PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000508064	[[207818518, 207818675], [207850733, 207850913], [207851542, 207851642], [207857216, 207857302], [207867697, 207868096], [207870847, 207871024], [207871115, 207871218], [207872533, 207872619], [207874863, 207874963], [207881522, 207881608], [207890808, 207891036], [207896962, 207897048]]	[[207818578, 207818675], [207850733, 207850913], [207851542, 207851642], [207857216, 207857302], [207867697, 207868096], [207870847, 207871024], [207871115, 207871218], [207872533, 207872619], [207874863, 207874963], [207881522, 207881608], [207890808, 207891036], [207896962, 207897030]]
ENST00000530905	[[207842783, 207842910], [207850733, 207850913], [207851542, 207851642], [207857216, 207857302], [207883726, 207884163]]	None
ENST00000294997	[[207850804, 207850913], [207851542, 207851642], [207857216, 207857302], [207867697, 207868096], [207870847, 207871024], [207871115, 207871218], [207872533, 207872619], [207874863, 207874963], [207888656, 207888742], [207890808, 207891036], [207896962, 207896986], [207897977, 207898053], [207911748, 207911761]]	[[207850804, 207850913], [207851542, 207851642], [207857216, 207857302], [207867697, 207868096], [207870847, 207871024], [207871115, 207871218], [207872533, 207872619], [207874863, 207874963], [207888656, 207888663]]
ENST00000531844	[[207818457, 207818675], [207850733, 207850913], [207851542, 207851642], [207857216, 207857381]]	None
ENST00000430248	[[207842460, 207842561], [207850733, 207850913], [207851542, 207851612]]	None
NM_175710	[[207818457, 207818675], [207850733, 207850913], [207851542, 207851642], [207857216, 207857302], [207867697, 207868096], [207870847, 207871024], [207871115, 207871218], [207872533, 207872619], [207874863, 207874963], [207881522, 207881608], [207890808, 207891036], [207896962, 207897036]]	[[207818578, 207818675], [207850733, 207850913], [207851542, 207851642], [207857216, 207857302], [207867697, 207868096], [207870847, 207871024], [207871115, 207871218], [207872533, 207872619], [207874863, 207874963], [207881522, 207881608], [207890808, 207891036], [207896962, 207897030]]

Promoter

Chrom	Start	End	Description
chr1	207818460	207818496	CAGE_peak_1_at_CR1L_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I207728	207728636	207728785	0.77	[{'connected_gene': 'C4BPA', 'score': 5.85}, {'connected_gene': 'GC01P207741', 'score': 0.39}, {'connected_gene': 'GC01M207468', 'score': 0.39}, {'connected_gene': 'CR1L', 'score': 0.18}]
chr1	GH01I207846	207846792	207853800	1.45	[{'connected_gene': 'CD46', 'score': 26.9}, {'connected_gene': 'CD34', 'score': 11.45}, {'connected_gene': 'CR1L', 'score': 5.07}, {'connected_gene': 'PLXNA2', 'score': 2.66}, {'connected_gene': 'CR1', 'score': 1.99}, {'connected_gene': 'MIR29B2CHG', 'score': 0.37}, {'connected_gene': 'GC01P207829', 'score': 0.29}, {'connected_gene': 'PIR33548', 'score': 0.29}]
chr1	GH01I207841	207841647	207844455	0.52	[{'connected_gene': 'CD46', 'score': 17.03}, {'connected_gene': 'CD34', 'score': 10.45}, {'connected_gene': 'CR1L', 'score': 5.13}, {'connected_gene': 'GC01P207829', 'score': 0.34}, {'connected_gene': 'PIR33548', 'score': 0.34}, {'connected_gene': 'MIR29B2CHG', 'score': 0.31}]
chr1	GH01I207809	207809776	207810832	0.4	[{'connected_gene': 'CD46', 'score': 31.22}, {'connected_gene': 'CR1L', 'score': 5.14}, {'connected_gene': 'LOC148696', 'score': 0.44}, {'connected_gene': 'GC01M207807', 'score': 0.44}, {'connected_gene': 'MIR29B2CHG', 'score': 0.22}]
chr1	GH01I207830	207830575	207834199	1.25	[{'connected_gene': 'CD46', 'score': 28.3}, {'connected_gene': 'CR1L', 'score': 5.13}, {'connected_gene': 'GC01P207829', 'score': 0.39}, {'connected_gene': 'PIR33548', 'score': 0.39}, {'connected_gene': 'MIR29B2CHG', 'score': 0.28}]
