PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368851	[[111408780, 111409298], [111493897, 111494042], [111498414, 111498868], [111527794, 111527938], [111540016, 111540245], [111543205, 111544223]]	[[111408955, 111409298], [111493897, 111494042], [111498414, 111498868], [111527794, 111527938], [111540016, 111540245], [111543205, 111543438]]
ENST00000368850	[[111498414, 111498868], [111514495, 111514527], [111527794, 111527938], [111540016, 111540245], [111543205, 111552397]]	[[111527794, 111527938], [111540016, 111540245], [111543205, 111543438]]
ENST00000465319	[[111493897, 111494042], [111494640, 111494728], [111498414, 111498915]]	None
ENST00000439288	[[111493897, 111494042], [111498414, 111498915]]	[[111493897, 111494042], [111498414, 111498889]]
ENST00000419619	[[111493897, 111494042], [111498414, 111498868], [111499604, 111499914]]	[[111493897, 111494042], [111498414, 111498868], [111499604, 111499640]]
NM_018593	[[111408780, 111409298], [111493897, 111494042], [111498414, 111498868], [111527794, 111527938], [111540016, 111540245], [111543205, 111544608]]	[[111408955, 111409298], [111493897, 111494042], [111498414, 111498868], [111527794, 111527938], [111540016, 111540245], [111543205, 111543438]]

Promoter

Chrom	Start	End	Description
chr6	111408668	111408686	CAGE_peak_2_at_SLC16A10_5end
chr6	111408698	111408714	CAGE_peak_1_at_SLC16A10_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I111426	111426470	111428347	1.17	[{'connected_gene': 'MFSD4B', 'score': 9.15}, {'connected_gene': 'SLC16A10', 'score': 8.15}, {'connected_gene': 'TRAF3IP2', 'score': 8.08}, {'connected_gene': 'REV3L', 'score': 8.04}, {'connected_gene': 'BRD7P4', 'score': 0.77}, {'connected_gene': 'REV3L-IT1', 'score': 0.2}]
chr6	GH06I111227	111227796	111229398	0.84	[{'connected_gene': 'MFSD4B', 'score': 20.63}, {'connected_gene': 'ENSG00000231046', 'score': 12.22}, {'connected_gene': 'SLC16A10', 'score': 11.36}, {'connected_gene': 'RNU6-960P', 'score': 10.57}, {'connected_gene': 'CNN2P9', 'score': 10.14}]
chr6	GH06I111175	111175854	111177900	0.6	[{'connected_gene': 'MFSD4B', 'score': 10.01}, {'connected_gene': 'ENSG00000231046', 'score': 0.18}, {'connected_gene': 'SLC16A10', 'score': 0.17}, {'connected_gene': 'RNU6-960P', 'score': 0.17}]
chr6	GH06I111229	111229478	111229627	0.52	[{'connected_gene': 'MFSD4B', 'score': 12.24}, {'connected_gene': 'ENSG00000231046', 'score': 12.24}, {'connected_gene': 'RNU6-960P', 'score': 10.57}, {'connected_gene': 'CNN2P9', 'score': 10.14}, {'connected_gene': 'SLC16A10', 'score': 0.11}]
chr6	GH06I111230	111229631	111231147	0.92	[{'connected_gene': 'MFSD4B', 'score': 22.94}, {'connected_gene': 'ENSG00000231046', 'score': 12.65}, {'connected_gene': 'RNU6-960P', 'score': 10.57}, {'connected_gene': 'CNN2P9', 'score': 10.14}, {'connected_gene': 'ENSG00000255389', 'score': 4.53}, {'connected_gene': 'SLC16A10', 'score': 0.11}]
