Visualization of regulatory element with DNMs in transcripts



Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.

Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000343801 [[46411632, 46411689], [46412190, 46412479], [46414382, 46417673]] [[46414393, 46415452]]
ENST00000292303 [[46412344, 46412479], [46414382, 46417697]] [[46414393, 46415452]]
ENST00000445772 [[46414160, 46415452]] [[46414393, 46415452]]
NM_001100168 [[46411632, 46411689], [46412425, 46412479], [46414382, 46417697]] [[46414393, 46415452]]
NM_000579 [[46411632, 46411689], [46412190, 46412479], [46414382, 46417697]] [[46414393, 46415452]]
Promoter
Chrom Start End Description
chr3 46412395 46412424 CAGE_peak_2_at_CCR5_5end
chr3 46412429 46412444 CAGE_peak_1_at_CCR5_5end

Enhancer
Chrom Start End Genehancer ID Score Attributes
chr3 GH03I046388 46388923 46389096 0.45 [{'connected_gene': 'CCRL2', 'score': 22.36}, {'connected_gene': 'CCR2', 'score': 10.97}, {'connected_gene': 'CCR1', 'score': 10.76}, {'connected_gene': 'CCR5', 'score': 7.5}, {'connected_gene': 'LOC102724297', 'score': 0.37}, {'connected_gene': 'GC03P046375', 'score': 0.37}]
chr3 GH03I046013 46013798 46014024 0.78 [{'connected_gene': 'CCRL2', 'score': 17.2}, {'connected_gene': 'LZTFL1', 'score': 10.36}, {'connected_gene': 'CCR5', 'score': 8.05}, {'connected_gene': 'CCR1', 'score': 5.52}, {'connected_gene': 'GC03M046017', 'score': 0.44}, {'connected_gene': 'LOC105377063', 'score': 0.37}]
chr3 GH03I046392 46392145 46397400 1.65 [{'connected_gene': 'CCRL2', 'score': 69.72}, {'connected_gene': 'CCR5', 'score': 25.66}, {'connected_gene': 'CCR1', 'score': 25.07}, {'connected_gene': 'CCR2', 'score': 14.85}, {'connected_gene': 'LOC102724297', 'score': 6.03}, {'connected_gene': 'LRRC2', 'score': 5.3}, {'connected_gene': 'TDGF1', 'score': 4.53}, {'connected_gene': 'GC03P046375', 'score': 0.34}]
chr3 GH03I046399 46399401 46400401 1.46 [{'connected_gene': 'CCRL2', 'score': 62.42}, {'connected_gene': 'CCR5', 'score': 22.72}, {'connected_gene': 'CCR1', 'score': 18.71}, {'connected_gene': 'CCR2', 'score': 10.59}, {'connected_gene': 'LOC102724297', 'score': 5.38}, {'connected_gene': 'GC03P046375', 'score': 0.31}]
chr3 GH03I046324 46324127 46324598 0.5 [{'connected_gene': 'CCRL2', 'score': 22.26}, {'connected_gene': 'CCR1', 'score': 13.83}, {'connected_gene': 'CCR2', 'score': 12.12}, {'connected_gene': 'CCR5', 'score': 11.66}, {'connected_gene': 'UQCRC2P1', 'score': 0.39}]
chr3 GH03I046416 46416775 46416955 0.82 [{'connected_gene': 'CCRL2', 'score': 10.45}, {'connected_gene': 'CCR1', 'score': 5.46}, {'connected_gene': 'CCR5', 'score': 5.38}, {'connected_gene': 'LINC02009', 'score': 0.44}]
