Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000357422 [[46205095, 46205354], [46252181, 46252398], [46283892, 46283948], [46306638, 46308106]] [[46306649, 46307717]]
ENST00000541018 [[46283871, 46284029], [46303755, 46303834], [46306638, 46308197]] [[46306649, 46307717]]
ENST00000545097 [[46283871, 46284029], [46305877, 46305946], [46306638, 46308197]] [[46305894, 46305946], [46306638, 46307717]]
ENST00000395940 [[46283921, 46284029], [46306638, 46308111]] [[46306649, 46307717]]
ENST00000452454 [[46283950, 46284029], [46305877, 46305946], [46306638, 46306890]] [[46306649, 46306890]]
ENST00000484025 [[46283951, 46284029], [46305877, 46306235]] None
ENST00000457243 [[46283951, 46284029], [46305877, 46305937], [46306638, 46306712]] [[46306649, 46306712]]
ENST00000475150 [[46304880, 46305946], [46306638, 46306856]] None
ENST00000395942 [[46306618, 46307819]] [[46306649, 46307717]]
NM_178329 [[46283871, 46284029], [46306638, 46308197]] [[46306649, 46307717]]
NM_001164680 [[46283871, 46284029], [46305877, 46305937], [46306638, 46308197]] [[46305894, 46305937], [46306638, 46307717]]
NM_178328 [[46283871, 46284029], [46305877, 46305946], [46306638, 46308197]] [[46305894, 46305946], [46306638, 46307717]]
NM_001837 [[46283871, 46284029], [46303755, 46303834], [46306638, 46308197]] [[46306649, 46307717]]
Promoter
Chrom Start End Description
chr3 46204959 46204979 CAGE_peak_3_at_CCR3_5end
chr3 46205262 46205283 CAGE_peak_5_at_CCR3_5end
chr3 46283839 46283854 CAGE_peak_4_at_CCR3_5end
chr3 46283863 46283874 CAGE_peak_6_at_CCR3_5end
chr3 46283880 46283890 CAGE_peak_7_at_CCR3_5end
chr3 46283916 46283927 CAGE_peak_2_at_CCR3_5end
chr3 46283944 46283958 CAGE_peak_1_at_CCR3_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr3 GH03I046059 46059118 46059858 0.67 [{'connected_gene': 'FYCO1', 'score': 19.33}, {'connected_gene': 'CXCR6', 'score': 10.68}, {'connected_gene': 'CCR3', 'score': 4.48}, {'connected_gene': 'LOC105377066', 'score': 0.31}, {'connected_gene': 'XCR1', 'score': 0.29}]
chr3 GH03I046354 46354801 46357200 0.94 [{'connected_gene': 'CCR2', 'score': 11.68}, {'connected_gene': 'CCR1', 'score': 8.45}, {'connected_gene': 'CCRL2', 'score': 6.14}, {'connected_gene': 'CCR3', 'score': 4.57}, {'connected_gene': 'CCR5', 'score': 0.39}]
chr3 GH03I046282 46282560 46286131 0.69 [{'connected_gene': 'CCR2', 'score': 18.86}, {'connected_gene': 'CCR1', 'score': 9.08}, {'connected_gene': 'CCR3', 'score': 4.75}, {'connected_gene': 'FYCO1', 'score': 4.5}, {'connected_gene': 'GC03M046310', 'score': 0.31}]
chr3 GH03I046221 46221401 46223600 0.94 [{'connected_gene': 'CCR2', 'score': 16.99}, {'connected_gene': 'CCR1', 'score': 11.68}, {'connected_gene': 'CCR3', 'score': 0.22}, {'connected_gene': 'GC03M046310', 'score': 0.17}]
chr3 GH03I045173 45173069 45175848 0.31 [{'connected_gene': 'SLC6A20', 'score': 5.13}, {'connected_gene': 'CCR3', 'score': 3.99}, {'connected_gene': 'RPS24P8', 'score': 0.39}, {'connected_gene': 'LOC101928636', 'score': 0.31}]
