PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000309733	[[113066552, 113066889], [113107848, 113116412]]	[[113066736, 113066889], [113107848, 113108094]]

Promoter

Chrom	Start	End	Description
chr4	113066552	113066563	CAGE_peak_3_at_C4orf32_5end
chr4	113066567	113066598	CAGE_peak_2_at_C4orf32_5end
chr4	113066602	113066620	CAGE_peak_1_at_C4orf32_5end
chr4	113066622	113066627	CAGE_peak_4_at_C4orf32_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I112282	112282560	112290146	2.5	[{'connected_gene': 'TIFA', 'score': 576.63}, {'connected_gene': 'ALPK1', 'score': 552.4}, {'connected_gene': 'FAM241A', 'score': 14.45}, {'connected_gene': 'AP1AR', 'score': 14.02}, {'connected_gene': 'LOC109864269', 'score': 13.4}, {'connected_gene': 'ENSG00000250966', 'score': 11.17}, {'connected_gene': 'RTEL1P1', 'score': 5.38}, {'connected_gene': 'LARP7', 'score': 2.98}, {'connected_gene': 'ZGRF1', 'score': 1.4}, {'connected_gene': 'GC04P112321', 'score': 0.28}]
chr4	GH04I112279	112279111	112280600	1.46	[{'connected_gene': 'TIFA', 'score': 20.7}, {'connected_gene': 'FAM241A', 'score': 10.52}, {'connected_gene': 'ENSG00000272567', 'score': 0.44}, {'connected_gene': 'ALPK1', 'score': 0.44}]
chr4	GH04I112276	112276642	112278687	0.77	[{'connected_gene': 'TIFA', 'score': 20.0}, {'connected_gene': 'FAM241A', 'score': 10.52}, {'connected_gene': 'ENSG00000272567', 'score': 0.77}, {'connected_gene': 'ALPK1', 'score': 0.44}]
chr4	GH04I112259	112259862	112260150	0.22	[{'connected_gene': 'TIFA', 'score': 17.58}, {'connected_gene': 'FAM241A', 'score': 10.56}, {'connected_gene': 'LOC105377372', 'score': 9.89}, {'connected_gene': 'NEUROG2', 'score': 9.89}, {'connected_gene': 'ZGRF1', 'score': 5.02}, {'connected_gene': 'AP1AR', 'score': 4.71}, {'connected_gene': 'ENSG00000272567', 'score': 0.39}]
chr4	GH04I112141	112141201	112141400	0.31	[{'connected_gene': 'ZGRF1', 'score': 4.64}, {'connected_gene': 'FAM241A', 'score': 0.77}, {'connected_gene': 'LOC105377370', 'score': 0.39}]
chr4	GH04I112082	112082416	112085863	1.27	[{'connected_gene': 'FAM241A', 'score': 16.69}, {'connected_gene': 'TIFA', 'score': 2.01}, {'connected_gene': 'TUBB8P3', 'score': 0.44}, {'connected_gene': 'RPS12P8', 'score': 0.29}]
chr4	GH04I112213	112213708	112215000	0.84	[{'connected_gene': 'FAM241A', 'score': 19.03}, {'connected_gene': 'TIFA', 'score': 4.47}, {'connected_gene': 'ENSG00000260526', 'score': 0.37}, {'connected_gene': 'GC04P112172', 'score': 0.26}]
chr4	GH04I112251	112251183	112251555	0.25	[{'connected_gene': 'FAM241A', 'score': 10.39}, {'connected_gene': 'NEUROG2', 'score': 1.4}, {'connected_gene': 'AP1AR', 'score': 0.37}, {'connected_gene': 'ENSG00000272567', 'score': 0.34}]
chr4	GH04I111990	111990991	111992517	1.22	[{'connected_gene': 'FAM241A', 'score': 14.58}, {'connected_gene': 'AP1AR', 'score': 2.61}, {'connected_gene': 'TIFA', 'score': 1.61}, {'connected_gene': 'PIR60785', 'score': 0.39}, {'connected_gene': 'ENSG00000249815', 'score': 0.18}, {'connected_gene': 'LOC105377369', 'score': 0.11}]
chr4	GH04I111989	111989669	111990594	0.2	[{'connected_gene': 'FAM241A', 'score': 12.15}, {'connected_gene': 'AP1AR', 'score': 8.36}, {'connected_gene': 'PIR60785', 'score': 0.39}, {'connected_gene': 'ENSG00000249815', 'score': 0.18}, {'connected_gene': 'LOC105377369', 'score': 0.11}]
chr4	GH04I112270	112270258	112271973	0.77	[{'connected_gene': 'FAM241A', 'score': 10.41}, {'connected_gene': 'ENSG00000272567', 'score': 0.77}, {'connected_gene': 'AP1AR', 'score': 0.28}]
