PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000361641	[[184020810, 184021024], [184023487, 184023569], [184023861, 184023997], [184041290, 184041432], [184041960, 184043346]]	[[184020889, 184021024], [184023487, 184023569], [184023861, 184023997], [184041290, 184041432], [184041960, 184041981]]
ENST00000485209	[[184020812, 184021024], [184023487, 184023569], [184023861, 184023997], [184027294, 184027374], [184041290, 184041432], [184041960, 184042114]]	[[184020889, 184021024], [184023487, 184023569], [184023861, 184023997], [184027294, 184027301]]
ENST00000533373	[[184020859, 184021024], [184023487, 184023569], [184023861, 184023997], [184041290, 184041328], [184041960, 184042157]]	[[184020889, 184021024], [184023487, 184023569], [184023861, 184023997], [184041290, 184041328], [184041960, 184041974]]
ENST00000367518	[[184020866, 184021024], [184023487, 184023569], [184023861, 184023997], [184039749, 184039946]]	None
ENST00000423085	[[184020879, 184021024], [184023487, 184023569], [184023861, 184023997], [184041960, 184043340]]	[[184020889, 184021024], [184023487, 184023569], [184023861, 184023997], [184041960, 184041997]]
ENST00000462677	[[184020893, 184021024], [184023487, 184023569], [184023861, 184023997], [184039749, 184039866], [184041290, 184041432], [184041960, 184042980]]	[[184020893, 184021024], [184023487, 184023569], [184023861, 184023997], [184039749, 184039810]]
ENST00000457455	[[184023494, 184023569], [184023861, 184024203]]	None
NM_001127394	[[184020784, 184021024], [184023487, 184023569], [184023861, 184023997], [184041960, 184043346]]	[[184020889, 184021024], [184023487, 184023569], [184023861, 184023997], [184041960, 184041997]]
NM_001300766	[[184020784, 184021024], [184023487, 184023569], [184023861, 184023997], [184041290, 184041328], [184041960, 184043346]]	[[184020889, 184021024], [184023487, 184023569], [184023861, 184023997], [184041290, 184041328], [184041960, 184041974]]
NM_052965	[[184020784, 184021024], [184023487, 184023569], [184023861, 184023997], [184041290, 184041432], [184041960, 184043346]]	[[184020889, 184021024], [184023487, 184023569], [184023861, 184023997], [184041290, 184041432], [184041960, 184041981]]
NM_001300764	[[184020784, 184021024], [184023487, 184023569], [184023861, 184023997], [184041290, 184041444], [184041960, 184043346]]	[[184020889, 184021024], [184023487, 184023569], [184023861, 184023997], [184041290, 184041444], [184041960, 184041981]]
NR_023349	[[184020784, 184021024], [184023487, 184023569], [184023861, 184023997], [184039749, 184039866], [184041290, 184041432], [184041960, 184043346]]	None
NR_125335	[[184020784, 184021024], [184023487, 184023569], [184023861, 184023997], [184027294, 184027374], [184041290, 184041432], [184041960, 184043346]]	None

Promoter

Chrom	Start	End	Description
chr1	184020777	184020799	CAGE_peak_2_at_TSEN15_5end
chr1	184020812	184020826	CAGE_peak_3_at_TSEN15_5end
chr1	184020830	184020895	CAGE_peak_1_at_TSEN15_5end
chr1	184020899	184020910	CAGE_peak_4_at_TSEN15_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I184030	184030069	184034642	0.99	[{'connected_gene': 'APOBEC4', 'score': 9.66}, {'connected_gene': 'TSEN15', 'score': 6.45}, {'connected_gene': 'COLGALT2', 'score': 5.36}, {'connected_gene': 'GC01P183964', 'score': 0.2}]
chr1	GH01I183997	183997530	183998775	0.46	[{'connected_gene': 'COLGALT2', 'score': 31.26}, {'connected_gene': 'APOBEC4', 'score': 9.59}, {'connected_gene': 'TSEN15', 'score': 5.23}, {'connected_gene': 'ENSG00000271387', 'score': 4.23}, {'connected_gene': 'GC01P183964', 'score': 0.29}]
chr1	GH01I184036	184036008	184038267	2.5	[{'connected_gene': 'COLGALT2', 'score': 568.33}, {'connected_gene': 'TSEN15', 'score': 7.81}, {'connected_gene': 'RGL1', 'score': 2.97}, {'connected_gene': 'GC01P183964', 'score': 0.19}]
chr1	GH01I183955	183955643	183958542	1.49	[{'connected_gene': 'COLGALT2', 'score': 11.92}, {'connected_gene': 'TSEN15', 'score': 10.28}, {'connected_gene': 'GC01M183940', 'score': 0.44}, {'connected_gene': 'GC01P183964', 'score': 0.44}]
chr1	GH01I184010	184010132	184014461	0.31	[{'connected_gene': 'COLGALT2', 'score': 31.19}, {'connected_gene': 'TSEN15', 'score': 19.21}, {'connected_gene': 'GC01P183964', 'score': 0.25}]
