PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000454765	[[72416118, 72416523], [72419132, 72419840], [72424216, 72424358], [72427364, 72427644]]	[[72419200, 72419840], [72424216, 72424358], [72427364, 72427557]]
ENST00000287773	[[72416395, 72416523], [72419132, 72419840], [72424216, 72424358], [72427367, 72427636]]	[[72419200, 72419840], [72424216, 72424358], [72427367, 72427557]]
NM_001161342	[[72416387, 72416523], [72419132, 72419840], [72424216, 72424358], [72427367, 72427644]]	[[72419200, 72419840], [72424216, 72424358], [72427367, 72427557]]
NM_173490	[[72416387, 72416523], [72419132, 72419840], [72424216, 72424358], [72427364, 72427644]]	[[72419200, 72419840], [72424216, 72424358], [72427364, 72427557]]

Promoter

Chrom	Start	End	Description
chr5	72416387	72416409	CAGE_peak_1_at_TMEM171_5end
chr5	72416428	72416441	CAGE_peak_3_at_TMEM171_5end
chr5	72416466	72416490	CAGE_peak_2_at_TMEM171_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I073029	73029624	73032773	1.13	[{'connected_gene': 'ANKRA2', 'score': 62.96}, {'connected_gene': 'ENSG00000271926', 'score': 12.06}, {'connected_gene': 'ENSG00000272525', 'score': 11.33}, {'connected_gene': 'UTP15', 'score': 11.32}, {'connected_gene': 'TMEM171', 'score': 10.86}, {'connected_gene': 'ENSG00000272081', 'score': 8.04}, {'connected_gene': 'FCHO2', 'score': 7.06}, {'connected_gene': 'LOC728549', 'score': 0.44}, {'connected_gene': 'GC05P073101', 'score': 0.2}]
chr5	GH05I073418	73418996	73420543	0.76	[{'connected_gene': 'ANKRA2', 'score': 11.83}, {'connected_gene': 'LINC01386', 'score': 10.82}, {'connected_gene': 'TMEM171', 'score': 10.74}, {'connected_gene': 'BTF3', 'score': 4.84}, {'connected_gene': 'FOXD1-AS1', 'score': 0.31}, {'connected_gene': 'GC05P073385', 'score': 0.29}]
chr5	GH05I073201	73201601	73202454	1.04	[{'connected_gene': 'LOC340090', 'score': 550.77}, {'connected_gene': 'ANKRA2', 'score': 15.88}, {'connected_gene': 'UTP15', 'score': 12.08}, {'connected_gene': 'TMEM174', 'score': 11.87}, {'connected_gene': 'TMEM171', 'score': 10.66}, {'connected_gene': 'TNPO1', 'score': 10.18}, {'connected_gene': 'LINC01386', 'score': 9.94}, {'connected_gene': 'ENSG00000249743', 'score': 0.39}]
chr5	GH05I073181	73181923	73184677	0.54	[{'connected_gene': 'TMEM171', 'score': 10.66}, {'connected_gene': 'UTP15', 'score': 5.11}, {'connected_gene': 'TMEM174', 'score': 0.39}, {'connected_gene': 'LOC340090', 'score': 0.37}]
chr5	GH05I073039	73039174	73039363	0.49	[{'connected_gene': 'TMEM171', 'score': 10.33}, {'connected_gene': 'LOC728549', 'score': 0.37}, {'connected_gene': 'GC05P073101', 'score': 0.21}, {'connected_gene': 'FCHO2', 'score': 0.18}]
chr5	GH05I073114	73114714	73121237	2	[{'connected_gene': 'TMEM171', 'score': 560.92}, {'connected_gene': 'ANKRA2', 'score': 15.88}, {'connected_gene': 'UTP15', 'score': 12.08}, {'connected_gene': 'TNPO1', 'score': 10.18}, {'connected_gene': 'ENSG00000249085', 'score': 7.44}, {'connected_gene': 'ARHGEF28', 'score': 5.81}, {'connected_gene': 'GC05M073090', 'score': 0.77}]