chr4	GH04I112144	112144807	112148138	2.19	[{'connected_gene': 'FAM241A', 'score': 578.8}, {'connected_gene': 'ZGRF1', 'score': 5.53}, {'connected_gene': 'TIFA', 'score': 4.23}, {'connected_gene': 'LARP7', 'score': 3.26}, {'connected_gene': 'AP1AR', 'score': 3.23}, {'connected_gene': 'RPL36AP19', 'score': 0.34}]
chr4	GH04I112112	112112095	112114060	1.16	[{'connected_gene': 'FAM241A', 'score': 17.62}, {'connected_gene': 'ZGRF1', 'score': 4.48}, {'connected_gene': 'RPS12P8', 'score': 0.77}, {'connected_gene': 'TUBB8P3', 'score': 0.28}]
chr4	GH04I112153	112153137	112153806	1	[{'connected_gene': 'FAM241A', 'score': 18.52}, {'connected_gene': 'ZGRF1', 'score': 4.47}, {'connected_gene': 'RPL36AP19', 'score': 0.37}]
chr4	GH04I112167	112167225	112168842	0.65	[{'connected_gene': 'FAM241A', 'score': 17.88}, {'connected_gene': 'ZGRF1', 'score': 5.16}, {'connected_gene': 'RPL36AP19', 'score': 0.77}]
chr4	GH04I112099	112099785	112099914	0.74	[{'connected_gene': 'FAM241A', 'score': 11.85}, {'connected_gene': 'RPS12P8', 'score': 0.37}, {'connected_gene': 'TUBB8P3', 'score': 0.34}]
chr4	GH04I112100	112100025	112100114	0.72	[{'connected_gene': 'FAM241A', 'score': 28.3}, {'connected_gene': 'RPS12P8', 'score': 0.37}, {'connected_gene': 'TUBB8P3', 'score': 0.34}]
chr4	GH04I112127	112127601	112127800	0.31	[{'connected_gene': 'FAM241A', 'score': 26.95}, {'connected_gene': 'LOC105377370', 'score': 0.77}, {'connected_gene': 'RPS12P8', 'score': 0.39}]
chr4	GH04I111959	111959200	111959601	0.72	[{'connected_gene': 'FAM241A', 'score': 8.23}, {'connected_gene': 'PIR60785', 'score': 0.26}, {'connected_gene': 'ENSG00000249815', 'score': 0.14}, {'connected_gene': 'LOC105377369', 'score': 0.14}]
chr4	GH04I111961	111960485	111960634	0.72	[{'connected_gene': 'FAM241A', 'score': 8.53}, {'connected_gene': 'PIR60785', 'score': 0.26}, {'connected_gene': 'ENSG00000249815', 'score': 0.14}, {'connected_gene': 'LOC105377369', 'score': 0.14}]
chr4	GH04I111985	111985414	111986567	0.31	[{'connected_gene': 'FAM241A', 'score': 9.34}, {'connected_gene': 'PIR60785', 'score': 0.37}, {'connected_gene': 'ENSG00000249815', 'score': 0.17}, {'connected_gene': 'LOC105377369', 'score': 0.12}]
chr4	GH04I112214	112213201	112213600	0.38	[{'connected_gene': 'FAM241A', 'score': 11.24}, {'connected_gene': 'ENSG00000260526', 'score': 0.37}, {'connected_gene': 'GC04P112172', 'score': 0.26}]
chr4	GH04I112224	112224085	112224523	0.2	[{'connected_gene': 'FAM241A', 'score': 11.14}, {'connected_gene': 'ENSG00000260526', 'score': 0.44}, {'connected_gene': 'GC04P112172', 'score': 0.23}]
chr4	GH04I111209	111209820	111211229	0.2	[{'connected_gene': 'FAM241A', 'score': 4.57}, {'connected_gene': 'GC04P111204', 'score': 0.44}, {'connected_gene': 'GC04P111332', 'score': 0.13}]
chr4	GH04I112199	112199145	112199294	0.57	[{'connected_gene': 'FAM241A', 'score': 11.5}, {'connected_gene': 'GC04P112172', 'score': 0.31}, {'connected_gene': 'ENSG00000260526', 'score': 0.29}]
chr4	GH04I112272	112272865	112274442	0.89	[{'connected_gene': 'ENSG00000272567', 'score': 550.77}, {'connected_gene': 'TIFA', 'score': 18.9}, {'connected_gene': 'FAM241A', 'score': 10.41}, {'connected_gene': 'ALPK1', 'score': 0.39}]
chr4	GH04I112173	112173490	112175052	0.75	[{'connected_gene': 'GC04P112172', 'score': 0.77}, {'connected_gene': 'FAM241A', 'score': 0.31}, {'connected_gene': 'ENSG00000260526', 'score': 0.22}]
chr4	GH04I112168	112168865	112171695	1.12	[{'connected_gene': 'GC04P112172', 'score': 550.77}, {'connected_gene': 'RPL36AP19', 'score': 550.77}, {'connected_gene': 'FAM241A', 'score': 26.62}, {'connected_gene': 'TIFA', 'score': 4.15}]