PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000381989	[[24995063, 24995452], [25000603, 25000736], [25005514, 25005614], [25008532, 25009612], [25015983, 25016106], [25016727, 25016823], [25017787, 25017868], [25020818, 25020899], [25021153, 25021324], [25023855, 25023955], [25026543, 25026731], [25027724, 25027792], [25029154, 25029350], [25030478, 25030616], [25033181, 25033260], [25033401, 25033448], [25034109, 25034274], [25043161, 25043248], [25044031, 25044163], [25049609, 25049734], [25051838, 25051995], [25052230, 25052414], [25058790, 25058886], [25060305, 25060443], [25064805, 25064966], [25066558, 25066732], [25067733, 25067871], [25068710, 25068860], [25072253, 25072367], [25073438, 25073514], [25074453, 25074520], [25075770, 25075972], [25077782, 25077915], [25086843, 25086948]]	[[24995256, 24995452], [25000603, 25000736], [25005514, 25005614], [25008532, 25009612], [25015983, 25016106], [25016727, 25016823], [25017787, 25017868], [25020818, 25020899], [25021153, 25021324], [25023855, 25023955], [25026543, 25026731], [25027724, 25027792], [25029154, 25029350], [25030478, 25030616], [25033181, 25033260], [25033401, 25033448], [25034109, 25034274], [25043161, 25043248], [25044031, 25044163], [25049609, 25049734], [25051838, 25051995], [25052230, 25052414], [25058790, 25058886], [25060305, 25060443], [25064805, 25064966], [25066558, 25066732], [25067733, 25067871], [25068710, 25068860], [25072253, 25072367], [25073438, 25073514], [25074453, 25074520], [25075770, 25075972]]
ENST00000484989	[[25026109, 25026731], [25027724, 25027792], [25029154, 25029272]]	None
ENST00000480576	[[25030534, 25030616], [25033181, 25033260], [25033401, 25033620]]	None
NM_006437	[[24995068, 24995452], [25000603, 25000736], [25005514, 25005614], [25008532, 25009612], [25015983, 25016106], [25016727, 25016823], [25017787, 25017868], [25020818, 25020899], [25021153, 25021324], [25023855, 25023955], [25026543, 25026731], [25027724, 25027792], [25029154, 25029350], [25030478, 25030616], [25033181, 25033260], [25033401, 25033448], [25034109, 25034274], [25043161, 25043248], [25044031, 25044163], [25049609, 25049734], [25051838, 25051995], [25052230, 25052414], [25058790, 25058886], [25060305, 25060443], [25064805, 25064966], [25066558, 25066732], [25067733, 25067871], [25068710, 25068860], [25072253, 25072367], [25073438, 25073514], [25074453, 25074520], [25075770, 25075972], [25077782, 25077915], [25086843, 25086948]]	[[24995256, 24995452], [25000603, 25000736], [25005514, 25005614], [25008532, 25009612], [25015983, 25016106], [25016727, 25016823], [25017787, 25017868], [25020818, 25020899], [25021153, 25021324], [25023855, 25023955], [25026543, 25026731], [25027724, 25027792], [25029154, 25029350], [25030478, 25030616], [25033181, 25033260], [25033401, 25033448], [25034109, 25034274], [25043161, 25043248], [25044031, 25044163], [25049609, 25049734], [25051838, 25051995], [25052230, 25052414], [25058790, 25058886], [25060305, 25060443], [25064805, 25064966], [25066558, 25066732], [25067733, 25067871], [25068710, 25068860], [25072253, 25072367], [25073438, 25073514], [25074453, 25074520], [25075770, 25075972]]

