PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000374210	[[115983807, 115983958], [116018393, 116018557], [116019392, 116019465], [116020973, 116021142], [116022551, 116022588], [116028515, 116028674]]	[[116018428, 116018557], [116019392, 116019465], [116020973, 116021142], [116022551, 116022588], [116028515, 116028674]]
ENST00000374212	[[115983841, 115983958], [116018393, 116018557], [116019392, 116019465], [116020973, 116021142], [116022551, 116026772]]	[[116018428, 116018557], [116019392, 116019465], [116020973, 116021142], [116022551, 116022753]]
ENST00000496650	[[115983866, 115983958], [115989557, 115989940]]	None
NM_001859	[[115983807, 115983958], [116018393, 116018557], [116019392, 116019465], [116020973, 116021142], [116022551, 116026772]]	[[116018428, 116018557], [116019392, 116019465], [116020973, 116021142], [116022551, 116022753]]

Promoter

Chrom	Start	End	Description
chr9	115983809	115983880	CAGE_peak_1_at_SLC31A1_5end
chr9	116018445	116018462	CAGE_peak_2_at_SLC31A1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I113205	113205601	113206188	0.49	[{'connected_gene': 'PRPF4', 'score': 14.19}, {'connected_gene': 'POLE3', 'score': 6.93}, {'connected_gene': 'BSPRY', 'score': 6.21}, {'connected_gene': 'SLC31A1', 'score': 5.59}, {'connected_gene': 'FKBP15', 'score': 0.37}, {'connected_gene': 'PIR31842', 'score': 0.26}]
chr9	GH09I113235	113235801	113236000	0.38	[{'connected_gene': 'PRPF4', 'score': 10.64}, {'connected_gene': 'CDC26', 'score': 10.64}, {'connected_gene': 'SLC31A1', 'score': 0.39}, {'connected_gene': 'PIR39900', 'score': 0.31}]
chr9	GH09I113268	113268991	113270303	0.2	[{'connected_gene': 'PRPF4', 'score': 35.76}, {'connected_gene': 'CDC26', 'score': 28.01}, {'connected_gene': 'WDR31', 'score': 17.12}, {'connected_gene': 'SLC31A1', 'score': 11.21}, {'connected_gene': 'FKBP15', 'score': 11.21}, {'connected_gene': 'RNF183', 'score': 10.51}, {'connected_gene': 'POLE3', 'score': 9.98}, {'connected_gene': 'C9orf43', 'score': 9.98}, {'connected_gene': 'PIR39900', 'score': 0.44}]
chr9	GH09I113232	113232340	113233800	0.91	[{'connected_gene': 'PRPF4', 'score': 18.09}, {'connected_gene': 'SLC31A2', 'score': 8.13}, {'connected_gene': 'BSPRY', 'score': 6.06}, {'connected_gene': 'SLC46A2', 'score': 4.56}, {'connected_gene': 'SNX30', 'score': 2.24}, {'connected_gene': 'FKBP15', 'score': 1.95}, {'connected_gene': 'RGS3', 'score': 1.66}, {'connected_gene': 'SLC31A1', 'score': 0.39}, {'connected_gene': 'PIR39900', 'score': 0.31}]
chr9	GH09I113249	113249296	113249645	0.37	[{'connected_gene': 'PRPF4', 'score': 17.3}, {'connected_gene': 'WDR31', 'score': 12.79}, {'connected_gene': 'PIR39900', 'score': 0.39}, {'connected_gene': 'SLC31A1', 'score': 0.31}]
chr9	GH09I113369	113369414	113369719	0.95	[{'connected_gene': 'BSPRY', 'score': 5.86}, {'connected_gene': 'FKBP15', 'score': 4.9}, {'connected_gene': 'SLC31A1', 'score': 4.64}, {'connected_gene': 'HDHD3', 'score': 0.44}]
chr9	GH09I113609	113609327	113611501	1.29	[{'connected_gene': 'C9orf43', 'score': 15.9}, {'connected_gene': 'PRPF4', 'score': 11.87}, {'connected_gene': 'CDC26', 'score': 11.56}, {'connected_gene': 'RGS3', 'score': 10.62}, {'connected_gene': 'ALAD', 'score': 9.95}, {'connected_gene': 'SLC31A1', 'score': 9.67}, {'connected_gene': 'FKBP15', 'score': 9.67}, {'connected_gene': 'LOC105376222', 'score': 0.77}, {'connected_gene': 'LOC105376221', 'score': 0.34}]
chr9	GH09I113227	113227686	113228888	0.88	[{'connected_gene': 'CDC26', 'score': 30.02}, {'connected_gene': 'PRPF4', 'score': 10.37}, {'connected_gene': 'SLC31A2', 'score': 9.98}, {'connected_gene': 'RNF183', 'score': 9.89}, {'connected_gene': 'SLC31A1', 'score': 0.44}, {'connected_gene': 'PIR39900', 'score': 0.29}]