chr3 GH03I046006 46006712 46007017 0.83 [{'connected_gene': 'CCRL2', 'score': 26.44}, {'connected_gene': 'CXCR6', 'score': 11.11}, {'connected_gene': 'LZTFL1', 'score': 10.66}, {'connected_gene': 'CCR2', 'score': 9.92}, {'connected_gene': 'CCR5', 'score': 7.66}, {'connected_gene': 'CCR1', 'score': 5.8}, {'connected_gene': 'LOC105377063', 'score': 0.39}, {'connected_gene': 'GC03M046017', 'score': 0.39}]
chr3 GH03I046404 46404188 46409007 2.58 [{'connected_gene': 'CCRL2', 'score': 591.48}, {'connected_gene': 'LOC102724297', 'score': 555.72}, {'connected_gene': 'CCR1', 'score': 15.56}, {'connected_gene': 'CCR2', 'score': 10.43}, {'connected_gene': 'RTP3', 'score': 10.27}, {'connected_gene': 'CCR5', 'score': 8.28}, {'connected_gene': 'LIMD1', 'score': 5.5}, {'connected_gene': 'LRRC2', 'score': 5.45}, {'connected_gene': 'TDGF1', 'score': 5.36}, {'connected_gene': 'PRSS45', 'score': 1.95}, {'connected_gene': 'GC03P046375', 'score': 0.29}]
chr3 GH03I046385 46385916 46387210 1.44 [{'connected_gene': 'CCRL2', 'score': 55.6}, {'connected_gene': 'LOC102724297', 'score': 18.02}, {'connected_gene': 'CCR1', 'score': 16.53}, {'connected_gene': 'CCR5', 'score': 12.09}, {'connected_gene': 'CCR2', 'score': 11.22}, {'connected_gene': 'LRRC2', 'score': 5.46}, {'connected_gene': 'LIMD1', 'score': 5.35}, {'connected_gene': 'GC03P046375', 'score': 0.39}]
chr3 GH03I045991 45991295 45996613 2.56 [{'connected_gene': 'FYCO1', 'score': 565.58}, {'connected_gene': 'LOC105377063', 'score': 550.77}, {'connected_gene': 'CXCR6', 'score': 17.42}, {'connected_gene': 'CCR1', 'score': 4.69}, {'connected_gene': 'CCDC12', 'score': 4.44}, {'connected_gene': 'SACM1L', 'score': 2.9}, {'connected_gene': 'CCR5', 'score': 2.52}, {'connected_gene': 'CCR2', 'score': 1.13}]
chr3 GH03I046302 46302994 46306613 0.52 [{'connected_gene': 'CCR2', 'score': 20.52}, {'connected_gene': 'CCR5', 'score': 11.29}, {'connected_gene': 'CCR1', 'score': 7.87}, {'connected_gene': 'LRRC2', 'score': 5.62}, {'connected_gene': 'GC03M046310', 'score': 0.44}]
chr3 GH03I046358 46358889 46362599 1.06 [{'connected_gene': 'CCR2', 'score': 9.39}, {'connected_gene': 'CCR1', 'score': 8.17}, {'connected_gene': 'CCRL2', 'score': 5.84}, {'connected_gene': 'LRRC2', 'score': 5.64}, {'connected_gene': 'CCR5', 'score': 0.44}]
chr3 GH03I046354 46354801 46357200 0.94 [{'connected_gene': 'CCR2', 'score': 11.68}, {'connected_gene': 'CCR1', 'score': 8.45}, {'connected_gene': 'CCRL2', 'score': 6.14}, {'connected_gene': 'CCR3', 'score': 4.57}, {'connected_gene': 'CCR5', 'score': 0.39}]
chr3 GH03I046353 46353350 46354657 1.21 [{'connected_gene': 'CCR2', 'score': 558.17}, {'connected_gene': 'CCR1', 'score': 8.09}, {'connected_gene': 'CCR5', 'score': 0.37}]
chr3 GH03I046375 46375201 46376186 0.6 [{'connected_gene': 'CCR2', 'score': 11.24}, {'connected_gene': 'CCR1', 'score': 11.07}, {'connected_gene': 'LOC102724297', 'score': 5.17}, {'connected_gene': 'LTF', 'score': 4.57}, {'connected_gene': 'GC03P046375', 'score': 0.77}, {'connected_gene': 'CCR5', 'score': 0.44}]