chr6	GH06I110944	110944238	110945599	1.34	[{'connected_gene': 'RPF2', 'score': 20.17}, {'connected_gene': 'CDK19', 'score': 11.33}, {'connected_gene': 'AMD1', 'score': 4.13}, {'connected_gene': 'SLC16A10', 'score': 3.37}, {'connected_gene': 'GTF3C6', 'score': 0.39}, {'connected_gene': 'LOC442244', 'score': 0.34}]
chr6	GH06I111122	111122323	111124186	0.9	[{'connected_gene': 'TRAF3IP2-AS1', 'score': 10.93}, {'connected_gene': 'MFSD4B', 'score': 7.35}, {'connected_gene': 'RNU6-960P', 'score': 0.29}, {'connected_gene': 'SLC16A10', 'score': 0.28}, {'connected_gene': 'ENSG00000231046', 'score': 0.12}]
chr6	GH06I111405	111405738	111407722	1.29	[{'connected_gene': 'REV3L', 'score': 14.52}, {'connected_gene': 'TRAF3IP2-AS1', 'score': 11.19}, {'connected_gene': 'ENSG00000230177', 'score': 10.99}, {'connected_gene': 'SLC16A10', 'score': 10.64}, {'connected_gene': 'ENSG00000255389', 'score': 10.42}, {'connected_gene': 'TRAF3IP2', 'score': 8.83}, {'connected_gene': 'MFSD4B', 'score': 4.18}, {'connected_gene': 'BRD7P4', 'score': 0.34}, {'connected_gene': 'REV3L-IT1', 'score': 0.25}]
chr6	GH06I111418	111418097	111418411	0.24	[{'connected_gene': 'REV3L', 'score': 3.82}, {'connected_gene': 'SLC16A10', 'score': 3.81}, {'connected_gene': 'TRAF3IP2', 'score': 2.02}, {'connected_gene': 'BRD7P4', 'score': 0.39}, {'connected_gene': 'REV3L-IT1', 'score': 0.22}]
chr6	GH06I110859	110859001	110860200	1.19	[{'connected_gene': 'CNN2P9', 'score': 550.77}, {'connected_gene': 'CDK19', 'score': 10.6}, {'connected_gene': 'AMD1', 'score': 5.77}, {'connected_gene': 'SLC16A10', 'score': 2.47}, {'connected_gene': 'ENSG00000271607', 'score': 0.77}]
chr6	GH06I110873	110873253	110879857	2.58	[{'connected_gene': 'AMD1', 'score': 558.54}, {'connected_gene': 'MFSD4B', 'score': 41.23}, {'connected_gene': 'ENSG00000220506', 'score': 31.34}, {'connected_gene': 'BRD7P4', 'score': 19.45}, {'connected_gene': 'RPF2', 'score': 19.14}, {'connected_gene': 'CDK19', 'score': 19.02}, {'connected_gene': 'CNN2P9', 'score': 18.83}, {'connected_gene': 'FCF1P5', 'score': 18.46}, {'connected_gene': 'GTF3C6', 'score': 11.48}, {'connected_gene': 'RNU6-957P', 'score': 11.06}, {'connected_gene': 'ENSG00000272356', 'score': 10.09}, {'connected_gene': 'CDC40', 'score': 9.86}, {'connected_gene': 'SLC16A10', 'score': 7.15}, {'connected_gene': 'ENSG00000271607', 'score': 0.39}, {'connected_gene': 'GC06P110895', 'score': 0.37}]
chr6	GH06I111113	111113260	111114698	1.19	[{'connected_gene': 'SLC16A10', 'score': 17.07}, {'connected_gene': 'MFSD4B', 'score': 12.45}, {'connected_gene': 'AMD1', 'score': 5.75}, {'connected_gene': 'REV3L', 'score': 2.76}, {'connected_gene': 'TRAF3IP2', 'score': 2.33}, {'connected_gene': 'RNU6-960P', 'score': 0.34}, {'connected_gene': 'ENSG00000231046', 'score': 0.11}]
