PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000369500	[[116654375, 116654431], [116655027, 116655284], [116663552, 116663693], [116666686, 116666978], [116670086, 116670265], [116670765, 116670960], [116675752, 116677861]]	[[116655236, 116655284], [116663552, 116663693], [116666686, 116666978], [116670086, 116670265], [116670765, 116670960], [116675752, 116675986]]
ENST00000464946	[[116666493, 116666520], [116666686, 116666978], [116670086, 116670265], [116670765, 116670868]]	None
NM_152367	[[116654375, 116654431], [116655027, 116655284], [116663552, 116663693], [116666686, 116666978], [116670086, 116670265], [116670765, 116670960], [116675752, 116677861]]	[[116655236, 116655284], [116663552, 116663693], [116666686, 116666978], [116670086, 116670265], [116670765, 116670960], [116675752, 116675986]]

Promoter

Chrom	Start	End	Description
chr1	116654016	116654027	CAGE_peak_1_at_MAB21L3_5end
chr1	116654056	116654068	CAGE_peak_4_at_MAB21L3_5end
chr1	116654077	116654090	CAGE_peak_3_at_MAB21L3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I116092	116092677	116093619	0.52	[{'connected_gene': 'ATP1A1-AS1', 'score': 10.28}, {'connected_gene': 'MAB21L3', 'score': 5.29}, {'connected_gene': 'CD58', 'score': 4.99}, {'connected_gene': 'SLC22A15', 'score': 4.67}, {'connected_gene': 'GC01M116040', 'score': 0.44}]
chr1	GH01I116008	116008126	116009643	0.31	[{'connected_gene': 'CASQ2', 'score': 9.28}, {'connected_gene': 'SLC22A15', 'score': 8.19}, {'connected_gene': 'MAB21L3', 'score': 4.41}, {'connected_gene': 'ENSG00000237993', 'score': 0.44}, {'connected_gene': 'LOC101928977', 'score': 0.29}]
chr1	GH01I116023	116023583	116026057	0.2	[{'connected_gene': 'CASQ2', 'score': 9.33}, {'connected_gene': 'SLC22A15', 'score': 8.2}, {'connected_gene': 'MAB21L3', 'score': 5.16}, {'connected_gene': 'ENSG00000237993', 'score': 0.44}]
chr1	GH01I116026	116026369	116027632	0.2	[{'connected_gene': 'CASQ2', 'score': 9.33}, {'connected_gene': 'SLC22A15', 'score': 5.36}, {'connected_gene': 'ENSG00000237993', 'score': 0.44}, {'connected_gene': 'MAB21L3', 'score': 0.25}]
chr1	GH01I116029	116029611	116038735	0.46	[{'connected_gene': 'CASQ2', 'score': 9.45}, {'connected_gene': 'SLC22A15', 'score': 6.34}, {'connected_gene': 'MAB21L3', 'score': 5.19}, {'connected_gene': 'ENSG00000237993', 'score': 0.37}]
chr1	GH01I115552	115552209	115555011	0.2	[{'connected_gene': 'VANGL1', 'score': 21.23}, {'connected_gene': 'CASQ2', 'score': 4.24}, {'connected_gene': 'MAB21L3', 'score': 4.05}, {'connected_gene': 'ELOCP20', 'score': 0.77}, {'connected_gene': 'PIR61717', 'score': 0.31}]
chr1	GH01I115980	115980643	115984096	0.72	[{'connected_gene': 'SLC22A15', 'score': 20.74}, {'connected_gene': 'ENSG00000237993', 'score': 10.5}, {'connected_gene': 'CASQ2', 'score': 9.87}, {'connected_gene': 'MAB21L3', 'score': 5.09}, {'connected_gene': 'LOC101928977', 'score': 0.44}]
chr1	GH01I115986	115986266	115989706	0.52	[{'connected_gene': 'SLC22A15', 'score': 20.73}, {'connected_gene': 'ENSG00000237993', 'score': 11.96}, {'connected_gene': 'CASQ2', 'score': 10.03}, {'connected_gene': 'ENSG00000207502', 'score': 9.93}, {'connected_gene': 'MAB21L3', 'score': 5.09}, {'connected_gene': 'LOC101928977', 'score': 0.39}]
chr1	GH01I115991	115991085	115995993	0.31	[{'connected_gene': 'SLC22A15', 'score': 20.74}, {'connected_gene': 'ENSG00000237993', 'score': 12.2}, {'connected_gene': 'NHLH2', 'score': 11.05}, {'connected_gene': 'CASQ2', 'score': 10.03}, {'connected_gene': 'MAB21L3', 'score': 5.1}, {'connected_gene': 'LOC101928977', 'score': 0.37}]