Promoter

Chrom	Start	End	Description
chr13	25086879	25086929	CAGE_peak_1_at_PARP4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I024910	24910598	24912012	1.11	[{'connected_gene': 'NUP58', 'score': 6.12}, {'connected_gene': 'MTMR6', 'score': 5.56}, {'connected_gene': 'PARP4', 'score': 1.74}, {'connected_gene': 'PABPC3', 'score': 1.35}, {'connected_gene': 'CENPJ', 'score': 0.39}, {'connected_gene': 'GC13P024795', 'score': 0.1}, {'connected_gene': 'PIR31198', 'score': 0.1}]
chr13	GH13I024528	24528903	24529152	0.2	[{'connected_gene': 'RNF17', 'score': 9.87}, {'connected_gene': 'LOC101927375', 'score': 0.39}, {'connected_gene': 'PARP4', 'score': 0.37}, {'connected_gene': 'LOC105370117', 'score': 0.31}, {'connected_gene': 'TPTE2P6', 'score': 0.13}]
chr13	GH13I024667	24667776	24672911	1.1	[{'connected_gene': 'ATP12A', 'score': 15.89}, {'connected_gene': 'RNF17', 'score': 10.48}, {'connected_gene': 'PARP4', 'score': 10.23}, {'connected_gene': 'GC13P024570', 'score': 0.15}]
chr13	GH13I024629	24629654	24631502	0.86	[{'connected_gene': 'ATP12A', 'score': 11.28}, {'connected_gene': 'PARP4', 'score': 10.03}, {'connected_gene': 'TPTE2P6', 'score': 4.88}, {'connected_gene': 'GC13P024570', 'score': 0.21}]
chr13	GH13I024624	24624697	24627392	0.94	[{'connected_gene': 'TPTE2P6', 'score': 14.69}, {'connected_gene': 'ATP12A', 'score': 11.23}, {'connected_gene': 'PARP4', 'score': 10.31}, {'connected_gene': 'RNF17', 'score': 10.05}, {'connected_gene': 'GC13P024570', 'score': 0.22}]
chr13	GH13I024279	24279002	24281648	1.13	[{'connected_gene': 'SPATA13', 'score': 6.43}, {'connected_gene': 'PARP4', 'score': 2.22}, {'connected_gene': 'C1QTNF9', 'score': 0.31}, {'connected_gene': 'SPATA13-AS1', 'score': 0.31}, {'connected_gene': 'ENSG00000273167', 'score': 0.06}]
chr13	GH13I024050	24050084	24051380	1.22	[{'connected_gene': 'SPATA13', 'score': 11.56}, {'connected_gene': 'MIR2276', 'score': 11.51}, {'connected_gene': 'SPATA13-AS1', 'score': 10.79}, {'connected_gene': 'PARP4', 'score': 1.82}, {'connected_gene': 'PIR59399', 'score': 0.39}, {'connected_gene': 'ENSG00000273167', 'score': 0.19}, {'connected_gene': 'IPO7P2', 'score': 0.19}]
chr13	GH13I024063	24063002	24064961	1.07	[{'connected_gene': 'SPATA13', 'score': 11.63}, {'connected_gene': 'MIR2276', 'score': 11.6}, {'connected_gene': 'SPATA13-AS1', 'score': 10.24}, {'connected_gene': 'PARP4', 'score': 5.42}, {'connected_gene': 'PIR59399', 'score': 0.31}, {'connected_gene': 'IPO7P2', 'score': 0.22}, {'connected_gene': 'ENSG00000273167', 'score': 0.18}]
chr13	GH13I024269	24269875	24277172	2.49	[{'connected_gene': 'SPATA13', 'score': 556.02}, {'connected_gene': 'IPO7P2', 'score': 10.49}, {'connected_gene': 'TPTE2P6', 'score': 10.15}, {'connected_gene': 'PARP4', 'score': 3.25}, {'connected_gene': 'SPATA13-AS1', 'score': 0.37}, {'connected_gene': 'C1QTNF9', 'score': 0.29}, {'connected_gene': 'ENSG00000273167', 'score': 0.06}]
