PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000264952	[[141496989, 141497738], [141499215, 141499653], [141526486, 141526761], [141535555, 141537332]]	[[141497126, 141497738], [141499215, 141499653], [141526486, 141526761], [141535555, 141535892]]
NM_139209	[[141497042, 141497738], [141499215, 141499653], [141526486, 141526761], [141535555, 141535892]]	[[141497126, 141497738], [141499215, 141499653], [141526486, 141526761], [141535555, 141535892]]

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I141736	141736964	141742920	2.34	[{'connected_gene': 'RNF7', 'score': 561.84}, {'connected_gene': 'RASA2', 'score': 14.48}, {'connected_gene': 'ATP1B3', 'score': 11.61}, {'connected_gene': 'ATP1B3-AS1', 'score': 10.99}, {'connected_gene': 'GRK7', 'score': 10.82}, {'connected_gene': 'RNU6-509P', 'score': 10.48}, {'connected_gene': 'ATR', 'score': 9.74}]
chr3	GH03I141689	141689801	141691054	0.31	[{'connected_gene': 'RNF7', 'score': 11.89}, {'connected_gene': 'ATP1B3', 'score': 10.61}, {'connected_gene': 'GRK7', 'score': 10.39}, {'connected_gene': 'TPT1P3', 'score': 0.37}, {'connected_gene': 'LOC646730', 'score': 0.29}]
chr3	GH03I141685	141685954	141687498	0.95	[{'connected_gene': 'RNF7', 'score': 11.87}, {'connected_gene': 'ATP1B3', 'score': 10.61}, {'connected_gene': 'GRK7', 'score': 10.38}, {'connected_gene': 'TPT1P3', 'score': 0.34}, {'connected_gene': 'LOC646730', 'score': 0.31}]
chr3	GH03I141680	141680601	141681659	0.79	[{'connected_gene': 'RNF7', 'score': 11.71}, {'connected_gene': 'GRK7', 'score': 10.89}, {'connected_gene': 'LOC646730', 'score': 0.34}, {'connected_gene': 'TPT1P3', 'score': 0.31}]
chr3	GH03I141646	141646800	141647200	0.98	[{'connected_gene': 'RNF7', 'score': 12.31}, {'connected_gene': 'GRK7', 'score': 11.25}, {'connected_gene': 'LOC646730', 'score': 0.39}, {'connected_gene': 'GC03P141615', 'score': 0.29}]
chr3	GH03I141644	141644999	141645201	0.92	[{'connected_gene': 'RNF7', 'score': 12.31}, {'connected_gene': 'GRK7', 'score': 11.25}, {'connected_gene': 'LOC646730', 'score': 0.37}, {'connected_gene': 'GC03P141615', 'score': 0.29}]
chr3	GH03I141677	141677818	141677972	0.23	[{'connected_gene': 'RNF7', 'score': 11.95}, {'connected_gene': 'GRK7', 'score': 10.19}, {'connected_gene': 'ATP1B3', 'score': 4.81}, {'connected_gene': 'LOC646730', 'score': 0.37}, {'connected_gene': 'TPT1P3', 'score': 0.29}]
chr3	GH03I141860	141860621	141861968	1.15	[{'connected_gene': 'RNF7', 'score': 11.65}, {'connected_gene': 'GRK7', 'score': 10.86}, {'connected_gene': 'ATP1B3', 'score': 7.5}, {'connected_gene': 'GC03M141866', 'score': 0.77}, {'connected_gene': 'LOC105374134', 'score': 0.44}]
chr3	GH03I141933	141933705	141934468	0.38	[{'connected_gene': 'RNF7', 'score': 11.23}, {'connected_gene': 'GRK7', 'score': 10.32}, {'connected_gene': 'ATP1B3', 'score': 7.34}, {'connected_gene': 'ENSG00000279147', 'score': 0.77}, {'connected_gene': 'ATP1B3-AS1', 'score': 0.37}]