chr9	GH09I113218	113218551	113223600	2.36	[{'connected_gene': 'FKBP15', 'score': 553.29}, {'connected_gene': 'SLC31A1', 'score': 550.77}, {'connected_gene': 'CDC26', 'score': 20.95}, {'connected_gene': 'PRPF4', 'score': 19.79}, {'connected_gene': 'WDR31', 'score': 12.27}, {'connected_gene': 'SLC31A2', 'score': 5.83}, {'connected_gene': 'SNX30', 'score': 4.64}, {'connected_gene': 'SLC46A2', 'score': 3.01}, {'connected_gene': 'RGS3', 'score': 1.57}, {'connected_gene': 'PIR31842', 'score': 0.22}]
chr9	GH09I113224	113224121	113224270	0.56	[{'connected_gene': 'SLC31A2', 'score': 17.26}, {'connected_gene': 'PRPF4', 'score': 10.36}, {'connected_gene': 'CDC26', 'score': 10.36}, {'connected_gene': 'RNF183', 'score': 9.62}, {'connected_gene': 'SLC31A1', 'score': 0.77}, {'connected_gene': 'PIR39900', 'score': 0.28}]
chr9	GH09I113131	113131644	113132006	1.02	[{'connected_gene': 'SLC31A2', 'score': 12.66}, {'connected_gene': 'SLC31A1', 'score': 9.38}, {'connected_gene': 'FKBP15', 'score': 9.38}, {'connected_gene': 'CDC26', 'score': 9.24}, {'connected_gene': 'PRPF4', 'score': 9.24}, {'connected_gene': 'FAM225B', 'score': 8.78}, {'connected_gene': 'HDHD3', 'score': 5.67}, {'connected_gene': 'RGS3', 'score': 2.26}, {'connected_gene': 'SNX30', 'score': 2.18}, {'connected_gene': 'PIR44474', 'score': 0.39}]
chr9	GH09I113186	113186649	113189800	0.8	[{'connected_gene': 'SLC31A1', 'score': 17.63}, {'connected_gene': 'PRPF4', 'score': 14.56}, {'connected_gene': 'SLC31A2', 'score': 11.19}, {'connected_gene': 'FKBP15', 'score': 11.15}, {'connected_gene': 'RNF183', 'score': 10.46}, {'connected_gene': 'BSPRY', 'score': 8.77}, {'connected_gene': 'HDHD3', 'score': 6.06}, {'connected_gene': 'PIR31842', 'score': 0.34}]
chr9	GH09I113137	113137414	113138381	0.85	[{'connected_gene': 'SLC31A1', 'score': 10.58}, {'connected_gene': 'FKBP15', 'score': 10.58}, {'connected_gene': 'PRPF4', 'score': 9.82}, {'connected_gene': 'CDC26', 'score': 9.82}, {'connected_gene': 'HDHD3', 'score': 4.46}, {'connected_gene': 'SLC31A2', 'score': 0.39}, {'connected_gene': 'PIR44474', 'score': 0.37}]
chr9	GH09I113183	113183989	113185555	0.38	[{'connected_gene': 'SLC31A1', 'score': 17.64}, {'connected_gene': 'SLC31A2', 'score': 11.21}, {'connected_gene': 'FKBP15', 'score': 11.13}, {'connected_gene': 'PIR31842', 'score': 0.37}]
chr9	GH09I113234	113234001	113234200	0.31	[{'connected_gene': 'SLC31A1', 'score': 0.39}, {'connected_gene': 'PIR39900', 'score': 0.31}]
chr9	GH09I114003	114003160	114005185	0.51	[{'connected_gene': 'ZNF618', 'score': 4.89}, {'connected_gene': 'SLC31A1', 'score': 4.66}, {'connected_gene': 'GC09P114664', 'score': 0.23}]
chr9	GH09I113342	113342121	113342270	0.6	[{'connected_gene': 'WDR31', 'score': 550.77}, {'connected_gene': 'BSPRY', 'score': 12.92}, {'connected_gene': 'SLC31A1', 'score': 5.89}]
chr9	GH09I113160	113160721	113160830	0.63	[{'connected_gene': 'GC09M113167', 'score': 550.77}, {'connected_gene': 'RNF183', 'score': 9.66}, {'connected_gene': 'SLC31A1', 'score': 7.01}, {'connected_gene': 'SLC31A2', 'score': 0.44}, {'connected_gene': 'PIR43385', 'score': 0.44}]
chr9	GH09I113164	113164120	113164707	0.31	[{'connected_gene': 'PIR31842', 'score': 550.77}, {'connected_gene': 'GC09M113164', 'score': 550.77}, {'connected_gene': 'PIR58423', 'score': 550.77}, {'connected_gene': 'SLC31A1', 'score': 7.11}, {'connected_gene': 'SLC31A2', 'score': 0.39}, {'connected_gene': 'FKBP15', 'score': 0.22}]