3_at_LRFN5_5end
chr14	42077438	42077542	CAGE_peak_1_at_LRFN5_5end
chr14	42077552	42077570	CAGE_peak_7_at_LRFN5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I041688	41688908	41689219	0.24	[{'connected_gene': 'LRFN5', 'score': 8.28}, {'connected_gene': 'LOC105370469', 'score': 7.49}, {'connected_gene': 'GC14M041694', 'score': 0.44}, {'connected_gene': 'GC14P041642', 'score': 0.25}, {'connected_gene': 'GC14M041630', 'score': 0.05}]
chr14	GH14I041600	41600638	41600787	0.62	[{'connected_gene': 'LRFN5', 'score': 5.24}, {'connected_gene': 'ENSG00000251858', 'score': 0.44}, {'connected_gene': 'LOC105370469', 'score': 0.44}]
chr14	GH14I041862	41862949	41863008	0.5	[{'connected_gene': 'LRFN5', 'score': 550.07}, {'connected_gene': 'GC14M041854', 'score': 0.77}, {'connected_gene': 'GC14P041836', 'score': 0.31}, {'connected_gene': 'GC14M041630', 'score': 0.09}]
chr14	GH14I041830	41830534	41831527	0.43	[{'connected_gene': 'LRFN5', 'score': 4.82}, {'connected_gene': 'GC14P041834', 'score': 0.77}, {'connected_gene': 'GC14M041777', 'score': 0.25}, {'connected_gene': 'GC14M041630', 'score': 0.08}]
chr14	GH14I041610	41610659	41610787	0.54	[{'connected_gene': 'LRFN5', 'score': 2.22}, {'connected_gene': 'GC14P041642', 'score': 0.29}]
chr14	GH14I041743	41743201	41743342	0.22	[{'connected_gene': 'FKBP1BP1', 'score': 550.77}, {'connected_gene': 'LRFN5', 'score': 5.74}, {'connected_gene': 'GC14M041777', 'score': 0.28}, {'connected_gene': 'GC14M041630', 'score': 0.06}]
chr14	GH14I041749	41749038	41749937	0.4	[{'connected_gene': 'FKBP1BP1', 'score': 0.44}, {'connected_gene': 'GC14M041777', 'score': 0.29}, {'connected_gene': 'LRFN5', 'score': 0.11}, {'connected_gene': 'GC14M041630', 'score': 0.06}]
chr14	GH14I041549	41549399	41551061	0.54	[{'connected_gene': 'LOC105370469', 'score': 18.79}, {'connected_gene': 'LRFN5', 'score': 6.62}, {'connected_gene': 'ENSG00000258901', 'score': 0.44}, {'connected_gene': 'ENSG00000279972', 'score': 0.29}]
chr14	GH14I041828	41828385	41828739	0.24	[{'connected_gene': 'LOC105370469', 'score': 5.72}, {'connected_gene': 'LRFN5', 'score': 2.44}, {'connected_gene': 'GC14P041834', 'score': 0.44}, {'connected_gene': 'GC14M041777', 'score': 0.25}, {'connected_gene': 'GC14M041630', 'score': 0.08}]
chr14	GH14I041597	41597318	41598102	0.63	[{'connected_gene': 'LOC105370469', 'score': 23.85}, {'connected_gene': 'LRFN5', 'score': 9.45}, {'connected_gene': 'ENSG00000251858', 'score': 0.77}]
chr14	GH14I041602	41602385	41610587	2.41	[{'connected_gene': 'LOC105370469', 'score': 578.35}, {'connected_gene': 'LRFN5', 'score': 571.01}, {'connected_gene': 'ENSG00000251858', 'score': 0.39}]
chr14	GH14I041871	41871819	41874608	0.31	[{'connected_gene': 'GC14M041854', 'score': 0.44}, {'connected_gene': 'GC14M041908', 'score': 0.28}, {'connected_gene': 'GC14M041630', 'score': 0.09}, {'connected_gene': 'LRFN5', 'score': 0.06}]