PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000467021	[[166825746, 166826956], [166827355, 166827518], [166829422, 166829574], [166831439, 166832453]]	None
ENST00000367874	[[166825746, 166826956], [166827355, 166827518], [166829422, 166829574], [166831439, 166831649], [166833060, 166833158], [166838681, 166838747], [166838999, 166839091], [166845396, 166845564]]	[[166826803, 166826956], [166827355, 166827518], [166829422, 166829574], [166831439, 166831649], [166833060, 166833158], [166838681, 166838747], [166838999, 166839091], [166845396, 166845470]]
NM_053053	[[166825746, 166826956], [166827355, 166827518], [166829422, 166829574], [166831439, 166831649], [166833060, 166833158], [166838681, 166838747], [166838999, 166839091], [166845396, 166845654]]	[[166826803, 166826956], [166827355, 166827518], [166829422, 166829574], [166831439, 166831649], [166833060, 166833158], [166838681, 166838747], [166838999, 166839091], [166845396, 166845470]]

Promoter

Chrom	Start	End	Description
chr1	166845467	166845509	CAGE_peak_1_at_TADA1_5end
chr1	166845515	166845538	CAGE_peak_2_at_TADA1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I166904	166904440	166907530	0.59	[{'connected_gene': 'MAEL', 'score': 23.96}, {'connected_gene': 'TADA1', 'score': 11.76}, {'connected_gene': 'LOC105371600', 'score': 11.42}, {'connected_gene': 'DUSP27', 'score': 10.36}, {'connected_gene': 'GPA33', 'score': 10.34}, {'connected_gene': 'ILDR2', 'score': 5.37}, {'connected_gene': 'GC01M166909', 'score': 0.37}, {'connected_gene': 'GC01P166768', 'score': 0.12}]
chr1	GH01I167267	167267601	167268600	1.09	[{'connected_gene': 'POU2F1', 'score': 11.87}, {'connected_gene': 'CREG1', 'score': 10.4}, {'connected_gene': 'TADA1', 'score': 9.81}, {'connected_gene': 'GC01P167371', 'score': 0.15}]
chr1	GH01I167219	167219040	167224496	2.11	[{'connected_gene': 'POU2F1', 'score': 550.77}, {'connected_gene': 'ENSG00000272205', 'score': 550.77}, {'connected_gene': 'LOC284685', 'score': 37.28}, {'connected_gene': 'MPZL1', 'score': 27.89}, {'connected_gene': 'DUTP6', 'score': 21.15}, {'connected_gene': 'TADA1', 'score': 9.75}, {'connected_gene': 'GC01P167371', 'score': 0.11}]
chr1	GH01I167160	167160964	167163761	1.34	[{'connected_gene': 'RPS17P6', 'score': 550.77}, {'connected_gene': 'FAM78B', 'score': 10.48}, {'connected_gene': 'TADA1', 'score': 9.76}, {'connected_gene': 'GC01P167158', 'score': 0.77}, {'connected_gene': 'GPA33', 'score': 0.77}]
chr1	GH01I167116	167116798	167120837	0.6	[{'connected_gene': 'DUSP27', 'score': 16.79}, {'connected_gene': 'GPA33', 'score': 12.22}, {'connected_gene': 'LINC01363', 'score': 11.03}, {'connected_gene': 'LOC105371600', 'score': 10.35}, {'connected_gene': 'TADA1', 'score': 10.2}, {'connected_gene': 'GC01P167158', 'score': 0.28}]
chr1	GH01I166874	166874604	166877001	2.1	[{'connected_gene': 'TADA1', 'score': 561.75}, {'connected_gene': 'MAEL', 'score': 23.17}, {'connected_gene': 'LOC284685', 'score': 17.9}, {'connected_gene': 'MPZL1', 'score': 10.22}, {'connected_gene': 'ILDR2', 'score': 6.14}, {'connected_gene': 'DUTP6', 'score': 0.44}, {'connected_gene': 'GC01P166768', 'score': 0.14}]
chr1	GH01I166901	166901104	166901253	0.2	[{'connected_gene': 'TADA1', 'score': 12.87}, {'connected_gene': 'LOC105371600', 'score': 10.82}, {'connected_gene': 'DUSP27', 'score': 9.99}, {'connected_gene': 'GPA33', 'score': 9.97}, {'connected_gene': 'GC01M166909', 'score': 0.34}, {'connected_gene': 'ILDR2', 'score': 0.17}, {'connected_gene': 'GC01P166768', 'score': 0.12}]
chr1	GH01I166902	166902200	166902613	0.66	[{'connected_gene': 'TADA1', 'score': 12.84}, {'connected_gene': 'LOC105371600', 'score': 10.82}, {'connected_gene': 'DUSP27', 'score': 9.99}, {'connected_gene': 'GPA33', 'score': 9.97}, {'connected_gene': 'GC01M166909', 'score': 0.37}, {'connected_gene': 'ILDR2', 'score': 0.17}, {'connected_gene': 'GC01P166768', 'score': 0.12}]
chr1	GH01I166910	166910504	166910673	0.91	[{'connected_gene': 'LOC105371600', 'score': 11.24}, {'connected_gene': 'TADA1', 'score': 11.22}, {'connected_gene': 'DUSP27', 'score': 9.62}, {'connected_gene': 'GPA33', 'score': 9.6}, {'connected_gene': 'GC01M166909', 'score': 0.39}, {'connected_gene': 'ILDR2', 'score': 0.18}, {'connected_gene': 'GC01P166768', 'score': 0.11}]
chr1	GH01I167059	167059001	167059873	1.23	[{'connected_gene': 'GPA33', 'score': 18.2}, {'connected_gene': 'TADA1', 'score': 10.72}, {'connected_gene': 'DUSP27', 'score': 10.49}, {'connected_gene': 'LOC105371600', 'score': 0.44}, {'connected_gene': 'LOC105371598', 'score': 0.31}]
chr1	GH01I166858	166858852	166859226	0.5	[{'connected_gene': 'DUTP6', 'score': 29.04}, {'connected_gene': 'POU2F1', 'score': 2.23}, {'connected_gene': 'POGK', 'score': 1.61}, {'connected_gene': 'TADA1', 'score': 0.37}, {'connected_gene': 'GC01P166768', 'score': 0.16}]
chr1	GH01I167713	167713201	167717399	1.84	[{'connected_gene': 'TRP-CGG1-1', 'score': 550.77}, {'connected_gene': 'GC01M167716', 'score': 550.77}, {'connected_gene': 'TRP-AGG2-1', 'score': 550.77}, {'connected_gene': 'POU2F1', 'score': 40.15}, {'connected_gene': 'TADA1', 'score': 30.26}, {'connected_gene': 'MPZL1', 'score': 22.24}, {'connected_gene': 'DUTP6', 'score': 13.07}, {'connected_gene': 'CREG1', 'score': 1.57}]
chr1	GH01I166920	166920352	166921533	0.31	[{'connected_gene': 'GC01M166909', 'score': 550.77}, {'connected_gene': 'LOC105371600', 'score': 11.06}, {'connected_gene': 'GPA33', 'score': 9.7}, {'connected_gene': 'TADA1', 'score': 0.26}, {'connected_gene': 'ILDR2', 'score': 0.2}, {'connected_gene': 'GC01P166768', 'score': 0.1}]