PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000392499	[[186256229, 186256757], [186257143, 186257386], [186262094, 186262144], [186264180, 186264491]]	[[186256484, 186256757], [186257143, 186257386], [186262094, 186262115]]
ENST00000460288	[[186256387, 186256757], [186257143, 186258309]]	None
ENST00000307944	[[186256387, 186256757], [186257143, 186257386], [186262094, 186262240]]	[[186256484, 186256757], [186257143, 186257386], [186262094, 186262115]]
NM_017541	[[186256227, 186256757], [186257143, 186257386], [186262094, 186262240]]	[[186256484, 186256757], [186257143, 186257386], [186262094, 186262115]]

Promoter

Chrom	Start	End	Description
chr3	186262166	186262170	CAGE_peak_1_at_CRYGS_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I186532	186532183	186535004	1.01	[{'connected_gene': 'ST6GAL1', 'score': 3.8}, {'connected_gene': 'TBCCD1', 'score': 2.41}, {'connected_gene': 'EIF4A2', 'score': 1.28}, {'connected_gene': 'CRYGS', 'score': 0.39}, {'connected_gene': 'LINC02052', 'score': 0.28}]
chr3	GH03I186525	186525402	186527040	1.16	[{'connected_gene': 'ST6GAL1', 'score': 5.36}, {'connected_gene': 'CRYGS', 'score': 0.34}, {'connected_gene': 'LINC02052', 'score': 0.29}]
chr3	GH03I186520	186520816	186522185	1.16	[{'connected_gene': 'TRA2B', 'score': 16.36}, {'connected_gene': 'TBCCD1', 'score': 15.05}, {'connected_gene': 'ENSG00000200418', 'score': 14.6}, {'connected_gene': 'RPS20P14', 'score': 12.76}, {'connected_gene': 'SNORA4', 'score': 11.21}, {'connected_gene': 'LINC02052', 'score': 0.31}, {'connected_gene': 'CRYGS', 'score': 0.31}]
chr3	GH03I186540	186540152	186541815	1.05	[{'connected_gene': 'TRA2B', 'score': 10.18}, {'connected_gene': 'EIF4A2', 'score': 9.91}, {'connected_gene': 'ENSG00000200418', 'score': 9.9}, {'connected_gene': 'SNORA63', 'score': 9.9}, {'connected_gene': 'SNORA81', 'score': 9.9}, {'connected_gene': 'RFC4', 'score': 9.9}, {'connected_gene': 'CRYGS', 'score': 0.44}, {'connected_gene': 'LINC02052', 'score': 0.25}]
chr3	GH03I186570	186569530	186571861	2.06	[{'connected_gene': 'TBCCD1', 'score': 591.33}, {'connected_gene': 'DNAJB11', 'score': 550.77}, {'connected_gene': 'TRA2B', 'score': 74.57}, {'connected_gene': 'ENSG00000200418', 'score': 32.15}, {'connected_gene': 'SNORA4', 'score': 27.24}, {'connected_gene': 'SNORA81', 'score': 20.56}, {'connected_gene': 'RFC4', 'score': 11.98}, {'connected_gene': 'RPS20P14', 'score': 10.31}, {'connected_gene': 'SNORA63', 'score': 9.73}, {'connected_gene': 'CRYGS', 'score': 5.07}, {'connected_gene': 'ENSG00000283149', 'score': 0.39}]
chr3	GH03I186501	186501777	186503874	0.43	[{'connected_gene': 'LINC02052', 'score': 0.44}, {'connected_gene': 'CRYGS', 'score': 0.26}]
chr3	GH03I186508	186508916	186510285	0.56	[{'connected_gene': 'LINC02052', 'score': 0.37}, {'connected_gene': 'CRYGS', 'score': 0.28}]
chr3	GH03I186518	186518136	186520287	0.99	[{'connected_gene': 'LINC02052', 'score': 0.31}, {'connected_gene': 'CRYGS', 'score': 0.31}]
chr3	GH03I186514	186514648	186516052	0.8	[{'connected_gene': 'LINC02052', 'score': 0.34}, {'connected_gene': 'CRYGS', 'score': 0.29}]
chr3	GH03I186588	186588296	186591531	1.07	[{'connected_gene': 'AHSG', 'score': 12.3}, {'connected_gene': 'SNORD2', 'score': 10.75}, {'connected_gene': 'EIF4A2', 'score': 10.75}, {'connected_gene': 'ENSG00000200418', 'score': 10.75}, {'connected_gene': 'SNORA63', 'score': 10.75}, {'connected_gene': 'SNORA81', 'score': 10.75}, {'connected_gene': 'RFC4', 'score': 10.4}, {'connected_gene': 'ENSG00000231724', 'score': 10.4}, {'connected_gene': 'FETUB', 'score': 10.38}, {'connected_gene': 'KNG1', 'score': 10.35}, {'connected_gene': 'HRG', 'score': 10.04}, {'connected_gene': 'DNAJB11', 'score': 5.51}, {'connected_gene': 'CRYGS', 'score': 5.07}, {'connected_gene': 'LOC100287402', 'score': 0.44}, {'connected_gene': 'ENSG00000283149', 'score': 0.44}, {'connected_gene': 'LOC105374258', 'score': 0.09}]
chr3	GH03I186544	186544370	186544429	0.76	[{'connected_gene': 'CRYGS', 'score': 550.77}, {'connected_gene': 'LINC02052', 'score': 0.23}]
chr3	GH03I186528	186528648	186529993	0.69	[{'connected_gene': 'CRYGS', 'score': 0.37}, {'connected_gene': 'LINC02052', 'score': 0.28}]