chr3 GH03I046504 46504917 46505138 0.37 [{'connected_gene': 'TDGF1', 'score': 10.42}, {'connected_gene': 'PTH1R', 'score': 9.7}, {'connected_gene': 'MYL3', 'score': 9.69}, {'connected_gene': 'CCRL2', 'score': 7.76}, {'connected_gene': 'CCR1', 'score': 2.2}, {'connected_gene': 'CCR5', 'score': 1.46}, {'connected_gene': 'RTP3', 'score': 0.44}, {'connected_gene': 'LOC105377070', 'score': 0.44}]
chr3 GH03I046367 46367916 46372831 1.95 [{'connected_gene': 'CCR5', 'score': 562.14}, {'connected_gene': 'CCRL2', 'score': 56.15}, {'connected_gene': 'CCR1', 'score': 45.66}, {'connected_gene': 'LOC102724297', 'score': 15.73}, {'connected_gene': 'LRRC2', 'score': 5.64}, {'connected_gene': 'TDGF1', 'score': 4.8}, {'connected_gene': 'CCR2', 'score': 4.17}, {'connected_gene': 'GC03P046374', 'score': 0.77}]
chr3 GH03I046276 46276630 46276779 0.56 [{'connected_gene': 'CCR5', 'score': 12.25}, {'connected_gene': 'CCR2', 'score': 11.72}, {'connected_gene': 'CCR1', 'score': 11.39}, {'connected_gene': 'GC03M046310', 'score': 0.28}]
chr3 GH03I046191 46191801 46192400 0.92 [{'connected_gene': 'CCR1', 'score': 17.04}, {'connected_gene': 'CCRL2', 'score': 13.31}, {'connected_gene': 'CCR2', 'score': 10.99}, {'connected_gene': 'CCR5', 'score': 3.39}, {'connected_gene': 'CCR3', 'score': 0.31}]
chr3 GH03I046183 46183922 46185304 1.14 [{'connected_gene': 'CCR1', 'score': 30.88}, {'connected_gene': 'CCRL2', 'score': 18.91}, {'connected_gene': 'SETD2', 'score': 13.12}, {'connected_gene': 'RN7SL145P', 'score': 11.84}, {'connected_gene': 'CCDC12', 'score': 10.47}, {'connected_gene': 'CCR5', 'score': 6.01}, {'connected_gene': 'CCR3', 'score': 0.34}, {'connected_gene': 'LOC105377067', 'score': 0.23}]
chr3 GH03I046209 46209817 46209966 0.6 [{'connected_gene': 'CCR1', 'score': 580.22}, {'connected_gene': 'CCRL2', 'score': 25.38}, {'connected_gene': 'CCR5', 'score': 11.37}, {'connected_gene': 'CCR2', 'score': 10.88}, {'connected_gene': 'CCR3', 'score': 0.25}, {'connected_gene': 'GC03M046310', 'score': 0.15}]
chr3 GH03I046212 46212694 46213958 1.22 [{'connected_gene': 'CCR1', 'score': 37.61}, {'connected_gene': 'CCRL2', 'score': 32.22}, {'connected_gene': 'CCR5', 'score': 11.03}, {'connected_gene': 'CCR2', 'score': 10.81}, {'connected_gene': 'LOC102724297', 'score': 9.87}, {'connected_gene': 'RTP3', 'score': 9.53}, {'connected_gene': 'CCR3', 'score': 0.25}, {'connected_gene': 'GC03M046310', 'score': 0.15}]
chr3 GH03I046184 46183381 46183706 0.69 [{'connected_gene': 'CCR1', 'score': 36.32}, {'connected_gene': 'CCRL2', 'score': 13.05}, {'connected_gene': 'CCR5', 'score': 5.29}, {'connected_gene': 'CCR3', 'score': 0.37}, {'connected_gene': 'LOC105377067', 'score': 0.23}]
