PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000291232	[[42321044, 42321558], [42322104, 42322335], [42322641, 42322822]]	[[42321370, 42321558], [42322104, 42322335], [42322641, 42322777]]
NM_052945	[[42321035, 42321558], [42322104, 42322335], [42322641, 42322821]]	[[42321370, 42321558], [42322104, 42322335], [42322641, 42322777]]

Promoter

Chrom	Start	End	Description
chr22	42322795	42322821	CAGE_peak_1_at_TNFRSF13C_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr22	GH22I041907	41907572	41911803	1.35	[{'connected_gene': 'SMDT1', 'score': 10.55}, {'connected_gene': 'CENPM', 'score': 6.57}, {'connected_gene': 'TNFRSF13C', 'score': 6.17}, {'connected_gene': 'CSDC2', 'score': 4.09}, {'connected_gene': 'SHISA8', 'score': 2.24}, {'connected_gene': 'TOB2', 'score': 1.29}, {'connected_gene': 'GC22P041968', 'score': 0.77}]
chr22	GH22I041890	41890848	41892494	0.2	[{'connected_gene': 'CENPM', 'score': 11.71}, {'connected_gene': 'TNFRSF13C', 'score': 11.52}, {'connected_gene': 'SNU13', 'score': 10.84}, {'connected_gene': 'C22orf46', 'score': 10.84}, {'connected_gene': 'RNU6ATAC22P', 'score': 10.51}, {'connected_gene': 'WBP2NL', 'score': 9.28}, {'connected_gene': 'SMDT1', 'score': 6.59}, {'connected_gene': 'ENSG00000227370', 'score': 5.64}, {'connected_gene': 'MIR33A', 'score': 0.44}, {'connected_gene': 'SREBF2', 'score': 0.22}, {'connected_gene': 'ENSG00000184068', 'score': 0.22}]
chr22	GH22I041931	41931335	41942006	2.13	[{'connected_gene': 'CENPM', 'score': 563.89}, {'connected_gene': 'GC22P041963', 'score': 550.77}, {'connected_gene': 'TNFRSF13C', 'score': 40.9}, {'connected_gene': 'MEI1', 'score': 15.34}, {'connected_gene': 'SMDT1', 'score': 15.11}, {'connected_gene': 'CYP2D6', 'score': 14.04}, {'connected_gene': 'SHISA8', 'score': 5.12}, {'connected_gene': 'CSDC2', 'score': 3.96}]
chr22	GH22I041897	41897802	41900194	0.63	[{'connected_gene': 'MIR33A', 'score': 550.77}, {'connected_gene': 'NDUFA6', 'score': 31.08}, {'connected_gene': 'TNFRSF13C', 'score': 17.62}, {'connected_gene': 'CYP2D6', 'score': 11.29}, {'connected_gene': 'CENPM', 'score': 11.23}, {'connected_gene': 'SNU13', 'score': 10.57}, {'connected_gene': 'C22orf46', 'score': 10.57}, {'connected_gene': 'SMDT1', 'score': 10.55}, {'connected_gene': 'RNU6ATAC22P', 'score': 10.37}, {'connected_gene': 'WBP2NL', 'score': 4.58}, {'connected_gene': 'ENSG00000184068', 'score': 0.21}, {'connected_gene': 'SREBF2', 'score': 0.2}]
chr22	GH22I041892	41892580	41895239	0.31	[{'connected_gene': 'MEI1', 'score': 12.68}, {'connected_gene': 'CENPM', 'score': 11.22}, {'connected_gene': 'SNU13', 'score': 10.57}, {'connected_gene': 'C22orf46', 'score': 10.57}, {'connected_gene': 'SMDT1', 'score': 10.54}, {'connected_gene': 'RNU6ATAC22P', 'score': 10.37}, {'connected_gene': 'TNFRSF13C', 'score': 6.11}, {'connected_gene': 'WBP2NL', 'score': 4.54}, {'connected_gene': 'MIR33A', 'score': 0.44}, {'connected_gene': 'ENSG00000184068', 'score': 0.22}, {'connected_gene': 'SREBF2', 'score': 0.21}]
