PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000295628	[[120043355, 120050255], [120053708, 120053986], [120054671, 120054800], [120067590, 120068186]]	[[120050046, 120050255], [120053708, 120053986], [120054671, 120054800], [120067590, 120068090]]
NM_001099678	[[120043575, 120050255], [120053708, 120053986], [120054671, 120054800], [120067590, 120068186]]	[[120050046, 120050255], [120053708, 120053986], [120054671, 120054800], [120067590, 120068090]]

Promoter

Chrom	Start	End	Description
chr3	120068115	120068136	CAGE_peak_2_at_LRRC58_5end
chr3	120068143	120068209	CAGE_peak_1_at_LRRC58_5end
chr3	120068226	120068237	CAGE_peak_5_at_LRRC58_5end
chr3	120068248	120068259	CAGE_peak_3_at_LRRC58_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I119715	119715720	119718227	0.98	[{'connected_gene': 'MAATS1', 'score': 33.23}, {'connected_gene': 'ENSG00000239994', 'score': 12.33}, {'connected_gene': 'RPL10P7', 'score': 6.35}, {'connected_gene': 'PLA1A', 'score': 5.23}, {'connected_gene': 'LRRC58', 'score': 4.49}, {'connected_gene': 'NR1I2', 'score': 2.66}]
chr3	GH03I119699	119699765	119701753	1	[{'connected_gene': 'MAATS1', 'score': 33.95}, {'connected_gene': 'ENSG00000239994', 'score': 10.38}, {'connected_gene': 'LRRC58', 'score': 5.25}, {'connected_gene': 'PLA1A', 'score': 5.13}, {'connected_gene': 'LOC105374064', 'score': 0.77}, {'connected_gene': 'PIR40954', 'score': 0.39}]
chr3	GH03I119702	119702494	119703543	1.75	[{'connected_gene': 'MAATS1', 'score': 583.95}, {'connected_gene': 'LOC105374064', 'score': 550.77}, {'connected_gene': 'LRRC58', 'score': 4.54}]
chr3	GH03I120404	120404400	120406975	0.2	[{'connected_gene': 'GPR156', 'score': 6.38}, {'connected_gene': 'LRRC58', 'score': 4.69}, {'connected_gene': 'MIR198', 'score': 0.44}, {'connected_gene': 'FSTL1', 'score': 0.25}, {'connected_gene': 'LOC100130701', 'score': 0.22}]
chr3	GH03I120344	120344330	120344767	0.49	[{'connected_gene': 'GPR156', 'score': 11.12}, {'connected_gene': 'LRRC58', 'score': 0.77}, {'connected_gene': 'GC03M120325', 'score': 0.37}]
chr3	GH03I120341	120341714	120341803	0.43	[{'connected_gene': 'GPR156', 'score': 11.12}, {'connected_gene': 'LRRC58', 'score': 0.44}, {'connected_gene': 'GC03M120325', 'score': 0.39}]
chr3	GH03I120416	120416037	120422714	1.36	[{'connected_gene': 'GPR156', 'score': 23.96}, {'connected_gene': 'FSTL1', 'score': 13.26}, {'connected_gene': 'LOC100130701', 'score': 7.58}, {'connected_gene': 'LRRC58', 'score': 6.29}, {'connected_gene': 'MIR198', 'score': 0.34}]
chr3	GH03I120412	120412681	120413840	0.2	[{'connected_gene': 'LRRC58', 'score': 6.25}, {'connected_gene': 'GPR156', 'score': 5.16}, {'connected_gene': 'MIR198', 'score': 0.37}, {'connected_gene': 'FSTL1', 'score': 0.28}, {'connected_gene': 'LOC100130701', 'score': 0.21}]
chr3	GH03I120467	120467938	120474121	1.15	[{'connected_gene': 'LRRC58', 'score': 9.81}, {'connected_gene': 'RPL34P9', 'score': 6.1}, {'connected_gene': 'ADPRH', 'score': 5.64}, {'connected_gene': 'ENSG00000240774', 'score': 0.39}, {'connected_gene': 'FSTL1', 'score': 0.37}]
chr3	GH03I120346	120346523	120346845	0.22	[{'connected_gene': 'LRRC58', 'score': 0.77}, {'connected_gene': 'GC03M120325', 'score': 0.37}]
chr3	GH03I120422	120422912	120428399	0.86	[{'connected_gene': 'FSTL1', 'score': 12.96}, {'connected_gene': 'GPR156', 'score': 12.14}, {'connected_gene': 'LOC100130701', 'score': 7.46}, {'connected_gene': 'LRRC58', 'score': 4.71}, {'connected_gene': 'GSK3B', 'score': 4.42}, {'connected_gene': 'ADPRH', 'score': 4.13}, {'connected_gene': 'MIR198', 'score': 0.31}]
chr3	GH03I120347	120347723	120351131	2.04	[{'connected_gene': 'LOC100130701', 'score': 575.85}, {'connected_gene': 'LRRC58', 'score': 550.77}, {'connected_gene': 'GPR156', 'score': 18.99}, {'connected_gene': 'TMEM39A', 'score': 11.91}, {'connected_gene': 'MAATS1', 'score': 10.11}, {'connected_gene': 'LOC442087', 'score': 5.63}]