chr3 GH03I046186 46186514 46187667 1.33 [{'connected_gene': 'CCR1', 'score': 32.46}, {'connected_gene': 'CCRL2', 'score': 10.66}, {'connected_gene': 'CCR5', 'score': 5.7}, {'connected_gene': 'CCR3', 'score': 4.69}, {'connected_gene': 'LOC105377067', 'score': 0.22}]
chr3 GH03I046187 46187949 46188202 0.97 [{'connected_gene': 'CCR1', 'score': 23.53}, {'connected_gene': 'CCRL2', 'score': 17.43}, {'connected_gene': 'CCR5', 'score': 5.65}, {'connected_gene': 'CCR3', 'score': 0.34}, {'connected_gene': 'LOC105377067', 'score': 0.22}]
chr3 GH03I046206 46206450 46209315 2.26 [{'connected_gene': 'CCR1', 'score': 589.2}, {'connected_gene': 'CCRL2', 'score': 21.38}, {'connected_gene': 'CCR5', 'score': 7.14}, {'connected_gene': 'CCR3', 'score': 0.26}]
chr3 GH03I046135 46135540 46135815 0.49 [{'connected_gene': 'CCR1', 'score': 27.67}, {'connected_gene': 'CCRL2', 'score': 4.35}, {'connected_gene': 'CCR5', 'score': 2.78}, {'connected_gene': 'LOC105377067', 'score': 0.77}, {'connected_gene': 'FLT1P1', 'score': 0.44}]
chr3 GH03I046106 46106833 46116456 1.72 [{'connected_gene': 'CCR1', 'score': 47.17}, {'connected_gene': 'CCRL2', 'score': 28.54}, {'connected_gene': 'CXCR6', 'score': 15.65}, {'connected_gene': 'FYCO1', 'score': 13.47}, {'connected_gene': 'CCR2', 'score': 12.49}, {'connected_gene': 'CCR5', 'score': 9.84}, {'connected_gene': 'CCDC12', 'score': 9.82}, {'connected_gene': 'LIMD1', 'score': 7.59}, {'connected_gene': 'XCR1', 'score': 6.55}, {'connected_gene': 'CCR3', 'score': 5.54}, {'connected_gene': 'SACM1L', 'score': 1.59}, {'connected_gene': 'LOC105377067', 'score': 0.37}, {'connected_gene': 'LOC105377066', 'score': 0.31}]
chr3 GH03I046088 46088602 46101999 1.61 [{'connected_gene': 'CCR1', 'score': 54.73}, {'connected_gene': 'CCRL2', 'score': 52.75}, {'connected_gene': 'CXCR6', 'score': 27.73}, {'connected_gene': 'FYCO1', 'score': 13.5}, {'connected_gene': 'CCR5', 'score': 12.16}, {'connected_gene': 'LOC102724297', 'score': 11.01}, {'connected_gene': 'CCR2', 'score': 10.86}, {'connected_gene': 'CCR3', 'score': 5.17}, {'connected_gene': 'CCDC12', 'score': 4.97}, {'connected_gene': 'LIMD1', 'score': 1.34}, {'connected_gene': 'LOC105377066', 'score': 0.44}, {'connected_gene': 'LOC105377067', 'score': 0.28}]
chr3 GH03I046320 46320682 46322322 1.22 [{'connected_gene': 'CCR1', 'score': 26.75}, {'connected_gene': 'CCR2', 'score': 19.61}, {'connected_gene': 'CCRL2', 'score': 15.38}, {'connected_gene': 'CCR5', 'score': 9.64}, {'connected_gene': 'UQCRC2P1', 'score': 0.44}]
chr3 GH03I046297 46297449 46301928 1.39 [{'connected_gene': 'CCR1', 'score': 25.92}, {'connected_gene': 'CCR2', 'score': 20.23}, {'connected_gene': 'CCR5', 'score': 14.42}, {'connected_gene': 'CCRL2', 'score': 11.45}, {'connected_gene': 'TDGF1', 'score': 9.48}, {'connected_gene': 'LRRC2', 'score': 5.63}, {'connected_gene': 'FYCO1', 'score': 4.29}, {'connected_gene': 'GC03M046310', 'score': 0.39}]
