PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000358781	[[58619672, 58620095], [58622020, 58622147], [58622867, 58622952], [58625853, 58625904], [58629388, 58629447], [58631235, 58631353], [58635041, 58635065], [58639400, 58639508], [58641277, 58641328], [58652302, 58652575]]	[[58620005, 58620095], [58622020, 58622147], [58622867, 58622952], [58625853, 58625904], [58629388, 58629447], [58631235, 58631353], [58635041, 58635065], [58639400, 58639508], [58641277, 58641290]]
ENST00000483787	[[58622868, 58622952], [58625853, 58625904], [58629388, 58629447], [58631235, 58631353], [58635041, 58635062], [58639400, 58639508], [58641277, 58641328], [58643248, 58643493]]	[[58622868, 58622952], [58625853, 58625904], [58629388, 58629447], [58631235, 58631353], [58635041, 58635062], [58639400, 58639508], [58641277, 58641290]]
ENST00000489857	[[58622878, 58622952], [58625853, 58625904], [58629388, 58629447], [58631235, 58631353], [58635041, 58635062], [58641277, 58641328], [58652302, 58652561]]	[[58622878, 58622952], [58625853, 58625904], [58629388, 58629447], [58631235, 58631353], [58635041, 58635062], [58641277, 58641290]]
ENST00000482623	[[58622881, 58622952], [58625853, 58625904], [58629388, 58629447], [58631235, 58631353], [58635041, 58635141], [58641277, 58641328], [58643248, 58643423]]	[[58631346, 58631353], [58635041, 58635141], [58641277, 58641290]]
ENST00000498347	[[58629402, 58629447], [58631235, 58631353], [58635041, 58635065], [58639400, 58639508], [58641277, 58641328], [58643248, 58643298], [58643422, 58643475]]	[[58629402, 58629447], [58631235, 58631353], [58635041, 58635065], [58639400, 58639508], [58641277, 58641290]]
NM_138805	[[58619669, 58620095], [58622020, 58622147], [58622867, 58622952], [58625853, 58625904], [58629388, 58629447], [58631235, 58631353], [58635041, 58635065], [58639400, 58639508], [58641277, 58641328], [58652302, 58652561]]	[[58620005, 58620095], [58622020, 58622147], [58622867, 58622952], [58625853, 58625904], [58629388, 58629447], [58631235, 58631353], [58635041, 58635065], [58639400, 58639508], [58641277, 58641290]]

Promoter

Chrom	Start	End	Description
chr3	58643295	58643304	CAGE_peak_8_at_FAM3D_5end
chr3	58643458	58643478	CAGE_peak_4_at_FAM3D_5end
chr3	58643483	58643499	CAGE_peak_1_at_FAM3D_5end
chr3	58643515	58643526	CAGE_peak_5_at_FAM3D_5end
chr3	58643556	58643567	CAGE_peak_7_at_FAM3D_5end
chr3	58652465	58652479	CAGE_peak_6_at_FAM3D_5end
chr3	58652490	58652519	CAGE_peak_2_at_FAM3D_5end
chr3	58652523	58652570	CAGE_peak_3_at_FAM3D_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I058556	58556895	58558707	0.65	[{'connected_gene': 'ACOX2', 'score': 17.64}, {'connected_gene': 'FAM107A', 'score': 12.05}, {'connected_gene': 'FAM3D-AS1', 'score': 11.5}, {'connected_gene': 'HTD2', 'score': 10.25}, {'connected_gene': 'RPP14', 'score': 10.25}, {'connected_gene': 'FAM3D', 'score': 10.04}, {'connected_gene': 'ENSG00000243384', 'score': 0.39}]