chr3	GH03I141859	141859319	141860098	0.43	[{'connected_gene': 'RNF7', 'score': 11.65}, {'connected_gene': 'GRK7', 'score': 11.5}, {'connected_gene': 'RNU6-509P', 'score': 10.81}, {'connected_gene': 'GC03M141866', 'score': 0.44}, {'connected_gene': 'LOC105374134', 'score': 0.44}]
chr3	GH03I141863	141863327	141864706	0.45	[{'connected_gene': 'HMGN2P25', 'score': 550.77}, {'connected_gene': 'GC03M141866', 'score': 550.77}, {'connected_gene': 'RNF7', 'score': 11.43}, {'connected_gene': 'GRK7', 'score': 11.31}, {'connected_gene': 'ATP1B3', 'score': 9.83}, {'connected_gene': 'LOC105374134', 'score': 0.39}]
chr3	GH03I141803	141803992	141806356	1.01	[{'connected_gene': 'XRN1', 'score': 36.1}, {'connected_gene': 'ATR', 'score': 12.76}, {'connected_gene': 'TRPC1', 'score': 11.86}, {'connected_gene': 'RASA2', 'score': 10.88}, {'connected_gene': 'YWHAQP6', 'score': 10.59}, {'connected_gene': 'ENSG00000244327', 'score': 10.4}, {'connected_gene': 'GRK7', 'score': 6.47}, {'connected_gene': 'PIR31846', 'score': 0.34}, {'connected_gene': 'LOC105374134', 'score': 0.25}]
chr3	GH03I141795	141795247	141799227	1.14	[{'connected_gene': 'ATP1B3', 'score': 12.12}, {'connected_gene': 'RNF7', 'score': 11.7}, {'connected_gene': 'GRK7', 'score': 10.34}, {'connected_gene': 'RASA2', 'score': 2.9}, {'connected_gene': 'TFDP2', 'score': 1.95}, {'connected_gene': 'GK5', 'score': 1.16}, {'connected_gene': 'PIR31846', 'score': 0.37}, {'connected_gene': 'LOC105374134', 'score': 0.23}]
chr3	GH03I141848	141848986	141849913	0.95	[{'connected_gene': 'ATP1B3', 'score': 18.14}, {'connected_gene': 'RNF7', 'score': 16.67}, {'connected_gene': 'GRK7', 'score': 11.13}, {'connected_gene': 'GK5', 'score': 5.43}, {'connected_gene': 'LOC105374134', 'score': 0.77}, {'connected_gene': 'PIR31846', 'score': 0.2}]
chr3	GH03I141913	141913319	141913468	0.78	[{'connected_gene': 'ATP1B3', 'score': 20.63}, {'connected_gene': 'TRPC1', 'score': 12.53}, {'connected_gene': 'RNF7', 'score': 11.54}, {'connected_gene': 'GRK7', 'score': 10.89}, {'connected_gene': 'RNU6-425P', 'score': 9.95}, {'connected_gene': 'ATP1B3-AS1', 'score': 0.44}, {'connected_gene': 'GC03M141903', 'score': 0.39}, {'connected_gene': 'RNU6-509P', 'score': 0.39}]
chr3	GH03I141854	141854746	141854868	0.34	[{'connected_gene': 'ATP1B3', 'score': 15.5}, {'connected_gene': 'GRK7', 'score': 12.78}, {'connected_gene': 'RNF7', 'score': 11.17}, {'connected_gene': 'RNU6-509P', 'score': 11.01}, {'connected_gene': 'LOC105374134', 'score': 0.77}, {'connected_gene': 'GC03M141866', 'score': 0.39}]
chr3	GH03I142034	142034954	142038199	0.54	[{'connected_gene': 'ATP1B3', 'score': 4.86}, {'connected_gene': 'GRK7', 'score': 4.31}, {'connected_gene': 'RPL19P6', 'score': 0.44}, {'connected_gene': 'PIR46950', 'score': 0.18}, {'connected_gene': 'TFDP2', 'score': 0.14}]