chr6	GH06I111086	111086838	111089041	2.19	[{'connected_gene': 'SLC16A10', 'score': 560.39}, {'connected_gene': 'MFSD4B', 'score': 9.28}, {'connected_gene': 'AMD1', 'score': 2.95}, {'connected_gene': 'REV3L', 'score': 1.93}, {'connected_gene': 'GC06M111092', 'score': 0.77}]
chr6	GH06I111239	111239157	111239743	0.94	[{'connected_gene': 'SLC16A10', 'score': 18.48}, {'connected_gene': 'REV3L', 'score': 13.67}, {'connected_gene': 'MFSD4B', 'score': 10.27}, {'connected_gene': 'TRAF3IP2-AS1', 'score': 10.25}, {'connected_gene': 'AMD1', 'score': 3.94}, {'connected_gene': 'TRAF3IP2', 'score': 2.49}, {'connected_gene': 'ENSG00000231046', 'score': 0.37}, {'connected_gene': 'RNU6-960P', 'score': 0.11}]
chr6	GH06I111238	111238400	111238801	1.03	[{'connected_gene': 'SLC16A10', 'score': 17.23}, {'connected_gene': 'REV3L', 'score': 11.96}, {'connected_gene': 'TRAF3IP2-AS1', 'score': 10.25}, {'connected_gene': 'ENSG00000230177', 'score': 4.42}, {'connected_gene': 'AMD1', 'score': 4.19}, {'connected_gene': 'TRAF3IP2', 'score': 1.48}, {'connected_gene': 'ENSG00000231046', 'score': 0.34}, {'connected_gene': 'RNU6-960P', 'score': 0.11}]
chr6	GH06I111423	111423277	111423391	0.66	[{'connected_gene': 'SLC16A10', 'score': 11.03}, {'connected_gene': 'REV3L', 'score': 2.57}, {'connected_gene': 'TRAF3IP2', 'score': 1.79}, {'connected_gene': 'BRD7P4', 'score': 0.44}, {'connected_gene': 'REV3L-IT1', 'score': 0.21}]
chr6	GH06I111030	111030001	111030401	0.64	[{'connected_gene': 'SLC16A10', 'score': 11.46}, {'connected_gene': 'GC06P111026', 'score': 0.77}, {'connected_gene': 'GSTM2P1', 'score': 0.37}]
chr6	GH06I111075	111075863	111076800	0.42	[{'connected_gene': 'SLC16A10', 'score': 10.97}, {'connected_gene': 'AMD1', 'score': 3.23}, {'connected_gene': 'REV3L', 'score': 2.08}, {'connected_gene': 'GSTM2P1', 'score': 0.31}]
chr6	GH06I111119	111119962	111120335	0.61	[{'connected_gene': 'SLC16A10', 'score': 16.48}, {'connected_gene': 'AMD1', 'score': 5.47}, {'connected_gene': 'REV3L', 'score': 2.58}, {'connected_gene': 'TRAF3IP2', 'score': 2.15}, {'connected_gene': 'RNU6-960P', 'score': 0.31}, {'connected_gene': 'ENSG00000231046', 'score': 0.12}]
chr6	GH06I110934	110934042	110934360	0.48	[{'connected_gene': 'SLC16A10', 'score': 2.84}, {'connected_gene': 'AMD1', 'score': 2.69}, {'connected_gene': 'LOC442244', 'score': 0.39}, {'connected_gene': 'GTF3C6', 'score': 0.34}]
chr6	GH06I111189	111189189	111190396	0.38	[{'connected_gene': 'SLC16A10', 'score': 13.05}, {'connected_gene': 'RNU6-960P', 'score': 12.53}, {'connected_gene': 'MFSD4B', 'score': 12.24}, {'connected_gene': 'ENSG00000231046', 'score': 0.2}]
chr6	GH06I111061	111061522	111061775	0.66	[{'connected_gene': 'SLC16A10', 'score': 17.29}, {'connected_gene': 'RNU6-960P', 'score': 11.98}, {'connected_gene': 'FYN', 'score': 4.68}, {'connected_gene': 'AMD1', 'score': 2.46}, {'connected_gene': 'REV3L', 'score': 1.46}, {'connected_gene': 'GSTM2P1', 'score': 0.39}]