chr3 GH03I045269 45269566 45270695 0.89 [{'connected_gene': 'ZNF852', 'score': 13.04}, {'connected_gene': 'TMEM158', 'score': 11.24}, {'connected_gene': 'ZNF35', 'score': 10.77}, {'connected_gene': 'ZDHHC3', 'score': 10.09}, {'connected_gene': 'RN7SL145P', 'score': 10.05}, {'connected_gene': 'ZNF502', 'score': 9.91}, {'connected_gene': 'CCR3', 'score': 4.04}, {'connected_gene': 'ENSG00000202268', 'score': 0.39}, {'connected_gene': 'GC03M045255', 'score': 0.39}, {'connected_gene': 'LOC105377061', 'score': 0.28}]
chr3 GH03I045653 45653300 45657518 1.35 [{'connected_gene': 'SACM1L', 'score': 27.71}, {'connected_gene': 'LIMD1', 'score': 17.85}, {'connected_gene': 'ZNF502', 'score': 13.89}, {'connected_gene': 'RN7SL145P', 'score': 13.82}, {'connected_gene': 'LARS2-AS1', 'score': 11.51}, {'connected_gene': 'LIMD1-AS1', 'score': 11.14}, {'connected_gene': 'CCR3', 'score': 4.59}, {'connected_gene': 'GC03M045664', 'score': 0.44}, {'connected_gene': 'PIR32515', 'score': 0.22}]
chr3 GH03I046236 46236383 46236624 0.66 [{'connected_gene': 'CCR3', 'score': 36.17}, {'connected_gene': 'CCR2', 'score': 12.95}, {'connected_gene': 'CCR1', 'score': 10.83}, {'connected_gene': 'LOC102724297', 'score': 10.73}, {'connected_gene': 'CCRL2', 'score': 10.73}, {'connected_gene': 'GC03M046310', 'score': 0.18}]
chr3 GH03I046161 46161971 46164734 0.89 [{'connected_gene': 'CCR3', 'score': 550.77}, {'connected_gene': 'CCR1', 'score': 14.59}, {'connected_gene': 'CCRL2', 'score': 5.1}, {'connected_gene': 'FLT1P1', 'score': 0.37}, {'connected_gene': 'LOC105377067', 'score': 0.29}]
chr3 GH03I046242 46242411 46242470 0.61 [{'connected_gene': 'CCR3', 'score': 550.18}, {'connected_gene': 'CCR1', 'score': 11.64}, {'connected_gene': 'CCR2', 'score': 11.02}, {'connected_gene': 'LOC102724297', 'score': 10.49}, {'connected_gene': 'CCRL2', 'score': 10.49}, {'connected_gene': 'GC03M046310', 'score': 0.2}]
chr3 GH03I046247 46247887 46247946 0.5 [{'connected_gene': 'CCR3', 'score': 550.18}, {'connected_gene': 'CCR1', 'score': 20.21}, {'connected_gene': 'CCR2', 'score': 11.02}, {'connected_gene': 'LOC102724297', 'score': 10.53}, {'connected_gene': 'CCRL2', 'score': 10.53}, {'connected_gene': 'GC03M046310', 'score': 0.21}]
chr3 GH03I046233 46233269 46233603 0.33 [{'connected_gene': 'CCR3', 'score': 35.12}, {'connected_gene': 'CCR1', 'score': 20.37}, {'connected_gene': 'CCR2', 'score': 13.37}, {'connected_gene': 'GC03M046310', 'score': 0.18}]
chr3 GH03I046191 46191801 46192400 0.92 [{'connected_gene': 'CCR1', 'score': 17.04}, {'connected_gene': 'CCRL2', 'score': 13.31}, {'connected_gene': 'CCR2', 'score': 10.99}, {'connected_gene': 'CCR5', 'score': 3.39}, {'connected_gene': 'CCR3', 'score': 0.31}]
chr3 GH03I046183 46183922 46185304 1.14 [{'connected_gene': 'CCR1', 'score': 30.88}, {'connected_gene': 'CCRL2', 'score': 18.91}, {'connected_gene': 'SETD2', 'score': 13.12}, {'connected_gene': 'RN7SL145P', 'score': 11.84}, {'connected_gene': 'CCDC12', 'score': 10.47}, {'connected_gene': 'CCR5', 'score': 6.01}, {'connected_gene': 'CCR3', 'score': 0.34}, {'connected_gene': 'LOC105377067', 'score': 0.23}]