chr5	GH05I073083	73083194	73083343	0.64	[{'connected_gene': 'TMEM171', 'score': 11.57}, {'connected_gene': 'TMEM174', 'score': 10.86}, {'connected_gene': 'GC05P073101', 'score': 0.37}, {'connected_gene': 'LOC728549', 'score': 0.21}, {'connected_gene': 'FCHO2', 'score': 0.13}]
chr5	GH05I073122	73122149	73123690	0.86	[{'connected_gene': 'TMEM171', 'score': 11.22}, {'connected_gene': 'TMEM174', 'score': 10.89}, {'connected_gene': 'FCHO2', 'score': 5.86}, {'connected_gene': 'GC05P073146', 'score': 0.34}]
chr5	GH05I073094	73094074	73094223	0.54	[{'connected_gene': 'TMEM171', 'score': 11.17}, {'connected_gene': 'TMEM174', 'score': 10.15}, {'connected_gene': 'LINC01386', 'score': 10.02}, {'connected_gene': 'GC05P073101', 'score': 0.44}, {'connected_gene': 'GC05M073090', 'score': 0.34}, {'connected_gene': 'LOC728549', 'score': 0.19}]
chr5	GH05I073187	73187995	73190449	0.9	[{'connected_gene': 'TMEM171', 'score': 10.74}, {'connected_gene': 'LINC01386', 'score': 9.98}, {'connected_gene': 'ENSG00000184084', 'score': 4.3}, {'connected_gene': 'LOC340090', 'score': 0.39}, {'connected_gene': 'TMEM174', 'score': 0.37}]
chr5	GH05I073160	73160314	73160403	0.78	[{'connected_gene': 'TMEM171', 'score': 10.56}, {'connected_gene': 'LOC101060067', 'score': 0.44}, {'connected_gene': 'TMEM174', 'score': 0.39}]
chr5	GH05I073129	73129492	73130089	0.2	[{'connected_gene': 'TMEM171', 'score': 0.44}, {'connected_gene': 'GC05P073146', 'score': 0.37}]
chr5	GH05I073135	73135437	73136725	0.52	[{'connected_gene': 'LOC105379030', 'score': 0.39}, {'connected_gene': 'GC05P073146', 'score': 0.39}, {'connected_gene': 'TMEM171', 'score': 0.37}]
chr5	GH05I073256	73256974	73257123	0.2	[{'connected_gene': 'LINC01386', 'score': 10.48}, {'connected_gene': 'TMEM171', 'score': 9.95}, {'connected_gene': 'LOC105379031', 'score': 0.37}, {'connected_gene': 'ENSG00000249743', 'score': 0.26}]
chr5	GH05I073369	73369271	73372642	0.94	[{'connected_gene': 'LINC01386', 'score': 10.32}, {'connected_gene': 'TMEM171', 'score': 10.12}, {'connected_gene': 'BTF3', 'score': 7.75}, {'connected_gene': 'ENSG00000249149', 'score': 0.39}, {'connected_gene': 'GC05P073340', 'score': 0.29}]
chr5	GH05I073373	73373666	73375431	0.66	[{'connected_gene': 'LINC01386', 'score': 10.33}, {'connected_gene': 'TMEM171', 'score': 10.12}, {'connected_gene': 'BTF3', 'score': 7.75}, {'connected_gene': 'ENSG00000249149', 'score': 0.44}, {'connected_gene': 'GC05P073340', 'score': 0.28}]
chr5	GH05I073137	73137623	73138587	0.38	[{'connected_gene': 'ENSG00000271926', 'score': 4.55}, {'connected_gene': 'GC05P073146', 'score': 0.44}, {'connected_gene': 'LOC105379030', 'score': 0.39}, {'connected_gene': 'TMEM171', 'score': 0.37}]