chr6	GH06I111133	111133571	111135624	0.2	[{'connected_gene': 'SLC16A10', 'score': 17.36}, {'connected_gene': 'RNU6-960P', 'score': 11.35}, {'connected_gene': 'ENSG00000255389', 'score': 4.21}, {'connected_gene': 'ENSG00000231046', 'score': 0.13}]
chr6	GH06I111096	111096358	111096507	0.49	[{'connected_gene': 'SLC16A10', 'score': 0.44}, {'connected_gene': 'RNU6-960P', 'score': 0.44}, {'connected_gene': 'ENSG00000231046', 'score': 0.1}]
chr6	GH06I111210	111210378	111210527	0.59	[{'connected_gene': 'SLC16A10', 'score': 11.7}, {'connected_gene': 'ENSG00000231046', 'score': 0.25}, {'connected_gene': 'RNU6-960P', 'score': 0.13}]
chr6	GH06I110957	110957781	110959801	2.1	[{'connected_gene': 'GTF3C6', 'score': 555.04}, {'connected_gene': 'TRAF3IP2-AS1', 'score': 18.12}, {'connected_gene': 'METTL24', 'score': 13.62}, {'connected_gene': 'ENSG00000220506', 'score': 13.16}, {'connected_gene': 'MFSD4B', 'score': 12.85}, {'connected_gene': 'ENSG00000255389', 'score': 11.87}, {'connected_gene': 'ENSG00000272356', 'score': 10.18}, {'connected_gene': 'FCF1P5', 'score': 10.15}, {'connected_gene': 'RPF2', 'score': 9.58}, {'connected_gene': 'SLC16A10', 'score': 6.45}]
chr6	GH06I110617	110617138	110617495	1.08	[{'connected_gene': 'GTF3C6', 'score': 10.5}, {'connected_gene': 'SLC16A10', 'score': 8.88}, {'connected_gene': 'AMD1', 'score': 3.06}, {'connected_gene': 'LOC100420531', 'score': 0.37}, {'connected_gene': 'LOC100129155', 'score': 0.31}, {'connected_gene': 'CDK19', 'score': 0.08}]
chr6	GH06I111289	111289781	111292676	1.15	[{'connected_gene': 'TRAF3IP2', 'score': 12.05}, {'connected_gene': 'ENSG00000230177', 'score': 9.37}, {'connected_gene': 'REV3L', 'score': 7.42}, {'connected_gene': 'ENSG00000255389', 'score': 6.87}, {'connected_gene': 'MFSD4B', 'score': 5.73}, {'connected_gene': 'AMD1', 'score': 1.77}, {'connected_gene': 'SLC16A10', 'score': 1.21}, {'connected_gene': 'GC06P111298', 'score': 0.77}, {'connected_gene': 'PIR46198', 'score': 0.77}, {'connected_gene': 'PIR44403', 'score': 0.39}]
chr6	GH06I111200	111200038	111201548	0.52	[{'connected_gene': 'RNU6-960P', 'score': 12.14}, {'connected_gene': 'SLC16A10', 'score': 11.87}, {'connected_gene': 'ENSG00000231046', 'score': 0.22}]
chr6	GH06I111131	111131903	111133261	0.2	[{'connected_gene': 'RNU6-960P', 'score': 11.35}, {'connected_gene': 'SLC16A10', 'score': 11.13}, {'connected_gene': 'ENSG00000231046', 'score': 0.13}]
chr6	GH06I111129	111129116	111129289	0.56	[{'connected_gene': 'RNU6-960P', 'score': 11.36}, {'connected_gene': 'SLC16A10', 'score': 11.15}, {'connected_gene': 'ENSG00000231046', 'score': 0.13}]
chr6	GH06I111105	111105202	111106303	1.14	[{'connected_gene': 'ENSG00000255389', 'score': 7.76}, {'connected_gene': 'RNU6-960P', 'score': 0.39}, {'connected_gene': 'SLC16A10', 'score': 0.37}, {'connected_gene': 'ENSG00000231046', 'score': 0.1}]