chr1	GH01I184053	184053401	184053800	0.43	[{'connected_gene': 'COLGALT2', 'score': 550.77}, {'connected_gene': 'TSEN15', 'score': 550.77}, {'connected_gene': 'GC01M184052', 'score': 0.34}]
chr1	GH01I184018	184018625	184020245	0.49	[{'connected_gene': 'TSEN15', 'score': 6.57}, {'connected_gene': 'COLGALT2', 'score': 5.22}, {'connected_gene': 'RGL1', 'score': 4.48}, {'connected_gene': 'GC01P183964', 'score': 0.22}]
chr1	GH01I184050	184050440	184053087	2.1	[{'connected_gene': 'TSEN15', 'score': 558.53}, {'connected_gene': 'COLGALT2', 'score': 550.77}, {'connected_gene': 'LAMC1-AS1', 'score': 20.2}, {'connected_gene': 'RNF2', 'score': 17.87}, {'connected_gene': 'ENSG00000271387', 'score': 11.92}, {'connected_gene': 'SMG7', 'score': 10.4}, {'connected_gene': 'LAMC2', 'score': 10.18}, {'connected_gene': 'GC01M184052', 'score': 0.31}]
chr1	GH01I183951	183951880	183954365	0.38	[{'connected_gene': 'TSEN15', 'score': 10.78}, {'connected_gene': 'COLGALT2', 'score': 10.63}, {'connected_gene': 'GC01M183940', 'score': 0.77}, {'connected_gene': 'GC01P183964', 'score': 0.39}]
chr1	GH01I183945	183945166	183946151	0.92	[{'connected_gene': 'TSEN15', 'score': 10.77}, {'connected_gene': 'COLGALT2', 'score': 10.62}, {'connected_gene': 'GC01M183940', 'score': 0.77}, {'connected_gene': 'GC01M183931', 'score': 0.39}]
chr1	GH01I184040	184040706	184042199	0.31	[{'connected_gene': 'TSEN15', 'score': 6.65}, {'connected_gene': 'COLGALT2', 'score': 0.39}, {'connected_gene': 'GC01P183964', 'score': 0.18}]
chr1	GH01I184006	184006589	184007565	0.2	[{'connected_gene': 'TSEN15', 'score': 5.19}, {'connected_gene': 'COLGALT2', 'score': 4.86}, {'connected_gene': 'GC01P183964', 'score': 0.26}]
chr1	GH01I184028	184028913	184029984	0.69	[{'connected_gene': 'TSEN15', 'score': 4.62}, {'connected_gene': 'COLGALT2', 'score': 0.34}, {'connected_gene': 'GC01P183964', 'score': 0.2}]
chr1	GH01I184024	184024716	184026036	1.01	[{'connected_gene': 'TSEN15', 'score': 4.92}, {'connected_gene': 'COLGALT2', 'score': 0.31}, {'connected_gene': 'GC01P183964', 'score': 0.21}]
chr1	GH01I183985	183985575	183986152	0.2	[{'connected_gene': 'TSEN15', 'score': 5.48}, {'connected_gene': 'GC01P183964', 'score': 0.34}, {'connected_gene': 'COLGALT2', 'score': 0.2}]
chr1	GH01I184021	184021341	184023528	0.74	[{'connected_gene': 'TSEN15', 'score': 6.69}, {'connected_gene': 'COLGALT2', 'score': 0.31}, {'connected_gene': 'GC01P183964', 'score': 0.22}]
chr1	GH01I184191	184190975	184192056	0.31	[{'connected_gene': 'TSEN15', 'score': 4.11}, {'connected_gene': 'ENSG00000199840', 'score': 0.37}, {'connected_gene': 'GC01M184171', 'score': 0.37}, {'connected_gene': 'LOC102724846', 'score': 0.34}]
chr1	GH01I184158	184158028	184164889	1.36	[{'connected_gene': 'TSEN15', 'score': 6.88}, {'connected_gene': 'ENSG00000199840', 'score': 0.39}, {'connected_gene': 'GC01M184171', 'score': 0.39}, {'connected_gene': 'LOC102724830', 'score': 0.25}]
chr1	GH01I184150	184150662	184153999	0.66	[{'connected_gene': 'TSEN15', 'score': 6.89}, {'connected_gene': 'ENSG00000199840', 'score': 0.37}, {'connected_gene': 'GC01M184171', 'score': 0.37}, {'connected_gene': 'LOC102724830', 'score': 0.28}]
chr1	GH01I184078	184078383	184079596	0.54	[{'connected_gene': 'TSEN15', 'score': 4.77}, {'connected_gene': 'GC01M184052', 'score': 0.77}, {'connected_gene': 'GC01P184096', 'score': 0.37}]
chr1	GH01I184059	184059630	184061568	0.49	[{'connected_gene': 'TSEN15', 'score': 14.81}, {'connected_gene': 'GC01M184052', 'score': 0.37}]
chr1	GH01I184061	184061747	184061916	0.56	[{'connected_gene': 'TSEN15', 'score': 0.39}, {'connected_gene': 'GC01M184052', 'score': 0.37}]
chr1	GH01I184056	184056165	184058052	0.66	[{'connected_gene': 'TSEN15', 'score': 0.44}, {'connected_gene': 'GC01M184052', 'score': 0.37}]
chr1	GH01I184064	184064569	184064902	0.33	[{'connected_gene': 'TSEN15', 'score': 4.8}, {'connected_gene': 'GC01M184052', 'score': 0.39}]
chr1	GH01I183984	183984608	183985007	0.38	[{'connected_gene': 'LAMC1-AS1', 'score': 12.71}, {'connected_gene': 'EDEM3', 'score': 9.67}, {'connected_gene': 'TSEN15', 'score': 5.48}, {'connected_gene': 'GC01P183964', 'score': 0.34}, {'connected_gene': 'COLGALT2', 'score': 0.2}]
chr1	GH01I184113	184113427	184113576	0.31	[{'connected_gene': 'LOC102724830', 'score': 550.77}, {'connected_gene': 'TSEN15', 'score': 6.99}, {'connected_gene': 'ENSG00000199840', 'score': 0.22}, {'connected_gene': 'GC01M184171', 'score': 0.22}]