chr3 GH03I046209 46209817 46209966 0.6 [{'connected_gene': 'CCR1', 'score': 580.22}, {'connected_gene': 'CCRL2', 'score': 25.38}, {'connected_gene': 'CCR5', 'score': 11.37}, {'connected_gene': 'CCR2', 'score': 10.88}, {'connected_gene': 'CCR3', 'score': 0.25}, {'connected_gene': 'GC03M046310', 'score': 0.15}]
chr3 GH03I046212 46212694 46213958 1.22 [{'connected_gene': 'CCR1', 'score': 37.61}, {'connected_gene': 'CCRL2', 'score': 32.22}, {'connected_gene': 'CCR5', 'score': 11.03}, {'connected_gene': 'CCR2', 'score': 10.81}, {'connected_gene': 'LOC102724297', 'score': 9.87}, {'connected_gene': 'RTP3', 'score': 9.53}, {'connected_gene': 'CCR3', 'score': 0.25}, {'connected_gene': 'GC03M046310', 'score': 0.15}]
chr3 GH03I046184 46183381 46183706 0.69 [{'connected_gene': 'CCR1', 'score': 36.32}, {'connected_gene': 'CCRL2', 'score': 13.05}, {'connected_gene': 'CCR5', 'score': 5.29}, {'connected_gene': 'CCR3', 'score': 0.37}, {'connected_gene': 'LOC105377067', 'score': 0.23}]
chr3 GH03I046186 46186514 46187667 1.33 [{'connected_gene': 'CCR1', 'score': 32.46}, {'connected_gene': 'CCRL2', 'score': 10.66}, {'connected_gene': 'CCR5', 'score': 5.7}, {'connected_gene': 'CCR3', 'score': 4.69}, {'connected_gene': 'LOC105377067', 'score': 0.22}]
chr3 GH03I046187 46187949 46188202 0.97 [{'connected_gene': 'CCR1', 'score': 23.53}, {'connected_gene': 'CCRL2', 'score': 17.43}, {'connected_gene': 'CCR5', 'score': 5.65}, {'connected_gene': 'CCR3', 'score': 0.34}, {'connected_gene': 'LOC105377067', 'score': 0.22}]
chr3 GH03I046206 46206450 46209315 2.26 [{'connected_gene': 'CCR1', 'score': 589.2}, {'connected_gene': 'CCRL2', 'score': 21.38}, {'connected_gene': 'CCR5', 'score': 7.14}, {'connected_gene': 'CCR3', 'score': 0.26}]
chr3 GH03I046106 46106833 46116456 1.72 [{'connected_gene': 'CCR1', 'score': 47.17}, {'connected_gene': 'CCRL2', 'score': 28.54}, {'connected_gene': 'CXCR6', 'score': 15.65}, {'connected_gene': 'FYCO1', 'score': 13.47}, {'connected_gene': 'CCR2', 'score': 12.49}, {'connected_gene': 'CCR5', 'score': 9.84}, {'connected_gene': 'CCDC12', 'score': 9.82}, {'connected_gene': 'LIMD1', 'score': 7.59}, {'connected_gene': 'XCR1', 'score': 6.55}, {'connected_gene': 'CCR3', 'score': 5.54}, {'connected_gene': 'SACM1L', 'score': 1.59}, {'connected_gene': 'LOC105377067', 'score': 0.37}, {'connected_gene': 'LOC105377066', 'score': 0.31}]
chr3 GH03I046088 46088602 46101999 1.61 [{'connected_gene': 'CCR1', 'score': 54.73}, {'connected_gene': 'CCRL2', 'score': 52.75}, {'connected_gene': 'CXCR6', 'score': 27.73}, {'connected_gene': 'FYCO1', 'score': 13.5}, {'connected_gene': 'CCR5', 'score': 12.16}, {'connected_gene': 'LOC102724297', 'score': 11.01}, {'connected_gene': 'CCR2', 'score': 10.86}, {'connected_gene': 'CCR3', 'score': 5.17}, {'connected_gene': 'CCDC12', 'score': 4.97}, {'connected_gene': 'LIMD1', 'score': 1.34}, {'connected_gene': 'LOC105377066', 'score': 0.44}, {'connected_gene': 'LOC105377067', 'score': 0.28}]