chr3 GH03I046278 46278792 46281031 0.72 [{'connected_gene': 'CCR1', 'score': 19.11}, {'connected_gene': 'CCR2', 'score': 17.06}, {'connected_gene': 'CCR5', 'score': 12.25}, {'connected_gene': 'GC03M046310', 'score': 0.29}]
chr3 GH03I046205 46205342 46205554 0.45 [{'connected_gene': 'CCR1', 'score': 37.0}, {'connected_gene': 'CCR5', 'score': 5.43}, {'connected_gene': 'CCRL2', 'score': 5.17}, {'connected_gene': 'CCR3', 'score': 0.26}]
chr3 GH03I046075 46075306 46075603 0.23 [{'connected_gene': 'CCR1', 'score': 15.42}, {'connected_gene': 'CXCR6', 'score': 12.44}, {'connected_gene': 'LZTFL1', 'score': 10.84}, {'connected_gene': 'CCR2', 'score': 10.07}, {'connected_gene': 'CCR5', 'score': 5.17}, {'connected_gene': 'CCRL2', 'score': 4.07}, {'connected_gene': 'LIMD1', 'score': 1.61}, {'connected_gene': 'LOC105377066', 'score': 0.39}, {'connected_gene': 'XCR1', 'score': 0.25}]
chr3 GH03I045983 45983863 45990096 1.5 [{'connected_gene': 'CXCR6', 'score': 32.6}, {'connected_gene': 'CCRL2', 'score': 21.5}, {'connected_gene': 'FYCO1', 'score': 14.73}, {'connected_gene': 'LZTFL1', 'score': 10.41}, {'connected_gene': 'CCR2', 'score': 9.78}, {'connected_gene': 'CCR5', 'score': 5.82}, {'connected_gene': 'CCR1', 'score': 5.74}, {'connected_gene': 'CCR3', 'score': 4.24}]
chr3 GH03I046132 46132002 46133400 0.81 [{'connected_gene': 'LOC105377067', 'score': 550.77}, {'connected_gene': 'CCR1', 'score': 27.78}, {'connected_gene': 'CCR3', 'score': 21.97}, {'connected_gene': 'FYCO1', 'score': 14.86}, {'connected_gene': 'CCRL2', 'score': 2.48}, {'connected_gene': 'CCR2', 'score': 2.35}, {'connected_gene': 'SACM1L', 'score': 2.33}, {'connected_gene': 'CCR5', 'score': 1.7}, {'connected_gene': 'FLT1P1', 'score': 0.39}]
chr3 GH03I046312 46312958 46313270 0.79 [{'connected_gene': 'UQCRC2P1', 'score': 550.77}, {'connected_gene': 'GC03M046310', 'score': 550.77}, {'connected_gene': 'CCR1', 'score': 23.81}, {'connected_gene': 'CCRL2', 'score': 23.25}, {'connected_gene': 'CCR2', 'score': 11.81}, {'connected_gene': 'CCR5', 'score': 9.69}]
chr3 GH03I046440 46440950 46441179 0.88 [{'connected_gene': 'GC03M046431', 'score': 550.77}, {'connected_gene': 'CCRL2', 'score': 11.75}, {'connected_gene': 'CCR1', 'score': 5.16}, {'connected_gene': 'CCR5', 'score': 4.19}, {'connected_gene': 'GC03M046463', 'score': 0.34}, {'connected_gene': 'GC03M046464', 'score': 0.34}, {'connected_gene': 'LTF', 'score': 0.26}]
chr3 GH03I046373 46373201 46374000 0.58 [{'connected_gene': 'GC03P046375', 'score': 550.77}, {'connected_gene': 'GC03P046374', 'score': 550.77}, {'connected_gene': 'LOC102724297', 'score': 11.21}, {'connected_gene': 'CCRL2', 'score': 11.21}, {'connected_gene': 'CCR1', 'score': 11.1}, {'connected_gene': 'CCR5', 'score': 0.77}]