PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000296666	[[126853300, 126853468], [126859151, 126859274], [126860222, 126860612], [126862309, 126862470], [126865985, 126866088], [126869314, 126869478], [126874731, 126874835], [126883510, 126883613], [126887398, 126890781]]	[[126859171, 126859274], [126860222, 126860612], [126862309, 126862470], [126865985, 126866088], [126869314, 126869478], [126874731, 126874835], [126883510, 126883613], [126887398, 126887608]]
ENST00000442138	[[126853342, 126853468], [126859151, 126859274], [126860222, 126860612], [126862309, 126862470], [126865985, 126866088], [126869314, 126869478], [126874731, 126874835], [126883510, 126887843]]	[[126859171, 126859274], [126860222, 126860612], [126862309, 126862470], [126865985, 126866088], [126869314, 126869478], [126874731, 126874835], [126883510, 126883742]]
ENST00000512635	[[126853347, 126853468], [126859151, 126859274], [126860222, 126860612], [126862309, 126862470], [126865985, 126866088], [126869314, 126869478], [126874731, 126874835], [126883510, 126883613], [126887398, 126887570], [126889488, 126890773]]	[[126859171, 126859274], [126860222, 126860612], [126862309, 126862470], [126865985, 126866088], [126869314, 126869478], [126874731, 126874835], [126883510, 126883613], [126887398, 126887570], [126889488, 126889577]]
ENST00000512871	[[126853331, 126853468], [126859151, 126859717]]	None
ENST00000507774	[[126853637, 126853691], [126859151, 126859800]]	None
ENST00000513427	[[126883526, 126883613], [126887398, 126888148]]	None
NM_001286808	[[126853300, 126853468], [126859151, 126859274], [126860222, 126860612], [126862309, 126862470], [126865985, 126866088], [126869314, 126869478], [126874731, 126874835], [126883510, 126883613], [126887398, 126887570], [126889488, 126890781]]	[[126859171, 126859274], [126860222, 126860612], [126862309, 126862470], [126865985, 126866088], [126869314, 126869478], [126874731, 126874835], [126883510, 126883613], [126887398, 126887570], [126889488, 126889577]]
NM_130809	[[126853300, 126853468], [126859151, 126859274], [126860222, 126860612], [126862309, 126862470], [126865985, 126866088], [126869314, 126869478], [126874731, 126874835], [126883510, 126883613], [126887398, 126890781]]	[[126859171, 126859274], [126860222, 126860612], [126862309, 126862470], [126865985, 126866088], [126869314, 126869478], [126874731, 126874835], [126883510, 126883613], [126887398, 126887608]]

Promoter

Chrom	Start	End	Description
chr5	126853316	126853374	CAGE_peak_1_at_PRRC1_5end
chr5	126853376	126853407	CAGE_peak_2_at_PRRC1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I128081	128081157	128086201	2.25	[{'connected_gene': 'LINC01184', 'score': 570.88}, {'connected_gene': 'SLC12A2', 'score': 550.77}, {'connected_gene': 'PRRC1', 'score': 31.29}, {'connected_gene': 'CCDC192', 'score': 11.06}, {'connected_gene': 'GC05M128064', 'score': 0.21}]
chr5	GH05I127072	127072644	127074080	1.95	[{'connected_gene': 'C5orf63', 'score': 558.73}, {'connected_gene': 'ENSG00000279446', 'score': 550.77}, {'connected_gene': 'MARCH3', 'score': 61.56}, {'connected_gene': 'PRRC1', 'score': 11.04}]
