PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000315901	[[10057263, 10057389], [10064150, 10064365], [10067627, 10067806], [10068230, 10068332], [10075839, 10076078]]	[[10057316, 10057389], [10064150, 10064257]]
ENST00000294435	[[10057273, 10057389], [10067627, 10067806], [10068230, 10068332], [10075839, 10076078]]	[[10057316, 10057389], [10067627, 10067806], [10068230, 10068332], [10075839, 10075890]]
NM_052960	[[10057254, 10057389], [10067627, 10067806], [10068230, 10068332], [10075839, 10076078]]	[[10057316, 10057389], [10067627, 10067806], [10068230, 10068332], [10075839, 10075890]]
NR_138250	[[10057254, 10057389], [10064150, 10064365], [10067627, 10067806], [10068230, 10068332], [10075839, 10076078]]	None

Promoter

Chrom	Start	End	Description
chr1	10057107	10057116	CAGE_peak_5_at_RBP7_5end
chr1	10057123	10057149	CAGE_peak_3_at_RBP7_5end
chr1	10057236	10057248	CAGE_peak_4_at_RBP7_5end
chr1	10057249	10057268	CAGE_peak_2_at_RBP7_5end
chr1	10057278	10057296	CAGE_peak_1_at_RBP7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I009942	9942021	9944401	2.13	[{'connected_gene': 'LZIC', 'score': 571.87}, {'connected_gene': 'NMNAT1', 'score': 558.65}, {'connected_gene': 'ENSG00000228150', 'score': 550.77}, {'connected_gene': 'MIR34AHG', 'score': 18.71}, {'connected_gene': 'GPR157', 'score': 14.43}, {'connected_gene': 'CASZ1', 'score': 13.32}, {'connected_gene': 'RBP7', 'score': 5.1}]
chr1	GH01I009949	9949802	9951893	1.11	[{'connected_gene': 'LZIC', 'score': 21.53}, {'connected_gene': 'RBP7', 'score': 4.86}, {'connected_gene': 'RN7SKP269', 'score': 0.77}, {'connected_gene': 'ENSG00000228150', 'score': 0.44}, {'connected_gene': 'ENSG00000283611', 'score': 0.44}, {'connected_gene': 'NMNAT1', 'score': 0.44}]
chr1	GH01I009712	9712075	9720417	1.47	[{'connected_gene': 'GPR157', 'score': 14.44}, {'connected_gene': 'CLSTN1', 'score': 5.51}, {'connected_gene': 'RBP7', 'score': 5.51}, {'connected_gene': 'PIK3CD-AS2', 'score': 0.31}, {'connected_gene': 'MZT1P1', 'score': 0.21}, {'connected_gene': 'PIK3CD', 'score': 0.17}]
chr1	GH01I009881	9881546	9883206	0.63	[{'connected_gene': 'CTNNBIP1', 'score': 23.26}, {'connected_gene': 'ENSG00000223989', 'score': 12.25}, {'connected_gene': 'ENSG00000228150', 'score': 11.24}, {'connected_gene': 'LZIC', 'score': 11.24}, {'connected_gene': 'RN7SKP269', 'score': 11.24}, {'connected_gene': 'NMNAT1', 'score': 11.24}, {'connected_gene': 'RBP7', 'score': 6.24}, {'connected_gene': 'PIR35071', 'score': 0.44}]
chr1	GH01I009869	9869553	9870537	0.63	[{'connected_gene': 'CTNNBIP1', 'score': 15.42}, {'connected_gene': 'RBP7', 'score': 6.16}, {'connected_gene': 'PIR35071', 'score': 0.44}, {'connected_gene': 'LOC105376717', 'score': 0.37}]
chr1	GH01I009908	9908739	9912936	2.24	[{'connected_gene': 'CTNNBIP1', 'score': 564.06}, {'connected_gene': 'RBP7', 'score': 6.58}, {'connected_gene': 'GC01M009926', 'score': 0.37}]
chr1	GH01I010521	10521133	10523679	0.54	[{'connected_gene': 'PEX14', 'score': 17.28}, {'connected_gene': 'DFFA', 'score': 10.11}, {'connected_gene': 'C1orf127', 'score': 9.68}, {'connected_gene': 'RBP7', 'score': 5.81}, {'connected_gene': 'GC01P010513', 'score': 0.44}, {'connected_gene': 'PIR58493', 'score': 0.37}]