chr1	GH01I116115	116115078	116116596	0.43	[{'connected_gene': 'SLC22A15', 'score': 12.3}, {'connected_gene': 'IGSF3', 'score': 4.68}, {'connected_gene': 'LOC105378918', 'score': 0.44}, {'connected_gene': 'GC01P116110', 'score': 0.44}, {'connected_gene': 'MAB21L3', 'score': 0.26}]
chr1	GH01I116006	116002900	116003049	0.4	[{'connected_gene': 'SLC22A15', 'score': 11.28}, {'connected_gene': 'MAB21L3', 'score': 5.12}, {'connected_gene': 'ENSG00000237993', 'score': 0.39}, {'connected_gene': 'LOC101928977', 'score': 0.31}]
chr1	GH01I116066	116066136	116068889	0.64	[{'connected_gene': 'SLC22A15', 'score': 6.57}, {'connected_gene': 'MAB21L3', 'score': 0.44}, {'connected_gene': 'GC01M116040', 'score': 0.29}, {'connected_gene': 'ENSG00000237993', 'score': 0.25}]
chr1	GH01I116021	116021246	116023354	0.31	[{'connected_gene': 'SLC22A15', 'score': 20.55}, {'connected_gene': 'ENSG00000237993', 'score': 0.77}, {'connected_gene': 'MAB21L3', 'score': 0.23}]
chr1	GH01I116131	116131996	116132906	0.79	[{'connected_gene': 'SLC22A15', 'score': 5.13}, {'connected_gene': 'LOC105378918', 'score': 0.44}, {'connected_gene': 'LINC01779', 'score': 0.29}, {'connected_gene': 'MAB21L3', 'score': 0.22}]
chr1	GH01I115975	115975601	115979359	2.49	[{'connected_gene': 'SLC22A15', 'score': 576.99}, {'connected_gene': 'LOC101928977', 'score': 550.77}, {'connected_gene': 'ATP1A1-AS1', 'score': 18.84}, {'connected_gene': 'ENSG00000237993', 'score': 10.86}, {'connected_gene': 'CASQ2', 'score': 10.42}, {'connected_gene': 'MAB21L3', 'score': 5.08}, {'connected_gene': 'IGSF3', 'score': 4.63}, {'connected_gene': 'ATP1A1', 'score': 2.6}]
chr1	GH01I116138	116138782	116139789	1.22	[{'connected_gene': 'ATP1A1', 'score': 10.82}, {'connected_gene': 'SLC22A15', 'score': 5.61}, {'connected_gene': 'MAB21L3', 'score': 5.09}, {'connected_gene': 'LOC105378918', 'score': 0.37}, {'connected_gene': 'LINC01779', 'score': 0.34}]
chr1	GH01I116147	116147814	116148623	0.2	[{'connected_gene': 'MAB21L3', 'score': 5.56}, {'connected_gene': 'CD58', 'score': 4.96}, {'connected_gene': 'SLC22A15', 'score': 4.51}, {'connected_gene': 'LINC01779', 'score': 0.37}, {'connected_gene': 'LOC105378918', 'score': 0.34}]
chr1	GH01I116150	116150820	116153849	1.22	[{'connected_gene': 'MAB21L3', 'score': 6.98}, {'connected_gene': 'SLC22A15', 'score': 5.19}, {'connected_gene': 'ATP1A1', 'score': 4.63}, {'connected_gene': 'LINC01779', 'score': 0.39}, {'connected_gene': 'LOC105378918', 'score': 0.31}]
chr1	GH01I116076	116076100	116076249	0.46	[{'connected_gene': 'MAB21L3', 'score': 550.77}, {'connected_gene': 'GC01M116040', 'score': 0.34}]
chr1	GH01I116122	116122598	116123483	0.9	[{'connected_gene': 'LOC105378918', 'score': 550.77}, {'connected_gene': 'ENSG00000237993', 'score': 9.61}, {'connected_gene': 'TTF2', 'score': 5.48}, {'connected_gene': 'GC01P116110', 'score': 0.39}, {'connected_gene': 'MAB21L3', 'score': 0.25}]
chr1	GH01I116123	116123920	116124052	0.31	[{'connected_gene': 'LOC105378918', 'score': 550.77}, {'connected_gene': 'ENSG00000237993', 'score': 9.61}, {'connected_gene': 'SLC22A15', 'score': 4.33}, {'connected_gene': 'GC01P116110', 'score': 0.39}, {'connected_gene': 'MAB21L3', 'score': 0.25}]
chr1	GH01I116109	116109553	116112995	1.6	[{'connected_gene': 'GC01P116110', 'score': 550.77}, {'connected_gene': 'MAB21L3', 'score': 550.28}, {'connected_gene': 'CD58', 'score': 5.15}, {'connected_gene': 'IGSF3', 'score': 4.77}, {'connected_gene': 'LOC105378918', 'score': 0.39}]
chr1	GH01I116018	116018676	116020450	0.38	[{'connected_gene': 'ENSG00000237993', 'score': 550.77}, {'connected_gene': 'MAB21L3', 'score': 5.14}, {'connected_gene': 'SLC22A15', 'score': 4.6}]