chr22	GH22I041856	41856188	41863840	1.51	[{'connected_gene': 'MEI1', 'score': 25.9}, {'connected_gene': 'CYP2D6', 'score': 16.11}, {'connected_gene': 'CENPM', 'score': 13.66}, {'connected_gene': 'SREBF2', 'score': 12.89}, {'connected_gene': 'ENSG00000184068', 'score': 12.89}, {'connected_gene': 'TNFRSF13C', 'score': 11.69}, {'connected_gene': 'RNU6ATAC22P', 'score': 10.74}, {'connected_gene': 'NDUFA6', 'score': 5.56}, {'connected_gene': 'POLR3H', 'score': 4.23}, {'connected_gene': 'SMDT1', 'score': 4.14}, {'connected_gene': 'MIR33A', 'score': 0.26}]
chr22	GH22I041918	41918801	41929794	2.63	[{'connected_gene': 'TNFRSF13C', 'score': 566.18}, {'connected_gene': 'MIR378I', 'score': 550.77}, {'connected_gene': 'GC22M042615', 'score': 550.77}, {'connected_gene': 'NDUFA6', 'score': 31.31}, {'connected_gene': 'SMDT1', 'score': 18.11}, {'connected_gene': 'CYP2D8P', 'score': 7.97}, {'connected_gene': 'CSDC2', 'score': 5.22}, {'connected_gene': 'CENPM', 'score': 4.5}, {'connected_gene': 'SHISA8', 'score': 3.41}]
chr22	GH22I041884	41884859	41886453	0.51	[{'connected_gene': 'CYP2D6', 'score': 16.74}, {'connected_gene': 'SHISA8', 'score': 12.74}, {'connected_gene': 'SREBF2', 'score': 12.66}, {'connected_gene': 'TNFRSF13C', 'score': 11.4}, {'connected_gene': 'CENPM', 'score': 11.03}, {'connected_gene': 'RNU6ATAC22P', 'score': 10.6}, {'connected_gene': 'SMDT1', 'score': 5.61}, {'connected_gene': 'MIR33A', 'score': 0.37}, {'connected_gene': 'ENSG00000184068', 'score': 0.23}]
chr22	GH22I041883	41883419	41884746	0.79	[{'connected_gene': 'CYP2D6', 'score': 15.49}, {'connected_gene': 'SHISA8', 'score': 12.94}, {'connected_gene': 'SREBF2', 'score': 12.88}, {'connected_gene': 'TNFRSF13C', 'score': 11.41}, {'connected_gene': 'CENPM', 'score': 11.31}, {'connected_gene': 'RNU6ATAC22P', 'score': 10.99}, {'connected_gene': 'WBP2NL', 'score': 10.28}, {'connected_gene': 'SMDT1', 'score': 8.62}, {'connected_gene': 'MEI1', 'score': 6.64}, {'connected_gene': 'NDUFA6', 'score': 5.66}, {'connected_gene': 'MIR33A', 'score': 0.37}, {'connected_gene': 'ENSG00000184068', 'score': 0.25}]
chr22	GH22I041843	41843300	41845674	1.11	[{'connected_gene': 'CYP2D6', 'score': 14.93}, {'connected_gene': 'MEI1', 'score': 14.56}, {'connected_gene': 'TNFRSF13C', 'score': 11.89}, {'connected_gene': 'RNU6ATAC22P', 'score': 11.03}, {'connected_gene': 'CENPM', 'score': 10.96}, {'connected_gene': 'NDUFA6', 'score': 8.47}, {'connected_gene': 'CYP2D8P', 'score': 6.0}, {'connected_gene': 'ENSG00000184068', 'score': 0.44}, {'connected_gene': 'SREBF2', 'score': 0.39}, {'connected_gene': 'MIR33A', 'score': 0.22}]
chr22	GH22I041912	41912412	41913480	0.64	[{'connected_gene': 'CYP2D6', 'score': 19.31}, {'connected_gene': 'TNFRSF13C', 'score': 6.2}, {'connected_gene': 'SHISA8', 'score': 0.77}, {'connected_gene': 'GC22P041968', 'score': 0.44}]