chr1	GH01I010471	10471244	10473863	2.1	[{'connected_gene': 'PEX14', 'score': 550.77}, {'connected_gene': 'DFFA', 'score': 550.77}, {'connected_gene': 'RBP7', 'score': 6.01}]
chr1	GH01I009369	9369550	9377696	1.47	[{'connected_gene': 'MIR34A', 'score': 10.31}, {'connected_gene': 'RBP7', 'score': 6.42}, {'connected_gene': 'ENSG00000284652', 'score': 0.25}, {'connected_gene': 'SPSB1', 'score': 0.18}]
chr1	GH01I010124	10124839	10134344	0.43	[{'connected_gene': 'PGD', 'score': 13.01}, {'connected_gene': 'RNU6-828P', 'score': 11.84}, {'connected_gene': 'RN7SKP269', 'score': 11.18}, {'connected_gene': 'LZIC', 'score': 11.18}, {'connected_gene': 'ENSG00000228150', 'score': 11.18}, {'connected_gene': 'NMNAT1', 'score': 11.18}, {'connected_gene': 'UBE4B', 'score': 10.73}, {'connected_gene': 'RNU6-37P', 'score': 10.33}, {'connected_gene': 'ENSG00000223989', 'score': 10.11}, {'connected_gene': 'CTNNBIP1', 'score': 10.08}, {'connected_gene': 'RBP7', 'score': 5.45}, {'connected_gene': 'CENPS', 'score': 4.54}, {'connected_gene': 'PGAM1P11', 'score': 0.19}]
chr1	GH01I010662	10662487	10690510	2.45	[{'connected_gene': 'TARDBP', 'score': 37.65}, {'connected_gene': 'ENSG00000226849', 'score': 28.33}, {'connected_gene': 'EXOSC10', 'score': 24.53}, {'connected_gene': 'MTOR', 'score': 11.14}, {'connected_gene': 'ENSG00000271895', 'score': 10.46}, {'connected_gene': 'C1orf127', 'score': 10.42}, {'connected_gene': 'DFFA', 'score': 10.08}, {'connected_gene': 'PGD', 'score': 4.47}, {'connected_gene': 'RBP7', 'score': 4.42}, {'connected_gene': 'CASZ1', 'score': 1.6}, {'connected_gene': 'GC01P010673', 'score': 0.77}]
chr1	GH01I010208	10208192	10214199	2.77	[{'connected_gene': 'KIF1B', 'score': 566.53}, {'connected_gene': 'PGD', 'score': 23.67}, {'connected_gene': 'LZIC', 'score': 12.22}, {'connected_gene': 'RNU6-37P', 'score': 11.47}, {'connected_gene': 'RBP7', 'score': 1.38}, {'connected_gene': 'MIR1273D', 'score': 0.37}]
chr1	GH01I009835	9835160	9837371	1.09	[{'connected_gene': 'CLSTN1', 'score': 10.19}, {'connected_gene': 'CTNNBIP1', 'score': 6.13}, {'connected_gene': 'RBP7', 'score': 5.03}, {'connected_gene': 'ENSG00000280113', 'score': 0.44}, {'connected_gene': 'ENSG00000223989', 'score': 0.39}]
chr1	GH01I009703	9703977	9705725	1.13	[{'connected_gene': 'PIK3CD', 'score': 12.63}, {'connected_gene': 'UBE4B', 'score': 1.36}, {'connected_gene': 'RBP7', 'score': 1.24}, {'connected_gene': 'PIK3CD-AS2', 'score': 0.37}, {'connected_gene': 'MZT1P1', 'score': 0.18}]
chr1	GH01I010655	10655442	10660749	0.56	[{'connected_gene': 'C1orf127', 'score': 10.42}, {'connected_gene': 'CENPS', 'score': 5.8}, {'connected_gene': 'PGD', 'score': 5.42}, {'connected_gene': 'RBP7', 'score': 4.39}, {'connected_gene': 'ENSG00000272078', 'score': 0.37}, {'connected_gene': 'GC01P010673', 'score': 0.37}, {'connected_gene': 'CASZ1', 'score': 0.12}]
chr1	GH01I009811	9811198	9811854	0.49	[{'connected_gene': 'RBP7', 'score': 5.49}, {'connected_gene': 'CLSTN1', 'score': 0.39}, {'connected_gene': 'MZT1P1', 'score': 0.29}]
chr1	GH01I009770	9770423	9770552	0.31	[{'connected_gene': 'RBP7', 'score': 5.0}, {'connected_gene': 'MZT1P1', 'score': 0.39}, {'connected_gene': 'CLSTN1', 'score': 0.23}, {'connected_gene': 'PIK3CD-AS2', 'score': 0.18}]
