PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000377049	[[10509775, 10510379], [10511433, 10511959]]	[[10510280, 10510379], [10511433, 10511652]]
ENST00000320498	[[10509970, 10510379], [10511433, 10511955]]	[[10510130, 10510379], [10511433, 10511652]]
NM_001302	[[10509775, 10510379], [10511433, 10512060]]	[[10510280, 10510379], [10511433, 10511652]]

Promoter

Chrom	Start	End	Description
chr1	10510081	10510095	CAGE_peak_4_at_CORT_5end
chr1	10510155	10510176	CAGE_peak_3_at_CORT_5end
chr1	10510186	10510203	CAGE_peak_2_at_CORT_5end
chr1	10510205	10510225	CAGE_peak_1_at_CORT_5end
chr1	10510237	10510249	CAGE_peak_6_at_CORT_5end
chr1	10510262	10510271	CAGE_peak_7_at_CORT_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I010494	10494614	10499279	1.55	[{'connected_gene': 'PEX14', 'score': 19.76}, {'connected_gene': 'DFFA', 'score': 12.01}, {'connected_gene': 'CENPS-CORT', 'score': 11.73}, {'connected_gene': 'CENPS', 'score': 11.73}, {'connected_gene': 'CORT', 'score': 11.64}, {'connected_gene': 'ENSG00000203469', 'score': 11.25}, {'connected_gene': 'ENSG00000271989', 'score': 8.47}, {'connected_gene': 'PGD', 'score': 6.9}, {'connected_gene': 'GC01P010513', 'score': 0.37}]
chr1	GH01I010358	10358413	10359687	0.31	[{'connected_gene': 'PGD', 'score': 79.05}, {'connected_gene': 'CENPS', 'score': 10.93}, {'connected_gene': 'CORT', 'score': 10.9}, {'connected_gene': 'PEX14', 'score': 9.84}, {'connected_gene': 'DFFA', 'score': 9.84}, {'connected_gene': 'KIF1B', 'score': 7.89}, {'connected_gene': 'LOC105376725', 'score': 0.44}, {'connected_gene': 'RN7SL731P', 'score': 0.23}]
chr1	GH01I010432	10432475	10434533	0.52	[{'connected_gene': 'PGD', 'score': 18.38}, {'connected_gene': 'ENSG00000271989', 'score': 0.77}, {'connected_gene': 'CENPS', 'score': 0.77}, {'connected_gene': 'CENPS-CORT', 'score': 0.77}, {'connected_gene': 'CORT', 'score': 0.37}]
chr1	GH01I010351	10351755	10354316	0.56	[{'connected_gene': 'PGD', 'score': 86.47}, {'connected_gene': 'KIF1B', 'score': 19.66}, {'connected_gene': 'CENPS', 'score': 10.96}, {'connected_gene': 'CORT', 'score': 10.93}, {'connected_gene': 'RNU6-37P', 'score': 10.9}, {'connected_gene': 'RNU6-828P', 'score': 9.97}, {'connected_gene': 'LOC105376725', 'score': 0.39}, {'connected_gene': 'RN7SL731P', 'score': 0.25}]
chr1	GH01I010436	10436823	10437018	0.48	[{'connected_gene': 'PGD', 'score': 17.53}, {'connected_gene': 'KIF1B', 'score': 1.28}, {'connected_gene': 'ENSG00000271989', 'score': 0.44}, {'connected_gene': 'CENPS', 'score': 0.44}, {'connected_gene': 'CENPS-CORT', 'score': 0.44}, {'connected_gene': 'CORT', 'score': 0.39}]
chr1	GH01I010413	10413905	10416965	1.35	[{'connected_gene': 'PGD', 'score': 67.21}, {'connected_gene': 'CORT', 'score': 12.15}, {'connected_gene': 'PEX14', 'score': 10.61}, {'connected_gene': 'DFFA', 'score': 10.61}, {'connected_gene': 'CENPS', 'score': 0.39}, {'connected_gene': 'CENPS-CORT', 'score': 0.39}]
chr1	GH01I010283	10283289	10284230	0.64	[{'connected_gene': 'KIF1B', 'score': 11.97}, {'connected_gene': 'PGD', 'score': 10.75}, {'connected_gene': 'RNU6-828P', 'score': 10.7}, {'connected_gene': 'CENPS', 'score': 10.15}, {'connected_gene': 'CORT', 'score': 10.14}, {'connected_gene': 'DFFA', 'score': 9.58}, {'connected_gene': 'PEX14', 'score': 9.58}, {'connected_gene': 'UBE4B', 'score': 9.55}, {'connected_gene': 'GC01P010298', 'score': 0.37}, {'connected_gene': 'GC01M010233', 'score': 0.25}]
chr1	GH01I010449	10449981	10452175	1.08	[{'connected_gene': 'CORT', 'score': 550.77}, {'connected_gene': 'PGD', 'score': 25.11}, {'connected_gene': 'ENSG00000271989', 'score': 16.18}, {'connected_gene': 'CENPS-CORT', 'score': 12.32}, {'connected_gene': 'CENPS', 'score': 12.32}, {'connected_gene': 'DFFA', 'score': 11.58}, {'connected_gene': 'PEX14', 'score': 11.58}, {'connected_gene': 'C1orf127', 'score': 9.6}, {'connected_gene': 'ENSG00000203469', 'score': 0.44}]
chr1	GH01I010450	10449613	10449672	0.5	[{'connected_gene': 'CORT', 'score': 550.77}, {'connected_gene': 'ENSG00000271989', 'score': 15.9}, {'connected_gene': 'CENPS-CORT', 'score': 0.37}]