chr3 GH03I046427 46427291 46430719 1 [{'connected_gene': 'CCR1', 'score': 8.84}, {'connected_gene': 'LRRC2', 'score': 6.2}, {'connected_gene': 'CCRL2', 'score': 5.59}, {'connected_gene': 'TDGF1', 'score': 5.1}, {'connected_gene': 'CCR3', 'score': 4.48}, {'connected_gene': 'LINC02009', 'score': 0.77}, {'connected_gene': 'GC03M046431', 'score': 0.39}]
chr3 GH03I046154 46154117 46155884 0.31 [{'connected_gene': 'CCR1', 'score': 23.66}, {'connected_gene': 'CCR2', 'score': 9.86}, {'connected_gene': 'CCR3', 'score': 0.44}, {'connected_gene': 'FLT1P1', 'score': 0.39}, {'connected_gene': 'LOC105377067', 'score': 0.34}]
chr3 GH03I046227 46227719 46229267 0.77 [{'connected_gene': 'CCR1', 'score': 21.66}, {'connected_gene': 'CCR2', 'score': 10.95}, {'connected_gene': 'CCR3', 'score': 0.21}, {'connected_gene': 'GC03M046310', 'score': 0.18}]
chr3 GH03I046205 46205342 46205554 0.45 [{'connected_gene': 'CCR1', 'score': 37.0}, {'connected_gene': 'CCR5', 'score': 5.43}, {'connected_gene': 'CCRL2', 'score': 5.17}, {'connected_gene': 'CCR3', 'score': 0.26}]
chr3 GH03I046433 46433310 46433459 0.97 [{'connected_gene': 'CCR1', 'score': 7.32}, {'connected_gene': 'CCR3', 'score': 4.27}, {'connected_gene': 'GC03M046431', 'score': 0.44}, {'connected_gene': 'LINC02009', 'score': 0.44}]
chr3 GH03I045983 45983863 45990096 1.5 [{'connected_gene': 'CXCR6', 'score': 32.6}, {'connected_gene': 'CCRL2', 'score': 21.5}, {'connected_gene': 'FYCO1', 'score': 14.73}, {'connected_gene': 'LZTFL1', 'score': 10.41}, {'connected_gene': 'CCR2', 'score': 9.78}, {'connected_gene': 'CCR5', 'score': 5.82}, {'connected_gene': 'CCR1', 'score': 5.74}, {'connected_gene': 'CCR3', 'score': 4.24}]
chr3 GH03I046130 46130002 46131599 0.78 [{'connected_gene': 'LOC105377067', 'score': 550.77}, {'connected_gene': 'CCR1', 'score': 16.55}, {'connected_gene': 'FYCO1', 'score': 12.96}, {'connected_gene': 'CCR3', 'score': 12.01}, {'connected_gene': 'CCR2', 'score': 10.42}, {'connected_gene': 'CCDC12', 'score': 4.26}, {'connected_gene': 'LOC105377066', 'score': 0.26}]
chr3 GH03I046132 46132002 46133400 0.81 [{'connected_gene': 'LOC105377067', 'score': 550.77}, {'connected_gene': 'CCR1', 'score': 27.78}, {'connected_gene': 'CCR3', 'score': 21.97}, {'connected_gene': 'FYCO1', 'score': 14.86}, {'connected_gene': 'CCRL2', 'score': 2.48}, {'connected_gene': 'CCR2', 'score': 2.35}, {'connected_gene': 'SACM1L', 'score': 2.33}, {'connected_gene': 'CCR5', 'score': 1.7}, {'connected_gene': 'FLT1P1', 'score': 0.39}]
chr3 GH03I046085 46085434 46086161 0.2 [{'connected_gene': 'LOC105377066', 'score': 550.77}, {'connected_gene': 'CCR1', 'score': 17.47}, {'connected_gene': 'CXCR6', 'score': 15.66}, {'connected_gene': 'FYCO1', 'score': 13.24}, {'connected_gene': 'CCR2', 'score': 10.95}, {'connected_gene': 'CCR3', 'score': 4.47}, {'connected_gene': 'XCR1', 'score': 0.22}]

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