chr5	GH05I126759	126759808	126763556	1.51	[{'connected_gene': 'PRRC1', 'score': 21.04}, {'connected_gene': 'CCDC192', 'score': 12.1}, {'connected_gene': 'PHAX', 'score': 10.57}, {'connected_gene': 'ALDH7A1', 'score': 6.34}, {'connected_gene': 'RNU6-752P', 'score': 0.44}, {'connected_gene': 'LMNB1', 'score': 0.39}, {'connected_gene': 'LMNB1-DT', 'score': 0.37}]
chr5	GH05I127847	127847994	127848680	0.62	[{'connected_gene': 'PRRC1', 'score': 24.18}, {'connected_gene': 'CCDC192', 'score': 12.18}, {'connected_gene': 'ENSG00000250603', 'score': 0.44}, {'connected_gene': 'CUL1P1', 'score': 0.21}]
chr5	GH05I127705	127705001	127705870	0.98	[{'connected_gene': 'PRRC1', 'score': 52.71}, {'connected_gene': 'LINC01184', 'score': 11.57}, {'connected_gene': 'CTXN3', 'score': 11.2}, {'connected_gene': 'CCDC192', 'score': 10.84}, {'connected_gene': 'GC05M127785', 'score': 0.18}]
chr5	GH05I127206	127206349	127206558	0.9	[{'connected_gene': 'PRRC1', 'score': 13.03}, {'connected_gene': 'LINC01184', 'score': 11.54}, {'connected_gene': 'PHAX', 'score': 11.02}, {'connected_gene': 'PIR43801', 'score': 0.44}, {'connected_gene': 'GC05M127173', 'score': 0.39}]
chr5	GH05I128201	128201001	128201800	1.06	[{'connected_gene': 'PRRC1', 'score': 14.1}, {'connected_gene': 'LINC01184', 'score': 6.3}, {'connected_gene': 'GC05P128186', 'score': 0.39}, {'connected_gene': 'GC05P128268', 'score': 0.2}]
chr5	GH05I127357	127357695	127359709	0.54	[{'connected_gene': 'PRRC1', 'score': 15.53}, {'connected_gene': 'PHAX', 'score': 10.5}, {'connected_gene': 'MARCH3', 'score': 7.51}, {'connected_gene': 'LOC105379199', 'score': 0.2}, {'connected_gene': 'ENSG00000249577', 'score': 0.14}, {'connected_gene': 'MEGF10', 'score': 0.13}]
chr5	GH05I127081	127080249	127080458	0.8	[{'connected_gene': 'PRRC1', 'score': 14.11}, {'connected_gene': 'MARCH3', 'score': 10.09}, {'connected_gene': 'ENSG00000279446', 'score': 0.44}, {'connected_gene': 'MRPS5P3', 'score': 0.21}]
chr5	GH05I127516	127516881	127519201	1.99	[{'connected_gene': 'PRRC1', 'score': 557.42}, {'connected_gene': 'ENSG00000282925', 'score': 0.19}]
chr5	GH05I126970	126970029	126973782	1.39	[{'connected_gene': 'MARCH3', 'score': 66.01}, {'connected_gene': 'PRRC1', 'score': 13.44}, {'connected_gene': 'C5orf63', 'score': 4.37}, {'connected_gene': 'GC05M127022', 'score': 0.23}, {'connected_gene': 'GC05M126868', 'score': 0.15}]
chr5	GH05I127006	127006260	127008869	0.66	[{'connected_gene': 'MARCH3', 'score': 12.44}, {'connected_gene': 'PRRC1', 'score': 12.09}, {'connected_gene': 'GC05M127022', 'score': 0.37}, {'connected_gene': 'GC05M126868', 'score': 0.12}]
chr5	GH05I127001	127001139	127003319	1.11	[{'connected_gene': 'MARCH3', 'score': 12.34}, {'connected_gene': 'PRRC1', 'score': 10.71}, {'connected_gene': 'GC05M127022', 'score': 0.34}, {'connected_gene': 'GC05M126868', 'score': 0.12}]
chr5	GH05I127290	127290000	127292233	2.07	[{'connected_gene': 'LOC105379199', 'score': 550.77}, {'connected_gene': 'MEGF10', 'score': 550.21}, {'connected_gene': 'PRRC1', 'score': 13.04}, {'connected_gene': 'MARCH3', 'score': 11.47}, {'connected_gene': 'LOC105379198', 'score': 0.21}]