chr13	GH13I024715	24715947	24716778	0.31	[{'connected_gene': 'PARP4', 'score': 14.48}, {'connected_gene': 'RNF17', 'score': 10.33}, {'connected_gene': 'ATP12A', 'score': 4.88}, {'connected_gene': 'RPL26P34', 'score': 0.39}, {'connected_gene': 'LOC105370118', 'score': 0.34}]
chr13	GH13I024598	24598041	24598761	0.2	[{'connected_gene': 'PARP4', 'score': 9.62}, {'connected_gene': 'GC13P024570', 'score': 0.31}, {'connected_gene': 'ATP12A', 'score': 0.18}]
chr13	GH13I024450	24450583	24450752	0.2	[{'connected_gene': 'PARP4', 'score': 10.53}, {'connected_gene': 'TPTE2P6', 'score': 0.26}, {'connected_gene': 'LOC105370117', 'score': 0.23}]
chr13	GH13I024506	24506404	24506463	0.76	[{'connected_gene': 'PARP4', 'score': 550.44}, {'connected_gene': 'LOC105370117', 'score': 0.77}, {'connected_gene': 'TPTE2P6', 'score': 0.15}]
chr13	GH13I024511	24510201	24510400	0.31	[{'connected_gene': 'PARP4', 'score': 7.62}, {'connected_gene': 'LOC105370117', 'score': 0.44}, {'connected_gene': 'TPTE2P6', 'score': 0.15}]
chr13	GH13I024510	24510409	24513673	2.07	[{'connected_gene': 'PARP4', 'score': 563.4}, {'connected_gene': 'LOC105370117', 'score': 0.44}, {'connected_gene': 'TPTE2P6', 'score': 0.15}]
chr13	GH13I024508	24508181	24508544	0.27	[{'connected_gene': 'PARP4', 'score': 11.83}, {'connected_gene': 'LOC105370117', 'score': 0.44}, {'connected_gene': 'TPTE2P6', 'score': 0.15}]
chr13	GH13I024459	24459363	24459492	0.46	[{'connected_gene': 'PARP4', 'score': 10.28}, {'connected_gene': 'LOC105370117', 'score': 0.26}, {'connected_gene': 'TPTE2P6', 'score': 0.23}]
chr13	GH13I024505	24505192	24506194	0.73	[{'connected_gene': 'PARP4', 'score': 10.59}, {'connected_gene': 'LOC105370117', 'score': 0.77}, {'connected_gene': 'TPTE2P6', 'score': 0.15}]
chr13	GH13I024262	24262653	24268932	1.24	[{'connected_gene': 'PARP4', 'score': 10.7}, {'connected_gene': 'SPATA13-AS1', 'score': 0.39}, {'connected_gene': 'C1QTNF9', 'score': 0.26}, {'connected_gene': 'SPATA13', 'score': 0.06}, {'connected_gene': 'ENSG00000273167', 'score': 0.06}]
chr13	GH13I024495	24495263	24495412	0.43	[{'connected_gene': 'LOC105370117', 'score': 0.44}, {'connected_gene': 'PARP4', 'score': 0.37}, {'connected_gene': 'TPTE2P6', 'score': 0.17}]
chr13	GH13I024500	24500233	24501837	0.43	[{'connected_gene': 'LOC105370117', 'score': 550.77}, {'connected_gene': 'PARP4', 'score': 8.34}, {'connected_gene': 'TPTE2P6', 'score': 0.16}]
chr13	GH13I024502	24502307	24503731	0.82	[{'connected_gene': 'LOC105370117', 'score': 550.77}, {'connected_gene': 'PARP4', 'score': 11.28}, {'connected_gene': 'C1QTNF9', 'score': 5.2}, {'connected_gene': 'TPTE2P6', 'score': 0.16}]
chr13	GH13I024540	24540744	24542301	1	[{'connected_gene': 'LOC101927375', 'score': 550.77}, {'connected_gene': 'LOC105370295', 'score': 550.77}, {'connected_gene': 'TPTE2P6', 'score': 17.92}, {'connected_gene': 'PARP4', 'score': 11.87}, {'connected_gene': 'RNF17', 'score': 2.8}]
chr13	GH13I024074	24074390	24076869	1.18	[{'connected_gene': 'MIR2276', 'score': 11.1}, {'connected_gene': 'SPATA13', 'score': 11.09}, {'connected_gene': 'PARP4', 'score': 5.54}, {'connected_gene': 'PIR59399', 'score': 0.28}, {'connected_gene': 'IPO7P2', 'score': 0.25}, {'connected_gene': 'ENSG00000273167', 'score': 0.15}]