chr1	GH01I207737	207737539	207739512	0.76	[{'connected_gene': 'CD46', 'score': 19.51}, {'connected_gene': 'CR1L', 'score': 5.26}, {'connected_gene': 'GC01P207741', 'score': 0.77}, {'connected_gene': 'GC01M207468', 'score': 0.34}]
chr1	GH01I207747	207747731	207754539	2.53	[{'connected_gene': 'CD46', 'score': 581.73}, {'connected_gene': 'CR1L', 'score': 5.31}, {'connected_gene': 'GC01P207741', 'score': 0.44}]
chr1	GH01I207712	207712796	207712945	0.31	[{'connected_gene': 'CD46', 'score': 8.68}, {'connected_gene': 'GC01M207468', 'score': 0.77}, {'connected_gene': 'LOC100422434', 'score': 0.77}, {'connected_gene': 'CR1L', 'score': 0.2}]
chr1	GH01I207816	207816676	207829145	2.33	[{'connected_gene': 'CD46', 'score': 33.85}, {'connected_gene': 'CDCA4P4', 'score': 12.72}, {'connected_gene': 'CD34', 'score': 10.98}, {'connected_gene': 'CR1', 'score': 8.15}, {'connected_gene': 'PLXNA2', 'score': 5.19}, {'connected_gene': 'CR1L', 'score': 4.66}, {'connected_gene': 'GC01P207829', 'score': 0.77}, {'connected_gene': 'LOC148696', 'score': 0.77}, {'connected_gene': 'PIR33548', 'score': 0.77}, {'connected_gene': 'MIR29B2CHG', 'score': 0.25}]
chr1	GH01I207648	207648455	207648607	0.78	[{'connected_gene': 'CR1L', 'score': 13.26}, {'connected_gene': 'C4BPA', 'score': 9.44}, {'connected_gene': 'CD46P1', 'score': 0.77}, {'connected_gene': 'CDCA4P3', 'score': 0.44}, {'connected_gene': 'GC01M207468', 'score': 0.2}]
chr1	GH01I207649	207649048	207650848	1.43	[{'connected_gene': 'CR1L', 'score': 23.12}, {'connected_gene': 'C4BPA', 'score': 9.44}, {'connected_gene': 'CR2', 'score': 4.27}, {'connected_gene': 'CD46P1', 'score': 0.77}, {'connected_gene': 'CDCA4P3', 'score': 0.44}, {'connected_gene': 'GC01M207468', 'score': 0.2}]
chr1	GH01I207644	207644476	207647108	2.17	[{'connected_gene': 'CR1L', 'score': 550.77}, {'connected_gene': 'CD46P1', 'score': 550.77}, {'connected_gene': 'C4BPA', 'score': 9.44}, {'connected_gene': 'CD46', 'score': 5.12}, {'connected_gene': 'CDCA4P3', 'score': 0.39}, {'connected_gene': 'GC01M207468', 'score': 0.2}]
chr1	GH01I207789	207789323	207791918	0.57	[{'connected_gene': 'CR1L', 'score': 5.15}, {'connected_gene': 'MIR29C', 'score': 0.39}, {'connected_gene': 'CDCA4P4', 'score': 0.31}, {'connected_gene': 'CD46', 'score': 0.28}, {'connected_gene': 'MIR29B2CHG', 'score': 0.18}]
chr1	GH01I207796	207796980	207798085	1.02	[{'connected_gene': 'CR1L', 'score': 5.14}, {'connected_gene': 'MIR29C', 'score': 0.77}, {'connected_gene': 'CDCA4P4', 'score': 0.29}, {'connected_gene': 'MIR29B2CHG', 'score': 0.19}]
chr1	GH01I207834	207834605	207837804	0.2	[{'connected_gene': 'CR1L', 'score': 5.12}, {'connected_gene': 'GC01P207829', 'score': 0.37}, {'connected_gene': 'PIR33548', 'score': 0.37}, {'connected_gene': 'MIR29B2CHG', 'score': 0.29}]
chr1	GH01I207838	207838006	207839473	1.14	[{'connected_gene': 'CR1L', 'score': 5.12}, {'connected_gene': 'GC01P207829', 'score': 0.37}, {'connected_gene': 'PIR33548', 'score': 0.37}, {'connected_gene': 'MIR29B2CHG', 'score': 0.29}]
chr1	GH01I207711	207711416	207711545	0.74	[{'connected_gene': 'LOC100422434', 'score': 550.77}, {'connected_gene': 'GC01M207468', 'score': 0.77}, {'connected_gene': 'CR1L', 'score': 0.2}]
chr1	GH01I207707	207707125	207708279	0.97	[{'connected_gene': 'RNA5SP534', 'score': 550.77}, {'connected_gene': 'CD46', 'score': 9.79}, {'connected_gene': 'GC01M207468', 'score': 0.44}, {'connected_gene': 'CDCA4P3', 'score': 0.25}, {'connected_gene': 'CR1L', 'score': 0.21}]
chr1	GH01I207698	207698956	207699105	0.8	[{'connected_gene': 'RNA5SP534', 'score': 0.44}, {'connected_gene': 'GC01M207468', 'score': 0.37}, {'connected_gene': 'CDCA4P3', 'score': 0.26}, {'connected_gene': 'CR1L', 'score': 0.23}]
chr1	GH01I207691	207691996	207692145	0.49	[{'connected_gene': 'RNA5SP534', 'score': 0.37}, {'connected_gene': 'GC01M207468', 'score': 0.34}, {'connected_gene': 'CDCA4P3', 'score': 0.29}, {'connected_gene': 'CR1L', 'score': 0.25}]