PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000335968	[[102193800, 102194933], [102197124, 102197239], [102197987, 102198060], [102201914, 102202019], [102211688, 102211789], [102211873, 102211951], [102215802, 102215940], [102224277, 102224440], [102226098, 102226265], [102241288, 102241387], [102242441, 102242588], [102244061, 102244140], [102245885, 102245950], [102248995, 102249113], [102252082, 102252204], [102255042, 102255166], [102261328, 102261525], [102263295, 102263367], [102264293, 102264807]]	[[102194784, 102194933], [102197124, 102197239], [102197987, 102198060], [102201914, 102202019], [102211688, 102211789], [102211873, 102211951], [102215802, 102215940], [102224277, 102224440], [102226098, 102226265], [102241288, 102241387], [102242441, 102242588], [102244061, 102244140], [102245885, 102245950], [102248995, 102249113], [102252082, 102252204], [102255042, 102255166], [102261328, 102261525], [102263295, 102263367], [102264293, 102264590]]
ENST00000558533	[[102194415, 102194933], [102197124, 102197239], [102201914, 102202019], [102211688, 102211789], [102211873, 102211951], [102215802, 102215940], [102224277, 102224440], [102226098, 102226265], [102239533, 102239638], [102241288, 102241387], [102242441, 102242588], [102244061, 102244140], [102245885, 102245950], [102248995, 102249031]]	[[102239617, 102239638], [102241288, 102241387], [102242441, 102242588], [102244061, 102244140], [102245885, 102245950], [102248995, 102249031]]
ENST00000539112	[[102194596, 102194933], [102196069, 102196223], [102197124, 102197239], [102197987, 102198060], [102201914, 102202019], [102211688, 102211789], [102211873, 102211951], [102215802, 102215940], [102224277, 102224440], [102226098, 102226265], [102241288, 102241387], [102242441, 102242588], [102244061, 102244140], [102245885, 102245950], [102248995, 102249113], [102252082, 102252204], [102255042, 102255166], [102261328, 102261525], [102263295, 102263367], [102264293, 102264613]]	[[102196182, 102196223], [102197124, 102197239], [102197987, 102198060], [102201914, 102202019], [102211688, 102211789], [102211873, 102211951], [102215802, 102215940], [102224277, 102224440], [102226098, 102226265], [102241288, 102241387], [102242441, 102242588], [102244061, 102244140], [102245885, 102245950], [102248995, 102249113], [102252082, 102252204], [102255042, 102255166], [102261328, 102261525], [102263295, 102263367], [102264293, 102264590]]
ENST00000557811	[[102235962, 102236242], [102241288, 102241368]]	None
ENST00000559492	[[102194671, 102194933], [102197124, 102197239], [102201914, 102202019], [102204372, 102204645]]	None
ENST00000560150	[[102254880, 102255166], [102261328, 102261377]]	None
NM_152334	[[102193954, 102194933], [102197124, 102197239], [102197987, 102198060], [102201914, 102202019], [102211688, 102211789], [102211873, 102211951], [102215802, 102215940], [102224277, 102224440], [102226098, 102226265], [102241288, 102241387], [102242441, 102242588], [102244061, 102244140], [102245885, 102245950], [102248995, 102249113], [102252082, 102252204], [102255042, 102255166], [102261328, 102261525], [102263295, 102263367], [102264293, 102264645]]	[[102194784, 102194933], [102197124, 102197239], [102197987, 102198060], [102201914, 102202019], [102211688, 102211789], [102211873, 102211951], [102215802, 102215940], [102224277, 102224440], [102226098, 102226265], [102241288, 102241387], [102242441, 102242588], [102244061, 102244140], [102245885, 102245950], [102248995, 102249113], [102252082, 102252204], [102255042, 102255166], [102261328, 102261525], [102263295, 102263367], [102264293, 102264590]]

Promoter

