PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000467509	[[58881055, 58881157], [58971731, 58971881], [58992932, 58993007], [58996272, 58996334]]	None
ENST00000421528	[[58933598, 58934671], [58939497, 58939640], [58971731, 58971881], [58992932, 58993007], [58996272, 58996401], [58999624, 58999732], [58999829, 59000003], [59002184, 59002413], [59004466, 59004490]]	[[58939544, 58939640], [58971731, 58971881], [58992932, 58993007], [58996272, 58996401], [58999624, 58999732], [58999829, 59000003], [59002184, 59002413], [59004466, 59004490]]
ENST00000358603	[[58939544, 58939640], [58971731, 58971881], [58992932, 58993007], [58996272, 58996401], [58999624, 58999732], [58999829, 59000003], [59002184, 59002413], [59004466, 59004982], [59012374, 59012452]]	[[58939544, 58939640], [58971731, 58971881], [58992932, 58993007], [58996272, 58996401], [58999624, 58999732], [58999829, 59000003], [59002184, 59002413], [59004466, 59004966]]
ENST00000371226	[[58946390, 58946846], [58971731, 58971881], [58992932, 58993007], [58996272, 58996401], [58999624, 58999732], [58999829, 59000003], [59002184, 59002413], [59004466, 59004982], [59012374, 59012472]]	[[58946636, 58946846], [58971731, 58971881], [58992932, 58993007], [58996272, 58996401], [58999624, 58999732], [58999829, 59000003], [59002184, 59002413], [59004466, 59004966]]
ENST00000476933	[[58946549, 58946846], [58992932, 58993007], [58996272, 58996309]]	None
ENST00000460671	[[58928223, 58928466], [58971731, 58971871]]	None
ENST00000456980	[[58999658, 58999732], [58999829, 59000003], [59002184, 59002413], [59004466, 59004982], [59012335, 59012378]]	[[58999658, 58999732], [58999829, 59000003], [59002184, 59002413], [59004466, 59004966]]
ENST00000467063	[[58999718, 58999732], [58999829, 59000003], [59002184, 59002413], [59012361, 59012402]]	None
ENST00000419242	[[58999965, 59000003], [59002184, 59002413], [59004466, 59004982], [59012361, 59012430]]	[[58999965, 59000003], [59002184, 59002413], [59004466, 59004966]]
ENST00000426139	[[58999974, 59000003], [59002184, 59002413], [59004466, 59004982], [59012412, 59012474]]	[[58999974, 59000003], [59002184, 59002413], [59004466, 59004966]]
ENST00000453710	[[59002362, 59002413], [59004466, 59004982], [59007162, 59007281], [59008154, 59008187], [59012361, 59012386]]	[[59002362, 59002413], [59004466, 59004966]]
ENST00000482274	[[59004704, 59004982], [59012306, 59012380]]	[[59004704, 59004966]]
NM_145243	[[58946390, 58946846], [58971731, 58971881], [58992932, 58993007], [58996272, 58996401], [58999624, 58999732], [58999829, 59000003], [59002184, 59002413], [59004466, 59004982], [59012374, 59012471]]	[[58946636, 58946846], [58971731, 58971881], [58992932, 58993007], [58996272, 58996401], [58999624, 58999732], [58999829, 59000003], [59002184, 59002413], [59004466, 59004966]]

Promoter

Chrom	Start	End	Description
chr1	59012334	59012342	CAGE_peak_3_at_OMA1_5end
chr1	59012365	59012437	CAGE_peak_1_at_DAB1_5end,CAGE_peak_1_at_OMA1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I058652	58652600	58652878	0.87	[{'connected_gene': 'TACSTD2', 'score': 11.53}, {'connected_gene': 'DAB1', 'score': 11.5}, {'connected_gene': 'OMA1', 'score': 11.5}, {'connected_gene': 'MYSM1', 'score': 5.68}, {'connected_gene': 'GC01M058655', 'score': 0.44}, {'connected_gene': 'GC01P058635', 'score': 0.37}]
chr1	GH01I058653	58652129	58652278	0.46	[{'connected_gene': 'TACSTD2', 'score': 11.53}, {'connected_gene': 'DAB1', 'score': 11.5}, {'connected_gene': 'OMA1', 'score': 11.5}, {'connected_gene': 'GC01M058655', 'score': 0.44}, {'connected_gene': 'GC01P058635', 'score': 0.37}]