chr3	GH03I141828	141828316	141831628	0.86	[{'connected_gene': 'GRK7', 'score': 16.73}, {'connected_gene': 'RNF7', 'score': 16.72}, {'connected_gene': 'ATP1B3', 'score': 12.03}, {'connected_gene': 'LOC105374134', 'score': 0.34}, {'connected_gene': 'PIR31846', 'score': 0.25}]
chr3	GH03I141678	141678962	141679228	0.26	[{'connected_gene': 'GRK7', 'score': 10.87}, {'connected_gene': 'LOC646730', 'score': 0.37}, {'connected_gene': 'TPT1P3', 'score': 0.29}]
chr3	GH03I141763	141763333	141763609	0.28	[{'connected_gene': 'GRK7', 'score': 12.82}, {'connected_gene': 'ATP1B3', 'score': 11.99}, {'connected_gene': 'RNU6-509P', 'score': 11.56}, {'connected_gene': 'GC03P141781', 'score': 0.39}, {'connected_gene': 'GC03P141782', 'score': 0.39}]
chr3	GH03I141762	141762801	141763000	0.31	[{'connected_gene': 'GRK7', 'score': 16.57}, {'connected_gene': 'ATP1B3', 'score': 11.99}, {'connected_gene': 'RNU6-509P', 'score': 11.55}, {'connected_gene': 'GC03P141781', 'score': 0.37}, {'connected_gene': 'GC03P141782', 'score': 0.37}]
chr3	GH03I141852	141852802	141854000	0.62	[{'connected_gene': 'LOC105374134', 'score': 550.77}, {'connected_gene': 'ATP1B3', 'score': 17.38}, {'connected_gene': 'RNF7', 'score': 11.83}, {'connected_gene': 'GRK7', 'score': 11.7}, {'connected_gene': 'RNU6-509P', 'score': 11.01}, {'connected_gene': 'GC03M141866', 'score': 0.39}]
chr3	GH03I141851	141851539	141851688	0.31	[{'connected_gene': 'LOC105374134', 'score': 550.77}, {'connected_gene': 'ATP1B3', 'score': 12.4}, {'connected_gene': 'RNF7', 'score': 12.12}, {'connected_gene': 'GRK7', 'score': 11.12}, {'connected_gene': 'GC03M141866', 'score': 0.39}]
chr3	GH03I141894	141894899	141895068	0.69	[{'connected_gene': 'ATP1B3-AS1', 'score': 11.26}, {'connected_gene': 'GRK7', 'score': 10.85}, {'connected_gene': 'RNF7', 'score': 10.35}, {'connected_gene': 'GC03M141903', 'score': 0.44}, {'connected_gene': 'RNU6-509P', 'score': 0.44}, {'connected_gene': 'GC03P141887', 'score': 0.44}, {'connected_gene': 'ATP1B3', 'score': 0.37}]
chr3	GH03I141707	141707139	141712077	0.92	[{'connected_gene': 'TPT1P3', 'score': 550.77}, {'connected_gene': 'RNF7', 'score': 16.87}, {'connected_gene': 'GRK7', 'score': 6.08}, {'connected_gene': 'LOC646730', 'score': 0.25}]
chr3	GH03I141937	141937241	141938772	0.38	[{'connected_gene': 'ENSG00000279147', 'score': 550.77}, {'connected_gene': 'RNF7', 'score': 11.35}, {'connected_gene': 'GRK7', 'score': 10.31}, {'connected_gene': 'ATP1B3-AS1', 'score': 0.37}]
chr3	GH03I141778	141778156	141778215	0.61	[{'connected_gene': 'GC03P141781', 'score': 550.77}, {'connected_gene': 'GC03P141782', 'score': 550.77}, {'connected_gene': 'GRK7', 'score': 550.31}, {'connected_gene': 'PIR31846', 'score': 0.77}]
chr3	GH03I141807	141807313	141807949	0.46	[{'connected_gene': 'PIR31846', 'score': 0.31}, {'connected_gene': 'LOC105374134', 'score': 0.26}, {'connected_gene': 'GRK7', 'score': 0.22}]