chr3	GH03I058560	58560601	58562723	0.85	[{'connected_gene': 'ACOX2', 'score': 17.69}, {'connected_gene': 'FAM3D-AS1', 'score': 11.51}, {'connected_gene': 'FAM107A', 'score': 11.29}, {'connected_gene': 'HTD2', 'score': 10.25}, {'connected_gene': 'RPP14', 'score': 10.25}, {'connected_gene': 'FAM3D', 'score': 9.63}, {'connected_gene': 'ENSG00000243384', 'score': 0.39}]
chr3	GH03I058563	58563794	58563943	0.31	[{'connected_gene': 'ACOX2', 'score': 18.26}, {'connected_gene': 'FAM3D-AS1', 'score': 11.51}, {'connected_gene': 'FAM107A', 'score': 11.3}, {'connected_gene': 'HTD2', 'score': 10.25}, {'connected_gene': 'RPP14', 'score': 10.25}, {'connected_gene': 'FAM3D', 'score': 9.63}, {'connected_gene': 'ENSG00000243384', 'score': 0.44}]
chr3	GH03I058679	58679541	58681174	0.51	[{'connected_gene': 'PXK', 'score': 4.8}, {'connected_gene': 'FAM3D', 'score': 0.39}, {'connected_gene': 'LOC105377109', 'score': 0.37}, {'connected_gene': 'GC03P058659', 'score': 0.34}, {'connected_gene': 'C3orf67-AS1', 'score': 0.11}]
chr3	GH03I058682	58682248	58684492	0.6	[{'connected_gene': 'PXK', 'score': 5.02}, {'connected_gene': 'FAM3D', 'score': 0.37}, {'connected_gene': 'LOC105377109', 'score': 0.34}, {'connected_gene': 'GC03P058659', 'score': 0.34}, {'connected_gene': 'C3orf67-AS1', 'score': 0.11}]
chr3	GH03I058688	58688401	58689363	0.4	[{'connected_gene': 'FAM3D', 'score': 11.88}, {'connected_gene': 'PXK', 'score': 6.14}, {'connected_gene': 'LOC105377109', 'score': 0.31}, {'connected_gene': 'GC03P058659', 'score': 0.31}, {'connected_gene': 'C3orf67-AS1', 'score': 0.12}]
chr3	GH03I058666	58666241	58669342	1.28	[{'connected_gene': 'FAM3D', 'score': 557.43}, {'connected_gene': 'LOC105377109', 'score': 0.77}, {'connected_gene': 'GC03P058659', 'score': 0.44}, {'connected_gene': 'C3orf67-AS1', 'score': 0.1}]
chr3	GH03I058664	58664331	58665879	0.31	[{'connected_gene': 'FAM3D', 'score': 557.49}, {'connected_gene': 'LOC105377109', 'score': 550.77}, {'connected_gene': 'GC03P058659', 'score': 0.44}]
chr3	GH03I058641	58641821	58643645	0.2	[{'connected_gene': 'FAM3D', 'score': 12.49}, {'connected_gene': 'FAM3D-AS1', 'score': 11.28}, {'connected_gene': 'ENSG00000243384', 'score': 10.72}, {'connected_gene': 'C3orf67-AS1', 'score': 10.11}, {'connected_gene': 'FAM107A', 'score': 7.63}, {'connected_gene': 'GC03M058625', 'score': 0.44}]
chr3	GH03I058693	58693853	58694486	0.74	[{'connected_gene': 'FAM3D', 'score': 11.75}, {'connected_gene': 'C3orf67-AS1', 'score': 10.48}, {'connected_gene': 'FAM107A', 'score': 10.35}, {'connected_gene': 'PXK', 'score': 5.55}, {'connected_gene': 'LOC105377109', 'score': 0.29}, {'connected_gene': 'GC03P058659', 'score': 0.29}]