chr1	GH01I058497	58497601	58498000	0.2	[{'connected_gene': 'TACSTD2', 'score': 26.54}, {'connected_gene': 'DAB1', 'score': 10.37}, {'connected_gene': 'OMA1', 'score': 10.37}, {'connected_gene': 'GC01P058492', 'score': 0.44}, {'connected_gene': 'GC01M058497', 'score': 0.39}]
chr1	GH01I058528	58528600	58528801	0.38	[{'connected_gene': 'TACSTD2', 'score': 10.45}, {'connected_gene': 'DAB1', 'score': 0.37}, {'connected_gene': 'GC01M058497', 'score': 0.37}, {'connected_gene': 'OMA1', 'score': 0.37}]
chr1	GH01I058617	58617520	58621475	1.14	[{'connected_gene': 'TACSTD2', 'score': 19.7}, {'connected_gene': 'OMA1', 'score': 17.6}, {'connected_gene': 'DAB1', 'score': 10.73}, {'connected_gene': 'AK2P1', 'score': 0.39}, {'connected_gene': 'GC01M058620', 'score': 0.39}, {'connected_gene': 'GC01M058574', 'score': 0.29}]
chr1	GH01I058572	58572300	58578798	2.32	[{'connected_gene': 'TACSTD2', 'score': 594.94}, {'connected_gene': 'OMA1', 'score': 20.02}, {'connected_gene': 'DAB1', 'score': 11.63}, {'connected_gene': 'RN7SL713P', 'score': 0.44}, {'connected_gene': 'GC01M058574', 'score': 0.39}]
chr1	GH01I058583	58583327	58587099	1.5	[{'connected_gene': 'TACSTD2', 'score': 44.72}, {'connected_gene': 'OMA1', 'score': 21.25}, {'connected_gene': 'DAB1', 'score': 11.13}, {'connected_gene': 'GC01M058574', 'score': 0.77}]
chr1	GH01I058578	58578988	58580035	0.49	[{'connected_gene': 'TACSTD2', 'score': 595.1}, {'connected_gene': 'OMA1', 'score': 16.16}, {'connected_gene': 'DAB1', 'score': 11.14}, {'connected_gene': 'GC01M058574', 'score': 0.44}]
chr1	GH01I058539	58539044	58540226	0.49	[{'connected_gene': 'TACSTD2', 'score': 38.76}, {'connected_gene': 'OMA1', 'score': 11.57}, {'connected_gene': 'MYSM1', 'score': 9.54}, {'connected_gene': 'DAB1', 'score': 0.44}, {'connected_gene': 'GC01M058497', 'score': 0.31}]
chr1	GH01I058596	58596396	58597427	0.6	[{'connected_gene': 'TACSTD2', 'score': 8.03}, {'connected_gene': 'OMA1', 'score': 5.83}, {'connected_gene': 'MYSM1', 'score': 4.63}, {'connected_gene': 'GC01M058574', 'score': 0.44}, {'connected_gene': 'AK2P1', 'score': 0.29}]
chr1	GH01I058503	58503892	58503903	0.24	[{'connected_gene': 'DAB1', 'score': 11.29}, {'connected_gene': 'OMA1', 'score': 11.29}, {'connected_gene': 'TACSTD2', 'score': 10.64}, {'connected_gene': 'GC01M058497', 'score': 0.44}, {'connected_gene': 'GC01P058492', 'score': 0.39}]
chr1	GH01I058515	58515909	58516098	0.67	[{'connected_gene': 'DAB1', 'score': 12.25}, {'connected_gene': 'OMA1', 'score': 12.25}, {'connected_gene': 'TACSTD2', 'score': 10.88}, {'connected_gene': 'GC01M058497', 'score': 0.44}]
chr1	GH01I058544	58544925	58547400	2.04	[{'connected_gene': 'OMA1', 'score': 557.92}, {'connected_gene': 'DAB1', 'score': 550.77}, {'connected_gene': 'TACSTD2', 'score': 30.66}, {'connected_gene': 'GC01M058497', 'score': 0.28}]
chr1	GH01I058698	58698726	58700783	2	[{'connected_gene': 'MYSM1', 'score': 558.1}, {'connected_gene': 'ENSG00000272226', 'score': 9.91}, {'connected_gene': 'DAB1', 'score': 9.71}, {'connected_gene': 'OMA1', 'score': 9.71}, {'connected_gene': 'GC01M058655', 'score': 0.26}]
chr1	GH01I058717	58717583	58719266	0.63	[{'connected_gene': 'LINC01135', 'score': 9.78}, {'connected_gene': 'JUN', 'score': 9.78}, {'connected_gene': 'DAB1', 'score': 9.66}, {'connected_gene': 'OMA1', 'score': 9.66}, {'connected_gene': 'TACSTD2', 'score': 9.29}, {'connected_gene': 'LOC105378751', 'score': 0.77}]
chr1	GH01I058432	58432409	58433653	1.05	[{'connected_gene': 'GC01P058454', 'score': 0.34}, {'connected_gene': 'DAB1', 'score': 0.14}, {'connected_gene': 'OMA1', 'score': 0.14}, {'connected_gene': 'GC01P058304', 'score': 0.13}]
chr1	GH01I058448	58448009	58448158	0.31	[{'connected_gene': 'GC01P058454', 'score': 0.44}, {'connected_gene': 'DAB1', 'score': 0.15}, {'connected_gene': 'OMA1', 'score': 0.15}, {'connected_gene': 'GC01P058304', 'score': 0.11}]