PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
LGALS8	4	CLCN3	1	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
LYPD3	0	CLCN3	1	affinity chromatography technology	Huttlin EL (2015)	1
CLCN3	1	CLCN3	1	affinity chromatography technology	Gentzsch M (2003)	1
TPCN2	0	CLCN3	1	affinity chromatography technology	Huttlin EL (2017)	1
TRIM25	5	GGA1	0	affinity chromatography technology	Choudhury NR (2017)	1
CFTR	5	CLCN3	1	pull down	Gentzsch M (2003)	1
TRIM25	5	HSPB1	2	affinity chromatography technology	Choudhury NR (2017)	1
GGA1	0	CLCN3	1	affinity chromatography technology	Huttlin EL (2017)	1
TMEM9B	0	CLCN3	1	affinity chromatography technology	Huttlin EL (2017)	1
TRIM25	5	CLCN3	1	affinity chromatography technology	Choudhury NR (2017)	1
GOPC	5	CLCN3	1	pull down	Gentzsch M (2003)	1
SLC9A3R1	2	CLCN3	1	pull down	Gentzsch M (2003)	1
PDZK1	0	CLCN3	1	pull down, affinity chromatography technology	Gentzsch M (2003), Gentzsch M (2003)	2
GGA1	0	TMEM9B	0	affinity chromatography technology	Huttlin EL (2017)	1
CFTR	5	SLC9A3R1	2	pull down, pull down, affinity chromatography technology, affinity chromatography technology, pull down, pull down, pull down, unspecified method, unspecified method, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Hegedues T (2003), Wang S (1998), Wang S (1998), Moyer BD (2000), Gentzsch M (2003), Hall RA (1998), Short DB (1998), Short DB (1998), Short DB (1998), Park M (2002), Park M (2002), Wang X (2006), Pankow S (2015)	13
LGALS3	0	CLCN3	1	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
CFTR	5	GOPC	5	two hybrid, pull down, affinity chromatography technology	Cheng J (2002), Gentzsch M (2003), Cheng J (2002)	3
LGALS9	0	LGALS3	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
HSPB1	2	CLCN3	1	two hybrid	Katsogiannou M (2014)	1
PDZK1	0	SLC9A3R1	2	two hybrid, pull down	Gisler SM (2003), Gisler SM (2003)	2
TRIM25	5	TPCN2	0	affinity chromatography technology	Choudhury NR (2017)	1
LGALS9	0	CLCN3	1	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
CFTR	5	HSPB1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ahner A (2013), Wang X (2006), Gong X (2016), Pankow S (2015)	4
PDZK1	0	CFTR	5	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Gentzsch M (2003), Gentzsch M (2003), Wang S (2000), Li C (2007)	4
CFTR	5	LGALS3	0	affinity chromatography technology	Wang X (2006)	1