chr1	GH01I009872	9872090	9874004	0.66	[{'connected_gene': 'RBP7', 'score': 6.16}, {'connected_gene': 'PIR35071', 'score': 0.77}, {'connected_gene': 'LOC105376717', 'score': 0.34}, {'connected_gene': 'CTNNBIP1', 'score': 0.28}]
chr1	GH01I009860	9860569	9861664	0.46	[{'connected_gene': 'RBP7', 'score': 6.48}, {'connected_gene': 'PIR35071', 'score': 0.39}, {'connected_gene': 'LOC105376717', 'score': 0.39}, {'connected_gene': 'CTNNBIP1', 'score': 0.25}]
chr1	GH01I009997	9997179	9998001	1.5	[{'connected_gene': 'RBP7', 'score': 566.87}, {'connected_gene': 'UBE4B', 'score': 12.14}, {'connected_gene': 'LZIC', 'score': 11.49}, {'connected_gene': 'RN7SKP269', 'score': 11.49}, {'connected_gene': 'ENSG00000228150', 'score': 11.49}, {'connected_gene': 'NMNAT1', 'score': 11.49}, {'connected_gene': 'CTNNBIP1', 'score': 11.26}, {'connected_gene': 'RNU6-828P', 'score': 10.4}, {'connected_gene': 'GC01P010029', 'score': 0.29}]
chr1	GH01I009990	9990401	9991600	0.69	[{'connected_gene': 'RBP7', 'score': 11.9}, {'connected_gene': 'UBE4B', 'score': 11.77}, {'connected_gene': 'RN7SKP269', 'score': 11.38}, {'connected_gene': 'LZIC', 'score': 11.36}, {'connected_gene': 'ENSG00000228150', 'score': 11.36}, {'connected_gene': 'NMNAT1', 'score': 11.36}, {'connected_gene': 'CTNNBIP1', 'score': 10.31}, {'connected_gene': 'ENSG00000241326', 'score': 0.44}]
chr1	GH01I009842	9842692	9844121	0.76	[{'connected_gene': 'RBP7', 'score': 4.41}, {'connected_gene': 'ENSG00000223989', 'score': 0.77}, {'connected_gene': 'ENSG00000280113', 'score': 0.37}]
chr1	GH01I010507	10507201	10518285	1.85	[{'connected_gene': 'GC01P010513', 'score': 550.77}, {'connected_gene': 'PGD', 'score': 15.43}, {'connected_gene': 'NMNAT1', 'score': 10.48}, {'connected_gene': 'PEX14', 'score': 7.03}, {'connected_gene': 'ENSG00000271989', 'score': 6.94}, {'connected_gene': 'RBP7', 'score': 5.82}, {'connected_gene': 'DFFA', 'score': 0.26}]
chr1	GH01I010637	10637962	10638870	0.31	[{'connected_gene': 'ENSG00000272078', 'score': 550.77}, {'connected_gene': 'RBP7', 'score': 4.95}, {'connected_gene': 'GC01P010626', 'score': 0.39}, {'connected_gene': 'CASZ1', 'score': 0.1}]
chr1	GH01I010031	10031258	10035470	2.28	[{'connected_gene': 'PIR54123', 'score': 550.77}, {'connected_gene': 'GC01M010031', 'score': 550.77}, {'connected_gene': 'UBE4B', 'score': 550.77}, {'connected_gene': 'TARDBP', 'score': 19.36}, {'connected_gene': 'LZIC', 'score': 14.77}, {'connected_gene': 'GPR157', 'score': 14.43}, {'connected_gene': 'CASZ1', 'score': 13.32}, {'connected_gene': 'KIF1B', 'score': 5.04}, {'connected_gene': 'RBP7', 'score': 4.9}, {'connected_gene': 'PGD', 'score': 4.68}, {'connected_gene': 'RPL21P21', 'score': 0.34}]
chr1	GH01I009928	9928494	9930643	1.2	[{'connected_gene': 'PIR60952', 'score': 550.77}, {'connected_gene': 'GC01M009929', 'score': 550.77}, {'connected_gene': 'UBE4B', 'score': 10.79}, {'connected_gene': 'ENSG00000223989', 'score': 10.65}, {'connected_gene': 'RNU6-828P', 'score': 10.21}, {'connected_gene': 'RBP7', 'score': 4.82}, {'connected_gene': 'LZIC', 'score': 0.39}, {'connected_gene': 'ENSG00000228150', 'score': 0.39}, {'connected_gene': 'NMNAT1', 'score': 0.39}]