chr3	GH03I058695	58695934	58696617	0.4	[{'connected_gene': 'FAM3D', 'score': 11.75}, {'connected_gene': 'C3orf67-AS1', 'score': 10.49}, {'connected_gene': 'FAM107A', 'score': 10.35}, {'connected_gene': 'LOC105377109', 'score': 0.29}, {'connected_gene': 'GC03P058659', 'score': 0.28}]
chr3	GH03I058656	58656436	58657019	0.2	[{'connected_gene': 'FAM3D', 'score': 6.93}, {'connected_gene': 'GC03M058625', 'score': 0.77}, {'connected_gene': 'GC03P058659', 'score': 0.77}]
chr3	GH03I058653	58653656	58654953	0.31	[{'connected_gene': 'FAM107A', 'score': 7.38}, {'connected_gene': 'GC03M058625', 'score': 0.77}, {'connected_gene': 'GC03P058659', 'score': 0.44}, {'connected_gene': 'FAM3D', 'score': 0.39}]
chr3	GH03I058647	58647351	58648632	0.69	[{'connected_gene': 'FAM107A', 'score': 18.62}, {'connected_gene': 'FAM3D-AS1', 'score': 11.29}, {'connected_gene': 'KCTD6', 'score': 10.48}, {'connected_gene': 'GC03M058625', 'score': 0.77}, {'connected_gene': 'FAM3D', 'score': 0.37}]
chr3	GH03I058649	58649434	58650292	0.43	[{'connected_gene': 'FAM107A', 'score': 18.28}, {'connected_gene': 'FAM3D-AS1', 'score': 11.29}, {'connected_gene': 'GC03M058625', 'score': 0.77}, {'connected_gene': 'FAM3D', 'score': 0.37}]
chr3	GH03I058660	58660582	58663021	0.31	[{'connected_gene': 'LOC105377109', 'score': 550.77}, {'connected_gene': 'FAM3D', 'score': 6.74}, {'connected_gene': 'PXK', 'score': 5.92}, {'connected_gene': 'GC03P058659', 'score': 0.77}]
chr3	GH03I058663	58663616	58664146	0.2	[{'connected_gene': 'LOC105377109', 'score': 550.77}, {'connected_gene': 'FAM3D', 'score': 0.77}, {'connected_gene': 'GC03P058659', 'score': 0.77}]
chr3	GH03I058669	58669594	58673396	0.38	[{'connected_gene': 'FAM3D-AS1', 'score': 10.35}, {'connected_gene': 'FAM3D', 'score': 6.98}, {'connected_gene': 'PXK', 'score': 5.3}, {'connected_gene': 'FAM107A', 'score': 4.86}, {'connected_gene': 'LOC105377109', 'score': 0.44}, {'connected_gene': 'GC03P058659', 'score': 0.39}, {'connected_gene': 'C3orf67-AS1', 'score': 0.1}]
chr3	GH03I058640	58640580	58641179	0.69	[{'connected_gene': 'FAM3D-AS1', 'score': 10.85}, {'connected_gene': 'FAM3D', 'score': 10.76}, {'connected_gene': 'ENSG00000243384', 'score': 10.72}, {'connected_gene': 'C3orf67-AS1', 'score': 9.72}, {'connected_gene': 'GC03M058625', 'score': 0.39}, {'connected_gene': 'FAM107A', 'score': 0.39}]
chr3	GH03I058657	58657455	58658273	0.9	[{'connected_gene': 'GC03P058659', 'score': 550.77}, {'connected_gene': 'FAM3D', 'score': 550.44}, {'connected_gene': 'GC03M058625', 'score': 0.44}]
chr3	GH03I058658	58658734	58659801	0.54	[{'connected_gene': 'GC03P058659', 'score': 550.77}, {'connected_gene': 'FAM3D', 'score': 0.44}, {'connected_gene': 'GC03M058625', 'score': 0.44}]
chr3	GH03I058659	58659834	58660515	0.31	[{'connected_gene': 'GC03P058659', 'score': 550.77}, {'connected_gene': 'LOC105377109', 'score': 0.77}, {'connected_gene': 'FAM3D', 'score': 0.44}]