Chrom	Start	End	Description
chr15	102264366	102264388	CAGE_peak_3_at_TARSL2_5end
chr15	102264619	102264697	CAGE_peak_1_at_TARSL2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I101662	101662126	101662444	0.47	[{'connected_gene': 'TM2D3', 'score': 28.89}, {'connected_gene': 'OR4F15', 'score': 1.51}, {'connected_gene': 'TARSL2', 'score': 0.21}]
chr15	GH15I101650	101650860	101653675	2.27	[{'connected_gene': 'TM2D3', 'score': 581.66}, {'connected_gene': 'TARSL2', 'score': 10.68}, {'connected_gene': 'RNU6-807P', 'score': 0.77}]
chr15	GH15I101640	101640665	101643321	1.21	[{'connected_gene': 'TM2D3', 'score': 28.69}, {'connected_gene': 'TARSL2', 'score': 20.07}, {'connected_gene': 'LOC100128108', 'score': 14.61}, {'connected_gene': 'SNRPA1', 'score': 11.53}, {'connected_gene': 'SELENOS', 'score': 11.25}, {'connected_gene': 'RNU6-807P', 'score': 0.44}, {'connected_gene': 'LINC02348', 'score': 0.31}]
chr15	GH15I101683	101683881	101685071	0.67	[{'connected_gene': 'TM2D3', 'score': 27.24}, {'connected_gene': 'TARSL2', 'score': 9.83}]
chr15	GH15I101658	101658058	101658207	0.66	[{'connected_gene': 'TM2D3', 'score': 0.44}, {'connected_gene': 'TARSL2', 'score': 0.2}]
chr15	GH15I101679	101679097	101680770	0.31	[{'connected_gene': 'TM2D3', 'score': 11.83}, {'connected_gene': 'RNU6-807P', 'score': 11.06}, {'connected_gene': 'TARSL2', 'score': 9.85}, {'connected_gene': 'LOC100128108', 'score': 4.87}]
chr15	GH15I101674	101674758	101677585	0.8	[{'connected_gene': 'TM2D3', 'score': 17.21}, {'connected_gene': 'LOC100128108', 'score': 16.05}, {'connected_gene': 'RNU6-807P', 'score': 11.07}, {'connected_gene': 'DNM1P47', 'score': 6.07}, {'connected_gene': 'TARSL2', 'score': 0.25}]
chr15	GH15I101293	101293015	101297693	2.33	[{'connected_gene': 'SNRPA1', 'score': 553.83}, {'connected_gene': 'ENSG00000259172', 'score': 550.77}, {'connected_gene': 'LINS1', 'score': 45.26}, {'connected_gene': 'LOC100419174', 'score': 22.82}, {'connected_gene': 'CERS3-AS1', 'score': 14.01}, {'connected_gene': 'PRKXP1', 'score': 13.86}, {'connected_gene': 'RNU6-807P', 'score': 11.63}, {'connected_gene': 'WASH3P', 'score': 10.95}, {'connected_gene': 'LRRK1', 'score': 10.56}, {'connected_gene': 'ENSG00000270127', 'score': 10.06}, {'connected_gene': 'ASB7', 'score': 10.05}, {'connected_gene': 'TARSL2', 'score': 3.75}, {'connected_gene': 'TM2D3', 'score': 2.09}, {'connected_gene': 'PCSK6', 'score': 0.07}]
chr15	GH15I101813	101813334	101815017	0.49	[{'connected_gene': 'OR4F15', 'score': 550.77}, {'connected_gene': 'LOC100128108', 'score': 12.6}, {'connected_gene': 'WASH3P', 'score': 6.4}, {'connected_gene': 'TARSL2', 'score': 4.63}, {'connected_gene': 'GC15P104612', 'score': 0.77}]
chr15	GH15I101723	101723098	101725150	1.55	[{'connected_gene': 'TARSL2', 'score': 550.77}, {'connected_gene': 'LOC100128108', 'score': 14.64}, {'connected_gene': 'SELENOS', 'score': 10.54}, {'connected_gene': 'TM2D3', 'score': 10.27}, {'connected_gene': 'GC15M101723', 'score': 0.2}]
chr15	GH15I101673	101673282	101673647	0.33	[{'connected_gene': 'RNU6-807P', 'score': 10.94}, {'connected_gene': 'TM2D3', 'score': 0.34}, {'connected_gene': 'TARSL2', 'score': 0.23}]
chr15	GH15I101520	101520460	101520582	0.22	[{'connected_gene': 'RNU6-807P', 'score': 10.7}, {'connected_gene': 'TARSL2', 'score': 2.55}, {'connected_gene': 'PCSK6', 'score': 2.49}, {'connected_gene': 'ENSG00000277210', 'score': 0.77}, {'connected_gene': 'GC15M101488', 'score': 0.44}]
chr15	GH15I101710	101710488	101711537	0.2	[{'connected_gene': 'LOC100128108', 'score': 5.82}, {'connected_gene': 'TARSL2', 'score': 0.39}, {'connected_gene': 'TM2D3', 'score': 0.22}]